Wall clock time and date at job start Sat Apr 11 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.52997 * 109.47466 * 314.30163 * 15 14 13 17 17 H 1.09006 * 109.47068 * 59.99336 * 16 15 14 18 18 O 1.42901 * 109.47149 * 300.00077 * 16 15 14 19 19 C 1.52998 * 109.47491 * 179.97438 * 16 15 14 20 20 C 1.52999 * 109.47042 * 184.99981 * 19 16 15 21 21 C 1.53001 * 110.01883 * 58.61050 * 20 19 16 22 22 O 1.42902 * 109.47255 * 179.97438 * 21 20 19 23 23 C 1.54269 * 110.03283 * 297.16641 * 20 19 16 24 24 C 1.54888 * 104.19457 * 217.10194 * 23 20 19 25 25 C 1.54895 * 102.74706 * 37.94998 * 24 23 20 26 26 C 1.53877 * 110.03286 * 180.02562 * 20 19 16 27 27 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 28 28 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 29 29 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 31 31 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 32 32 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 33 33 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 34 34 H 1.09008 * 109.47010 * 74.30063 * 15 14 13 35 35 H 1.09000 * 109.47622 * 194.30162 * 15 14 13 36 36 H 0.96704 * 113.99926 * 299.99861 * 18 16 15 37 37 H 1.09000 * 109.47245 * 304.99703 * 19 16 15 38 38 H 1.09000 * 109.46838 * 65.00219 * 19 16 15 39 39 H 1.09003 * 109.47094 * 299.99945 * 21 20 19 40 40 H 1.09000 * 109.47024 * 59.99638 * 21 20 19 41 41 H 0.96699 * 113.99556 * 179.97438 * 22 21 20 42 42 H 1.08992 * 110.48586 * 335.78653 * 23 20 19 43 43 H 1.09004 * 110.47930 * 98.43042 * 23 20 19 44 44 H 1.09001 * 110.76087 * 279.63080 * 24 23 20 45 45 H 1.09008 * 110.75166 * 156.25535 * 24 23 20 46 46 H 1.09003 * 110.48201 * 203.37495 * 25 24 23 47 47 H 1.08997 * 110.49194 * 80.73214 * 25 24 23 48 48 H 1.08999 * 110.03126 * 238.57105 * 26 20 19 49 49 H 1.09000 * 110.02681 * 0.02562 * 26 20 19 50 50 H 1.08994 * 109.49159 * 303.15220 * 27 14 13 51 51 H 1.08999 * 109.51460 * 183.07675 * 27 14 13 52 52 H 1.08999 * 109.63197 * 350.89564 * 28 11 9 53 53 H 1.09002 * 109.62700 * 111.28074 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.3117 -6.9343 1.5758 17 1 5.6109 -5.9548 1.9489 18 8 5.8118 -7.1115 0.2489 19 6 5.8832 -8.0228 2.4864 20 6 7.3993 -7.8498 2.5986 21 6 7.7283 -6.4636 3.1565 22 8 9.1460 -6.3147 3.2569 23 6 8.0560 -8.0332 1.2148 24 6 9.3843 -8.7693 1.5194 25 6 8.9818 -9.7462 2.6520 26 6 7.9880 -8.9393 3.5119 27 6 1.7771 -5.8907 0.8322 28 6 1.2249 -4.9226 -0.2195 29 1 -0.4850 0.8400 0.0004 30 1 3.7736 -3.9711 -1.0920 31 1 3.8007 -2.6840 0.1423 32 1 3.6077 -4.3397 1.9417 33 1 4.9637 -4.8055 0.8864 34 1 3.4033 -6.8950 2.5745 35 1 3.4857 -8.0097 1.1892 36 1 5.5829 -7.9635 -0.1471 37 1 5.4340 -7.9414 3.4762 38 1 5.6596 -9.0031 2.0653 39 1 7.3287 -5.6994 2.4897 40 1 7.2808 -6.3539 4.1443 41 1 9.4277 -5.4572 3.6039 42 1 7.4222 -8.6412 0.5694 43 1 8.2533 -7.0649 0.7549 44 1 10.1439 -8.0684 1.8657 45 1 9.7325 -9.3163 0.6432 46 1 9.8547 -10.0281 3.2408 47 1 8.4975 -10.6309 2.2387 48 1 8.5088 -8.4806 4.3525 49 1 7.1937 -9.5916 3.8748 50 1 1.5327 -5.5231 1.8288 51 1 1.3329 -6.8757 0.6888 52 1 0.1612 -4.7606 -0.0453 53 1 1.3736 -5.3370 -1.2167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878671396.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:01 Heat of formation + Delta-G solvation = -162.150968 kcal Electronic energy + Delta-G solvation = -31499.905851 eV Core-core repulsion = 27369.912199 eV Total energy + Delta-G solvation = -4129.993652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.00575 -40.25817 -38.74017 -37.34737 -36.57544 -34.96942 -34.57708 -33.10059 -32.15178 -30.26162 -29.47189 -28.73957 -27.44009 -26.04171 -24.67321 -24.62003 -22.80962 -21.86074 -21.34145 -20.54922 -19.64262 -18.54242 -18.34917 -17.81791 -17.14223 -16.83835 -16.60338 -16.26094 -15.96026 -15.83061 -15.77264 -15.70717 -15.49251 -15.28636 -15.15465 -14.48827 -14.41622 -14.04369 -13.65156 -13.53301 -13.41835 -13.23210 -13.05168 -12.82216 -12.73207 -12.70286 -12.58880 -12.26935 -12.23767 -12.13178 -12.01409 -11.89966 -11.86760 -11.65833 -11.55840 -11.37719 -11.26198 -11.05783 -10.92893 -10.64714 -10.40818 -9.81009 -9.41197 -8.99489 -8.30217 -6.85423 1.38791 1.42393 1.53911 2.22833 2.44388 2.69968 2.96966 3.35538 3.53960 3.58354 3.72945 3.76047 3.97244 4.02122 4.04156 4.09915 4.16692 4.31833 4.36224 4.36947 4.43068 4.45786 4.48229 4.56435 4.63150 4.67653 4.72744 4.76399 4.80560 4.82067 4.90212 4.92761 4.95691 4.99289 5.08013 5.10519 5.17754 5.19622 5.22045 5.33637 5.36534 5.38859 5.52589 5.60959 5.67200 5.72873 6.02677 6.10791 6.13581 6.41255 6.86357 6.94774 7.04629 7.41236 8.44987 8.65922 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016880 B = 0.002509 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.396421 B =11156.211591 C =12257.325429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.275 1.275 5 H -0.253 1.253 6 H -0.253 1.253 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.540 3.460 10 O -0.634 6.634 11 N -0.648 5.648 12 C 0.126 3.874 13 C 0.051 3.949 14 N -0.525 5.525 15 C 0.023 3.977 16 C 0.111 3.889 17 H 0.089 0.911 18 O -0.553 6.553 19 C -0.129 4.129 20 C -0.054 4.054 21 C 0.083 3.917 22 O -0.580 6.580 23 C -0.086 4.086 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.109 4.109 27 C 0.058 3.942 28 C 0.122 3.878 29 H 0.274 0.726 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.016 0.984 33 H 0.106 0.894 34 H 0.038 0.962 35 H 0.096 0.904 36 H 0.382 0.618 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.389 0.611 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.014 0.986 51 H 0.104 0.896 52 H 0.054 0.946 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.423 -18.895 6.838 27.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.177 1.177 6 H -0.177 1.177 7 C -0.606 4.606 8 H 0.110 0.890 9 C 0.346 3.654 10 O -0.522 6.522 11 N -0.385 5.385 12 C 0.003 3.997 13 C -0.078 4.078 14 N -0.250 5.250 15 C -0.105 4.105 16 C 0.052 3.948 17 H 0.107 0.893 18 O -0.360 6.360 19 C -0.168 4.168 20 C -0.055 4.055 21 C 0.005 3.995 22 O -0.387 6.387 23 C -0.123 4.123 24 C -0.164 4.164 25 C -0.156 4.156 26 C -0.147 4.147 27 C -0.071 4.071 28 C -0.002 4.002 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.034 0.966 33 H 0.124 0.876 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.231 0.769 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.238 0.762 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.033 0.967 51 H 0.122 0.878 52 H 0.072 0.928 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.910 -18.964 6.274 27.507 hybrid contribution -0.684 1.212 1.034 1.734 sum 18.226 -17.752 7.308 26.472 Atomic orbital electron populations 1.70188 1.09583 1.28978 1.36533 1.27012 0.95515 1.04984 0.91172 0.85101 0.78267 0.74732 0.80414 1.19960 1.17669 1.17686 1.21465 0.94750 0.89808 1.54566 0.88954 1.18675 0.86557 0.84206 0.75915 1.90528 1.16622 1.87428 1.57615 1.48141 1.06662 1.05531 1.78189 1.21717 0.79915 0.99406 0.98665 1.22582 1.00216 0.89040 0.95937 1.61944 1.03177 1.05811 1.54064 1.22986 0.96364 0.96093 0.95035 1.21961 0.89953 0.99130 0.83775 0.89342 1.86643 1.77902 1.42751 1.28691 1.22292 0.93800 0.99904 1.00767 1.21128 0.94482 0.93688 0.96153 1.22332 0.81576 0.96842 0.98759 1.86451 1.22148 1.41420 1.88666 1.22230 0.95251 0.99851 0.95008 1.22519 0.98101 0.97884 0.97871 1.22277 0.98568 0.97914 0.96880 1.22147 0.98383 0.96393 0.97736 1.22347 0.88813 0.99739 0.96175 1.21305 0.96187 0.84160 0.98519 0.91606 0.92296 0.89967 0.96561 0.87572 0.94399 0.88580 0.76854 0.90442 0.89230 0.94002 0.93644 0.76219 0.90854 0.93193 0.92419 0.92135 0.92345 0.91285 0.92484 0.91224 0.96722 0.87778 0.92797 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.17 11.84 21.83 0.26 -50.91 16 2 C 0.03 1.59 5.50 85.30 0.47 2.05 16 3 Si 1.00 41.15 29.56 68.60 2.03 43.18 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.57 -32.71 8.86 24.83 0.22 -32.49 16 8 H 0.09 4.73 5.74 -2.91 -0.02 4.71 16 9 C 0.54 32.38 7.63 86.36 0.66 33.03 16 10 O -0.63 -43.72 14.49 -4.31 -0.06 -43.78 16 11 N -0.65 -30.92 3.00 -822.13 -2.47 -33.39 16 12 C 0.13 4.84 6.50 86.50 0.56 5.40 16 13 C 0.05 1.54 5.06 86.54 0.44 1.98 16 14 N -0.53 -14.13 4.64 -894.31 -4.15 -18.28 16 15 C 0.02 0.42 4.93 86.30 0.43 0.85 16 16 C 0.11 1.76 2.00 30.59 0.06 1.82 16 17 H 0.09 1.66 4.22 -2.38 -0.01 1.65 16 18 O -0.55 -9.49 10.28 -148.98 -1.53 -11.02 16 19 C -0.13 -1.54 3.74 30.59 0.11 -1.42 16 20 C -0.05 -0.77 0.58 -51.46 -0.03 -0.80 16 21 C 0.08 1.28 5.28 71.98 0.38 1.66 16 22 O -0.58 -9.33 11.42 -148.98 -1.70 -11.03 16 23 C -0.09 -1.37 4.00 31.67 0.13 -1.24 16 24 C -0.13 -2.03 6.56 31.89 0.21 -1.83 16 25 C -0.12 -1.65 6.83 31.65 0.22 -1.44 16 26 C -0.11 -1.52 5.86 31.30 0.18 -1.33 16 27 C 0.06 1.82 5.58 86.38 0.48 2.30 16 28 C 0.12 5.01 6.61 86.35 0.57 5.58 16 29 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 30 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.08 3.27 5.46 -2.39 -0.01 3.25 16 32 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 2.76 5.58 -2.39 -0.01 2.75 16 34 H 0.04 0.73 8.08 -2.38 -0.02 0.71 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.38 4.40 8.50 -74.05 -0.63 3.77 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 39 H 0.04 0.72 6.35 -2.39 -0.02 0.70 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.39 3.45 9.12 -74.06 -0.68 2.78 16 42 H 0.07 1.02 6.49 -2.39 -0.02 1.01 16 43 H 0.05 1.01 7.63 -2.39 -0.02 1.00 16 44 H 0.06 1.11 7.22 -2.39 -0.02 1.09 16 45 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.91 7.37 -2.39 -0.02 0.89 16 49 H 0.07 0.81 7.67 -2.39 -0.02 0.79 16 50 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.10 2.58 8.11 -2.39 -0.02 2.56 16 52 H 0.05 2.53 7.04 -2.39 -0.02 2.51 16 53 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -80.19 394.45 -2.92 -83.11 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.38 Total: 28.01 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 5.09 Total: 14.13 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -6.36 Total: -102.59 kcal Atomic # 8 Polarization: -62.55 SS G_CDS: -3.29 Total: -65.84 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -80.19 -2.92 -83.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878671396.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.045 kcal (2) G-P(sol) polarization free energy of solvation -80.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds