Wall clock time and date at job start Sat Apr 11 2020 06:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46498 * 120.00401 * 2 1 4 4 C 1.50706 * 109.47086 * 90.00091 * 3 2 1 5 5 H 1.08002 * 119.99643 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00222 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99780 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00167 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47133 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.46795 * 299.99745 * 8 6 4 11 11 H 1.48496 * 109.47153 * 59.99760 * 8 6 4 12 12 C 1.34781 * 120.00037 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00084 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99777 * 359.97438 * 12 2 1 15 15 H 1.08993 * 110.64119 * 20.84601 * 14 12 2 16 16 C 1.54330 * 110.71653 * 143.98354 * 14 12 2 17 17 N 1.47010 * 107.27321 * 96.17035 * 16 14 12 18 18 C 1.34785 * 125.65025 * 178.97318 * 17 16 14 19 19 O 1.21508 * 119.99919 * 179.97438 * 18 17 16 20 20 O 1.34635 * 119.99276 * 359.97438 * 18 17 16 21 21 C 1.45211 * 116.99404 * 179.97438 * 20 18 17 22 22 C 1.52996 * 109.46917 * 60.00013 * 21 20 18 23 23 C 1.52997 * 109.46690 * 179.97438 * 21 20 18 24 24 C 1.52996 * 109.46829 * 300.00027 * 21 20 18 25 25 C 1.47420 * 108.70675 * 358.93857 * 17 16 14 26 26 C 1.55150 * 110.72104 * 257.69680 * 14 12 2 27 27 C 1.52998 * 111.00650 * 35.21246 * 26 14 12 28 28 C 1.52996 * 111.00494 * 159.06798 * 26 14 12 29 29 H 1.08995 * 109.47529 * 89.99668 * 1 2 3 30 30 H 1.09004 * 109.47334 * 209.99722 * 1 2 3 31 31 H 1.08999 * 109.46941 * 329.99436 * 1 2 3 32 32 H 1.09000 * 109.47090 * 330.00419 * 3 2 1 33 33 H 1.08999 * 109.47835 * 210.00499 * 3 2 1 34 34 H 0.97004 * 119.99955 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.87827 * 215.59029 * 16 14 12 36 36 H 1.09001 * 109.88255 * 336.74507 * 16 14 12 37 37 H 1.09002 * 109.47111 * 59.99996 * 22 21 20 38 38 H 1.09004 * 109.46585 * 180.02562 * 22 21 20 39 39 H 1.09001 * 109.47051 * 299.99682 * 22 21 20 40 40 H 1.08995 * 109.47256 * 60.00217 * 23 21 20 41 41 H 1.09004 * 109.46718 * 179.97438 * 23 21 20 42 42 H 1.08994 * 109.47592 * 299.99426 * 23 21 20 43 43 H 1.09001 * 109.47575 * 60.00050 * 24 21 20 44 44 H 1.09004 * 109.47133 * 180.02562 * 24 21 20 45 45 H 1.09000 * 109.47113 * 299.99509 * 24 21 20 46 46 H 1.09000 * 110.37097 * 142.96216 * 25 17 16 47 47 H 1.09001 * 110.36835 * 265.18096 * 25 17 16 48 48 H 1.09003 * 109.46749 * 54.52073 * 27 26 14 49 49 H 1.08996 * 109.47395 * 174.52156 * 27 26 14 50 50 H 1.09000 * 109.47469 * 294.52151 * 27 26 14 51 51 H 1.09000 * 109.47544 * 60.00081 * 28 26 14 52 52 H 1.09005 * 109.47343 * 180.02562 * 28 26 14 53 53 H 1.08996 * 109.47043 * 299.99634 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0981 1.0956 2.2417 6 6 3.1261 2.8778 1.6729 7 7 3.5535 3.6179 0.6732 8 14 3.4381 3.4166 3.4340 9 1 4.1806 4.7027 3.4341 10 1 2.1408 3.5934 4.1347 11 1 4.2414 2.3818 4.1333 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.3675 -2.3284 -0.3631 16 6 2.1231 -3.5287 -0.8499 17 7 2.9350 -4.3388 0.0698 18 6 3.7140 -5.3814 -0.2805 19 8 4.3445 -5.9808 0.5678 20 8 3.7935 -5.7586 -1.5705 21 6 4.6522 -6.8894 -1.8748 22 6 4.1596 -8.1228 -1.1154 23 6 4.6143 -7.1682 -3.3787 24 6 6.0869 -6.5687 -1.4510 25 6 2.7567 -3.8214 1.4387 26 6 1.3791 -3.1027 1.4171 27 6 1.3023 -2.0220 2.4975 28 6 0.2340 -4.1064 1.5661 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6084 2.0284 -0.5138 33 1 3.1499 1.1384 -0.5139 34 1 4.0304 4.4438 0.8505 35 1 1.4000 -4.1629 -1.3627 36 1 2.7678 -3.0353 -1.5771 37 1 3.1375 -8.3512 -1.4173 38 1 4.8046 -8.9714 -1.3435 39 1 4.1863 -7.9244 -0.0439 40 1 4.9649 -6.2896 -3.9201 41 1 5.2593 -8.0167 -3.6072 42 1 3.5922 -7.3968 -3.6802 43 1 6.1136 -6.3703 -0.3796 44 1 6.7317 -7.4173 -1.6799 45 1 6.4378 -5.6900 -1.9922 46 1 2.7447 -4.6421 2.1559 47 1 3.5505 -3.1158 1.6840 48 1 0.4393 -1.3827 2.3111 49 1 1.2014 -2.4925 3.4755 50 1 2.2113 -1.4209 2.4755 51 1 0.3503 -4.9022 0.8304 52 1 0.2528 -4.5328 2.5691 53 1 -0.7171 -3.5989 1.4052 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877981712.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:51 Heat of formation + Delta-G solvation = -136.386565 kcal Electronic energy + Delta-G solvation = -32314.784578 eV Core-core repulsion = 28185.908154 eV Total energy + Delta-G solvation = -4128.876424 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.21494 -41.29805 -39.20879 -37.69484 -36.56122 -35.41970 -34.72623 -34.26263 -31.52981 -29.66549 -28.37685 -28.31149 -28.28041 -27.80926 -27.26627 -25.75814 -24.06404 -22.70820 -20.96846 -20.52253 -19.50080 -18.79405 -18.64777 -18.21012 -17.62308 -17.38421 -17.04828 -16.41491 -16.29204 -15.90283 -15.66052 -15.29534 -15.06371 -14.74448 -14.67987 -14.31614 -14.16425 -13.85816 -13.77340 -13.50534 -13.41227 -13.35293 -13.33334 -13.09447 -13.05789 -12.99928 -12.90952 -12.86134 -12.82987 -12.71421 -12.52160 -12.45416 -12.26214 -12.20180 -12.06541 -11.86378 -11.67321 -11.55295 -11.40217 -11.13548 -10.62627 -10.44928 -9.81479 -9.36561 -8.20607 -6.34308 1.03609 1.35921 1.40315 1.46773 1.71078 1.78415 2.30633 2.45459 2.83478 3.09453 3.28162 3.41300 3.60232 3.75224 3.79801 3.90718 3.94609 4.09222 4.20916 4.29169 4.39096 4.45552 4.54060 4.59076 4.61086 4.66615 4.73711 4.75657 4.75790 4.77920 4.81401 4.83936 4.87482 4.95196 4.98028 5.04818 5.06637 5.07661 5.13072 5.17202 5.26204 5.27373 5.34029 5.35202 5.44140 5.45505 5.60474 5.87186 6.08829 6.37988 6.73439 6.83196 7.21354 7.31348 7.53052 8.86216 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.003022 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.660894 B = 9263.941432 C = 9668.071830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.604 5.604 3 C 0.261 3.739 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.962 3.038 9 H -0.282 1.282 10 H -0.256 1.256 11 H -0.280 1.280 12 C 0.510 3.490 13 O -0.594 6.594 14 C -0.110 4.110 15 H 0.151 0.849 16 C 0.129 3.871 17 N -0.596 5.596 18 C 0.664 3.336 19 O -0.594 6.594 20 O -0.366 6.366 21 C 0.121 3.879 22 C -0.175 4.175 23 C -0.134 4.134 24 C -0.182 4.182 25 C 0.135 3.865 26 C -0.046 4.046 27 C -0.140 4.140 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.023 0.977 33 H -0.008 1.008 34 H 0.265 0.735 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.088 0.912 47 H 0.038 0.962 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.022 0.978 51 H 0.061 0.939 52 H 0.073 0.927 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -22.502 -4.580 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.335 5.335 3 C 0.140 3.860 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.192 4.192 7 N -0.571 5.571 8 Si 0.786 3.214 9 H -0.208 1.208 10 H -0.181 1.181 11 H -0.206 1.206 12 C 0.299 3.701 13 O -0.475 6.475 14 C -0.131 4.131 15 H 0.169 0.831 16 C 0.006 3.994 17 N -0.335 5.335 18 C 0.420 3.580 19 O -0.486 6.486 20 O -0.281 6.281 21 C 0.085 3.915 22 C -0.232 4.232 23 C -0.191 4.191 24 C -0.239 4.239 25 C 0.013 3.987 26 C -0.048 4.048 27 C -0.198 4.198 28 C -0.182 4.182 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.010 0.990 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.056 0.944 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.042 0.958 51 H 0.080 0.920 52 H 0.092 0.908 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.133 -22.608 -4.475 24.790 hybrid contribution 1.216 1.217 0.786 1.892 sum -7.917 -21.391 -3.689 23.106 Atomic orbital electron populations 1.22051 0.77909 1.04202 1.02832 1.48107 1.08307 1.06025 1.71037 1.18705 0.90886 0.80480 0.95948 1.21685 1.36299 1.06138 0.93118 0.92309 1.25828 0.95176 0.96676 1.01555 1.70051 1.39207 1.14868 1.33006 0.85556 0.78939 0.77198 0.79681 1.20752 1.18077 1.20608 1.20826 0.87520 0.86037 0.75755 1.90673 1.16720 1.87914 1.52149 1.22663 1.01778 0.90417 0.98278 0.83106 1.21931 0.94004 0.91869 0.91612 1.47047 1.46427 1.29784 1.10283 1.17590 0.78678 0.79923 0.81820 1.90863 1.48562 1.57321 1.51831 1.86328 1.65721 1.50892 1.25128 1.22487 0.88311 0.82833 0.97867 1.22437 1.02445 0.96847 1.01459 1.21874 1.04351 1.03312 0.89514 1.22491 0.95787 1.03014 1.02629 1.22411 0.97160 0.97369 0.81712 1.21761 0.94814 0.95853 0.92347 1.21831 1.01926 0.97339 0.98657 1.21746 0.96062 0.97242 1.03125 0.90920 0.88351 0.91394 0.95908 0.98996 0.92599 0.86840 0.93200 0.91342 0.88852 0.92171 0.91955 0.87608 0.90600 0.92463 0.88500 0.93017 0.89399 0.94353 0.90204 0.89918 0.95834 0.91984 0.90826 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.89 9.60 127.77 1.23 3.12 16 2 N -0.60 -24.07 2.86 -851.15 -2.43 -26.50 16 3 C 0.26 13.83 5.16 85.64 0.44 14.27 16 4 C -0.53 -30.10 9.39 25.60 0.24 -29.86 16 5 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 6 C 0.01 0.36 5.46 84.65 0.46 0.82 16 7 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 8 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 9 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 10 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.51 20.11 4.75 87.66 0.42 20.53 16 13 O -0.59 -30.62 15.14 -3.02 -0.05 -30.67 16 14 C -0.11 -2.85 1.98 -10.35 -0.02 -2.87 16 15 H 0.15 2.58 6.13 -2.39 -0.01 2.56 16 16 C 0.13 3.44 5.84 86.73 0.51 3.95 16 17 N -0.60 -18.42 3.32 -941.13 -3.12 -21.54 16 18 C 0.66 21.76 7.93 129.79 1.03 22.79 16 19 O -0.59 -21.63 12.14 19.82 0.24 -21.39 16 20 O -0.37 -10.43 9.49 -55.44 -0.53 -10.96 16 21 C 0.12 2.68 1.13 -10.80 -0.01 2.67 16 22 C -0.17 -3.42 8.37 71.98 0.60 -2.81 16 23 C -0.13 -1.98 8.85 71.98 0.64 -1.34 16 24 C -0.18 -4.33 8.37 71.98 0.60 -3.73 16 25 C 0.13 4.14 5.44 87.03 0.47 4.61 16 26 C -0.05 -1.09 0.83 -50.62 -0.04 -1.14 16 27 C -0.14 -3.72 7.93 71.98 0.57 -3.15 16 28 C -0.12 -1.82 8.58 71.98 0.62 -1.21 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 1.80 5.08 -2.38 -0.01 1.79 16 31 H 0.07 1.91 8.07 -2.39 -0.02 1.90 16 32 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 33 H -0.01 -0.51 7.42 -2.39 -0.02 -0.52 16 34 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 35 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 1.62 7.61 -2.39 -0.02 1.61 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.55 5.88 -2.39 -0.01 1.53 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.74 5.88 -2.39 -0.01 1.73 16 44 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 2.48 7.95 -2.39 -0.02 2.46 16 47 H 0.04 1.50 7.45 -2.39 -0.02 1.49 16 48 H 0.08 1.91 6.55 -2.39 -0.02 1.89 16 49 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.02 0.86 7.14 -2.39 -0.02 0.84 16 51 H 0.06 0.91 7.91 -2.39 -0.02 0.89 16 52 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 53 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -81.28 411.66 5.06 -76.22 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.88 Total: 17.64 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 7.75 Total: 26.63 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -5.27 Total: -104.40 kcal Atomic # 8 Polarization: -62.68 SS G_CDS: -0.33 Total: -63.01 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -81.28 5.06 -76.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877981712.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.166 kcal (2) G-P(sol) polarization free energy of solvation -81.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds