Wall clock time and date at job start Sat Apr 11 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86800 * 119.99681 * 2 1 4 4 H 1.48504 * 109.46842 * 90.00705 * 3 2 1 5 5 H 1.48509 * 109.47000 * 210.00163 * 3 2 1 6 6 H 1.48499 * 109.47396 * 330.00163 * 3 2 1 7 7 C 1.40051 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99789 * 359.97438 * 7 2 1 10 10 O 1.21680 * 120.00481 * 354.99514 * 9 7 2 11 11 N 1.34777 * 119.99627 * 174.98916 * 9 7 2 12 12 C 1.47083 * 120.88033 * 4.96291 * 11 9 7 13 13 C 1.53696 * 108.27709 * 128.75356 * 12 11 9 14 14 N 1.46903 * 109.25262 * 54.08266 * 13 12 11 15 15 C 1.46902 * 110.99835 * 172.60840 * 14 13 12 16 16 C 1.53006 * 109.47033 * 55.15175 * 15 14 13 17 17 H 1.08998 * 109.47274 * 307.03195 * 16 15 14 18 18 O 1.42902 * 109.46811 * 67.03404 * 16 15 14 19 19 C 1.53001 * 109.47034 * 187.03258 * 16 15 14 20 20 C 1.53006 * 109.47082 * 175.00320 * 19 16 15 21 21 O 1.42899 * 109.47097 * 64.99981 * 20 19 16 22 22 C 1.52995 * 109.46884 * 304.99910 * 20 19 16 23 23 C 1.52997 * 109.47253 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47183 * 59.99607 * 23 22 20 25 25 C 1.52995 * 109.47347 * 300.00335 * 24 23 22 26 26 C 1.52999 * 109.46898 * 184.99792 * 20 19 16 27 27 C 1.46900 * 111.26849 * 296.75161 * 14 13 12 28 28 C 1.47081 * 120.88332 * 185.24184 * 11 9 7 29 29 H 0.97002 * 119.99982 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.62540 * 248.52175 * 12 11 9 31 31 H 1.08999 * 109.63027 * 9.09858 * 12 11 9 32 32 H 1.08993 * 109.64603 * 294.08238 * 13 12 11 33 33 H 1.08997 * 109.44230 * 173.95613 * 13 12 11 34 34 H 1.09000 * 109.47319 * 175.15032 * 15 14 13 35 35 H 1.08995 * 109.47422 * 295.15612 * 15 14 13 36 36 H 0.96701 * 114.00371 * 59.99921 * 18 16 15 37 37 H 1.09006 * 109.47023 * 294.99826 * 19 16 15 38 38 H 1.08999 * 109.47397 * 54.99985 * 19 16 15 39 39 H 0.96697 * 113.99896 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.47084 * 300.00020 * 22 20 19 41 41 H 1.09002 * 109.47335 * 59.99698 * 22 20 19 42 42 H 1.09001 * 109.46984 * 299.99949 * 23 22 20 43 43 H 1.09002 * 109.47650 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.47507 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.46881 * 60.00279 * 24 23 22 46 46 H 1.08995 * 109.47374 * 300.00081 * 25 24 23 47 47 H 1.09003 * 109.47478 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47329 * 299.99656 * 26 20 19 49 49 H 1.09001 * 109.47141 * 59.99936 * 26 20 19 50 50 H 1.08994 * 109.49716 * 303.14766 * 27 14 13 51 51 H 1.09002 * 109.51558 * 183.07884 * 27 14 13 52 52 H 1.09002 * 109.62259 * 350.89553 * 28 11 9 53 53 H 1.08993 * 109.63110 * 111.27971 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0464 1.4001 5 1 3.5383 1.4403 -0.7001 6 1 1.4381 2.6527 -0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0618 -2.4826 0.0919 11 7 1.9451 -3.6454 -0.1030 12 6 3.4157 -3.6727 -0.1068 13 6 3.8816 -4.6906 0.9462 14 7 3.2363 -5.9848 0.6878 15 6 3.7850 -7.0305 1.5615 16 6 3.6584 -6.5929 3.0221 17 1 4.1043 -5.6060 3.1458 18 8 2.2774 -6.5407 3.3857 19 6 4.3845 -7.5967 3.9200 20 6 4.3651 -7.0953 5.3654 21 8 3.0182 -7.0673 5.8418 22 6 4.9563 -5.6854 5.4240 23 6 4.9375 -5.1842 6.8694 24 6 5.7694 -6.1229 7.7456 25 6 5.1782 -7.5328 7.6870 26 6 5.1967 -8.0339 6.2420 27 6 1.7773 -5.8908 0.8315 28 6 1.2252 -4.9226 -0.2201 29 1 -0.4850 0.8401 0.0004 30 1 3.7738 -3.9707 -1.0922 31 1 3.8009 -2.6839 0.1422 32 1 3.6079 -4.3400 1.9412 33 1 4.9639 -4.8054 0.8859 34 1 3.2317 -7.9574 1.4106 35 1 4.8357 -7.1911 1.3202 36 1 1.8158 -7.3861 3.3000 37 1 3.8833 -8.5632 3.8639 38 1 5.4166 -7.7028 3.5860 39 1 2.9299 -6.7582 6.7538 40 1 5.9837 -5.7069 5.0606 41 1 4.3639 -5.0167 4.7994 42 1 3.9102 -5.1628 7.2332 43 1 5.3583 -4.1795 6.9112 44 1 5.7557 -5.7661 8.7754 45 1 6.7967 -6.1443 7.3818 46 1 4.1510 -7.5115 8.0507 47 1 5.7711 -8.2017 8.3108 48 1 4.7754 -9.0384 6.2002 49 1 6.2241 -8.0554 5.8785 50 1 1.5329 -5.5234 1.8282 51 1 1.3331 -6.8758 0.6879 52 1 0.1614 -4.7606 -0.0459 53 1 1.3739 -5.3367 -1.2173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878673057.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:04 Heat of formation + Delta-G solvation = -166.462845 kcal Electronic energy + Delta-G solvation = -32024.800181 eV Core-core repulsion = 27894.619552 eV Total energy + Delta-G solvation = -4130.180629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.17395 -40.38442 -38.97122 -37.21125 -35.55436 -34.89475 -34.52929 -33.19420 -32.05287 -31.77873 -30.22017 -28.72421 -27.54024 -25.43913 -24.56746 -23.96202 -23.07802 -22.13432 -21.73813 -20.44712 -20.32395 -18.47250 -18.09252 -17.88556 -17.23349 -16.94015 -16.25462 -16.13114 -16.06669 -15.86907 -15.69389 -15.61577 -15.30685 -15.04515 -14.98624 -14.49532 -14.40932 -14.14150 -13.83558 -13.49308 -13.32909 -13.16725 -13.08281 -12.98470 -12.72502 -12.66066 -12.58482 -12.37767 -12.30206 -12.23441 -12.20613 -12.00920 -11.83638 -11.78726 -11.71911 -11.55632 -11.48611 -11.22029 -10.93799 -10.87759 -10.38106 -9.78727 -9.25254 -8.81202 -8.29111 -6.84123 1.38381 1.40663 1.55766 2.23383 2.46011 2.78826 3.09179 3.36218 3.46320 3.60863 3.68281 3.79463 3.86795 3.96918 4.06892 4.11401 4.15936 4.22910 4.28372 4.35953 4.36894 4.48553 4.51567 4.55424 4.60368 4.65142 4.68596 4.72138 4.74073 4.80623 4.86243 4.88799 4.93408 4.99668 5.05505 5.10789 5.14771 5.14832 5.19987 5.24356 5.33435 5.36263 5.37431 5.45973 5.50480 5.75327 6.07361 6.14491 6.17780 6.43944 6.87212 6.90951 6.97609 7.44540 8.47271 8.67736 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.002972 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.156920 B = 9418.737498 C =10612.664143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.244 1.244 6 H -0.273 1.273 7 C -0.569 4.569 8 H 0.094 0.906 9 C 0.540 3.460 10 O -0.635 6.635 11 N -0.647 5.647 12 C 0.124 3.876 13 C 0.050 3.950 14 N -0.529 5.529 15 C 0.025 3.975 16 C 0.073 3.927 17 H 0.083 0.917 18 O -0.559 6.559 19 C -0.130 4.130 20 C 0.140 3.860 21 O -0.560 6.560 22 C -0.146 4.146 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.139 4.139 27 C 0.053 3.947 28 C 0.120 3.880 29 H 0.273 0.727 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.374 0.626 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.371 0.629 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.045 0.955 51 H 0.092 0.908 52 H 0.047 0.953 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.774 -17.767 13.290 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.167 1.167 6 H -0.198 1.198 7 C -0.605 4.605 8 H 0.111 0.889 9 C 0.346 3.654 10 O -0.523 6.523 11 N -0.383 5.383 12 C 0.000 4.000 13 C -0.079 4.079 14 N -0.252 5.252 15 C -0.103 4.103 16 C 0.013 3.987 17 H 0.101 0.899 18 O -0.365 6.365 19 C -0.168 4.168 20 C 0.099 3.901 21 O -0.367 6.367 22 C -0.184 4.184 23 C -0.163 4.163 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.177 4.177 27 C -0.076 4.076 28 C -0.004 4.004 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.037 0.963 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.222 0.778 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.220 0.780 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.063 0.937 51 H 0.110 0.890 52 H 0.066 0.934 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.087 -17.424 12.335 27.344 hybrid contribution -0.504 0.791 1.143 1.478 sum 16.582 -16.633 13.477 27.079 Atomic orbital electron populations 1.70210 1.09663 1.28862 1.36719 1.27050 0.95524 1.05081 0.91184 0.85034 0.78958 0.74987 0.79413 1.18704 1.16742 1.19782 1.21493 0.94752 0.89754 1.54506 0.88853 1.18706 0.86574 0.84273 0.75870 1.90524 1.16760 1.87456 1.57576 1.48102 1.06689 1.05453 1.78099 1.21762 0.80000 0.99533 0.98687 1.22531 0.99768 0.89315 0.96292 1.62209 1.04054 1.06044 1.52930 1.23071 1.02409 0.94878 0.89899 1.22711 0.82648 0.99753 0.93630 0.89912 1.86698 1.22202 1.37366 1.90249 1.22263 1.02538 0.99262 0.92762 1.21110 0.82056 0.93313 0.93592 1.86640 1.26977 1.89358 1.33770 1.22244 1.01481 0.97260 0.97380 1.21549 1.00354 0.99454 0.94898 1.21549 0.99437 0.94686 0.99752 1.21544 1.01395 0.96607 0.96425 1.22169 1.00891 0.99080 0.95565 1.22458 0.88514 0.98963 0.97625 1.21346 0.96053 0.84481 0.98499 0.91667 0.91975 0.89917 0.96252 0.87478 0.89283 0.87940 0.77783 0.90321 0.87964 0.78013 0.90382 0.93572 0.92547 0.92014 0.91294 0.91391 0.92070 0.90578 0.91300 0.90223 0.93675 0.89013 0.93419 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.41 11.84 21.84 0.26 -52.15 16 2 C 0.03 1.51 5.50 85.30 0.47 1.98 16 3 Si 1.00 41.95 29.56 68.60 2.03 43.98 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.24 -9.40 7.11 99.48 0.71 -8.69 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.57 -33.36 8.86 24.83 0.22 -33.14 16 8 H 0.09 4.87 5.74 -2.91 -0.02 4.85 16 9 C 0.54 33.30 7.63 86.36 0.66 33.96 16 10 O -0.64 -45.18 14.49 -4.28 -0.06 -45.24 16 11 N -0.65 -31.91 3.00 -822.14 -2.47 -34.38 16 12 C 0.12 4.78 6.50 86.50 0.56 5.34 16 13 C 0.05 1.53 4.86 86.54 0.42 1.95 16 14 N -0.53 -14.89 4.83 -894.32 -4.32 -19.20 16 15 C 0.03 0.49 5.19 86.30 0.45 0.94 16 16 C 0.07 1.53 2.30 30.60 0.07 1.60 16 17 H 0.08 2.11 4.02 -2.39 -0.01 2.10 16 18 O -0.56 -15.09 8.76 -130.23 -1.14 -16.23 16 19 C -0.13 -1.96 4.27 30.60 0.13 -1.83 16 20 C 0.14 2.28 0.79 -10.79 -0.01 2.27 16 21 O -0.56 -11.71 11.35 -130.23 -1.48 -13.19 16 22 C -0.15 -2.63 4.46 30.59 0.14 -2.49 16 23 C -0.13 -2.01 5.67 30.59 0.17 -1.84 16 24 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 25 C -0.12 -1.34 5.67 30.58 0.17 -1.16 16 26 C -0.14 -1.67 4.94 30.58 0.15 -1.52 16 27 C 0.05 1.79 4.84 86.38 0.42 2.21 16 28 C 0.12 5.22 6.61 86.35 0.57 5.79 16 29 H 0.27 15.72 8.29 -92.71 -0.77 14.95 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.08 3.31 5.46 -2.39 -0.01 3.30 16 32 H 0.02 0.69 6.52 -2.39 -0.02 0.67 16 33 H 0.11 2.50 8.11 -2.39 -0.02 2.48 16 34 H 0.09 1.51 7.99 -2.39 -0.02 1.49 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.37 8.08 9.05 -74.06 -0.67 7.41 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.37 6.49 5.69 -74.06 -0.42 6.07 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.13 6.23 -2.39 -0.01 1.12 16 42 H 0.06 0.97 6.78 -2.39 -0.02 0.95 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 0.70 6.78 -2.39 -0.02 0.68 16 47 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.05 1.78 5.79 -2.39 -0.01 1.77 16 51 H 0.09 2.57 8.00 -2.39 -0.02 2.55 16 52 H 0.05 2.39 7.04 -2.39 -0.02 2.37 16 53 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -83.12 388.36 -2.57 -85.69 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.16 Total: 37.86 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 4.78 Total: 12.86 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -6.53 Total: -105.73 kcal Atomic # 8 Polarization: -71.97 SS G_CDS: -2.68 Total: -74.65 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -83.12 -2.57 -85.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878673057.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.775 kcal (2) G-P(sol) polarization free energy of solvation -83.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds