Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46442 * 2 1 4 4 N 1.46500 * 109.47528 * 59.99688 * 3 2 1 5 5 C 1.34773 * 120.00431 * 180.02562 * 4 3 2 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 3 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46988 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99624 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99634 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00657 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99703 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47233 * 60.00389 * 15 13 11 17 17 H 1.48496 * 109.47105 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47194 * 300.00217 * 15 13 11 19 19 C 1.52998 * 109.46574 * 119.97585 * 2 1 3 20 20 C 1.53014 * 109.46062 * 59.85519 * 19 2 1 21 21 C 1.52959 * 109.42668 * 59.80721 * 20 19 2 22 22 C 1.52963 * 109.81800 * 300.29400 * 21 20 19 23 23 C 1.52991 * 109.46581 * 240.01795 * 2 1 3 24 24 O 1.43710 * 109.40263 * 60.39422 * 21 20 19 25 25 C 1.44787 * 104.79545 * 95.49549 * 24 21 20 26 26 C 1.54922 * 101.72167 * 36.06825 * 25 24 21 27 27 O 1.43297 * 109.65665 * 179.71176 * 21 20 19 28 28 H 1.09000 * 109.47181 * 60.00282 * 1 2 3 29 29 H 1.09001 * 109.46529 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46956 * 300.00077 * 1 2 3 31 31 H 1.09009 * 109.47054 * 299.99983 * 3 2 1 32 32 H 1.08998 * 109.47782 * 180.02562 * 3 2 1 33 33 H 0.97000 * 119.99456 * 0.02562 * 4 3 2 34 34 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 35 35 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 36 36 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 37 37 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 38 38 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 39 39 H 1.08998 * 109.46983 * 299.99930 * 10 9 8 40 40 H 1.08997 * 109.47123 * 59.99717 * 10 9 8 41 41 H 0.96990 * 120.00229 * 180.02562 * 14 13 11 42 42 H 1.08997 * 109.47363 * 179.86332 * 19 2 1 43 43 H 1.08999 * 109.46985 * 299.87338 * 19 2 1 44 44 H 1.09000 * 109.49146 * 299.81779 * 20 19 2 45 45 H 1.09005 * 109.48160 * 179.79291 * 20 19 2 46 46 H 1.08999 * 109.47580 * 299.70109 * 22 21 20 47 47 H 1.08996 * 109.48210 * 179.67869 * 22 21 20 48 48 H 1.09001 * 109.47204 * 60.12656 * 23 2 1 49 49 H 1.09005 * 109.47242 * 180.12850 * 23 2 1 50 50 H 1.08998 * 110.98012 * 277.96857 * 25 24 21 51 51 H 1.08997 * 111.01103 * 154.18822 * 25 24 21 52 52 H 1.08999 * 110.69446 * 206.08106 * 26 25 24 53 53 H 1.08999 * 110.84296 * 82.94850 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 7 1.5514 2.1332 1.1961 5 6 1.8764 3.4237 1.4091 6 8 2.5754 4.0147 0.6087 7 7 1.4225 4.0606 2.5067 8 6 1.7708 5.4652 2.7352 9 6 1.1325 5.9430 4.0410 10 6 1.4968 7.4097 4.2799 11 6 0.8677 7.8805 5.5658 12 1 0.2676 7.2016 6.1536 13 6 1.0581 9.1779 5.9918 14 7 1.7884 10.0047 5.2758 15 14 0.2788 9.7613 7.5861 16 1 0.7814 8.9360 8.7138 17 1 0.6323 11.1848 7.8179 18 1 -1.1972 9.6270 7.4938 19 6 2.0398 -0.7207 1.2496 20 6 1.5266 -2.1622 1.2517 21 6 2.0302 -2.8834 0.0003 22 6 1.5270 -2.1625 -1.2515 23 6 2.0398 -0.7208 -1.2494 24 8 3.4672 -2.8932 0.0007 25 6 3.8281 -4.1712 0.5777 26 6 2.7168 -5.0942 0.0181 27 8 1.5578 -4.2363 0.0007 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6764 1.9564 -0.8901 32 1 3.1298 1.4428 -0.0005 33 1 0.9940 1.6616 1.8348 34 1 0.8651 3.5891 3.1454 35 1 2.8542 5.5645 2.8022 36 1 1.4010 6.0705 1.9076 37 1 0.0491 5.8437 3.9735 38 1 1.5020 5.3377 4.8688 39 1 2.5802 7.5086 4.3476 40 1 1.1277 8.0152 3.4522 41 1 1.9227 10.9173 5.5757 42 1 3.1298 -0.7229 1.2485 43 1 1.6783 -0.2052 2.1393 44 1 0.4366 -2.1602 1.2561 45 1 1.8927 -2.6771 2.1400 46 1 0.4370 -2.1606 -1.2563 47 1 1.8935 -2.6774 -2.1395 48 1 1.6783 -0.2054 -2.1392 49 1 3.1299 -0.7229 -1.2484 50 1 3.7913 -4.1322 1.6664 51 1 4.8114 -4.4917 0.2336 52 1 2.5552 -5.9464 0.6782 53 1 2.9624 -5.4302 -0.9893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892794032.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -170.649035 kcal Electronic energy + Delta-G solvation = -30106.108631 eV Core-core repulsion = 25975.746475 eV Total energy + Delta-G solvation = -4130.362156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.06373 -41.06064 -39.42110 -37.00056 -35.97941 -35.47289 -35.15625 -33.13461 -32.19193 -31.94781 -29.66727 -28.66898 -27.84367 -26.12033 -24.77483 -24.19043 -23.77904 -22.28551 -22.06243 -21.68938 -19.60817 -19.20170 -18.51784 -18.09742 -17.54326 -17.26499 -16.91622 -16.50154 -16.46642 -16.24664 -15.89511 -15.64079 -15.43365 -15.25935 -14.90017 -14.57560 -14.52653 -14.24109 -14.08369 -13.85177 -13.72350 -13.65167 -13.40887 -13.22227 -12.98953 -12.79479 -12.71017 -12.69364 -12.53509 -12.38562 -12.16755 -12.12717 -11.65242 -11.64715 -11.53897 -11.46330 -11.29373 -11.27440 -11.12018 -11.08682 -10.53201 -10.38569 -10.32963 -9.72762 -8.17648 -6.29344 1.42588 1.45803 1.53594 1.73879 2.17445 2.43316 2.45959 2.98007 3.15845 3.35088 3.55397 3.61289 3.69974 3.73301 3.94739 4.01465 4.14915 4.19189 4.24275 4.25422 4.31408 4.35170 4.49315 4.51850 4.58208 4.59831 4.67789 4.71165 4.75811 4.82453 4.89444 4.91705 4.97982 5.01664 5.02253 5.05807 5.07518 5.17478 5.18938 5.20441 5.28276 5.38820 5.48301 5.53087 5.56078 5.56873 5.72983 5.85871 6.03193 6.17535 6.24218 6.87727 7.13634 7.40086 7.60996 8.94178 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025770 B = 0.001604 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.269712 B =17450.607056 C =17843.371695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C 0.152 3.848 4 N -0.726 5.726 5 C 0.696 3.304 6 O -0.642 6.642 7 N -0.730 5.730 8 C 0.150 3.850 9 C -0.100 4.100 10 C 0.023 3.977 11 C -0.542 4.542 12 H 0.067 0.933 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.099 4.099 20 C -0.133 4.133 21 C 0.254 3.746 22 C -0.116 4.116 23 C -0.098 4.098 24 O -0.385 6.385 25 C 0.009 3.991 26 C 0.016 3.984 27 O -0.398 6.398 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.410 0.590 34 H 0.412 0.588 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.068 0.932 39 H -0.008 1.008 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.125 0.875 52 H 0.117 0.883 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 -36.338 -11.249 38.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.061 4.061 3 C 0.028 3.972 4 N -0.384 5.384 5 C 0.396 3.604 6 O -0.524 6.524 7 N -0.386 5.386 8 C 0.025 3.975 9 C -0.138 4.138 10 C -0.015 4.015 11 C -0.580 4.580 12 H 0.085 0.915 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.136 4.136 20 C -0.170 4.170 21 C 0.177 3.823 22 C -0.153 4.153 23 C -0.136 4.136 24 O -0.306 6.306 25 C -0.067 4.067 26 C -0.060 4.060 27 O -0.320 6.320 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.247 0.753 34 H 0.248 0.752 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.010 0.990 40 H 0.011 0.989 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.082 0.918 50 H 0.098 0.902 51 H 0.143 0.857 52 H 0.135 0.865 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.077 -35.526 -12.062 37.533 hybrid contribution -0.250 0.372 1.174 1.257 sum -1.327 -35.153 -10.889 36.825 Atomic orbital electron populations 1.22006 0.92870 1.02872 1.02599 1.20717 0.97001 0.92025 0.96370 1.21203 0.98152 0.91406 0.86433 1.44955 1.56625 1.09539 1.27255 1.16192 0.80151 0.82226 0.81857 1.90893 1.44979 1.67912 1.48656 1.45013 1.56155 1.12861 1.24587 1.21060 0.98872 0.79941 0.97609 1.21584 1.00364 0.96990 0.94824 1.18950 0.95218 0.91828 0.95521 1.21655 1.31595 0.96992 1.07731 0.91465 1.26032 0.95826 0.97186 1.01097 1.70109 1.40608 1.06256 1.40506 0.85460 0.79096 0.77028 0.79191 1.19038 1.21212 1.19023 1.21462 1.00843 0.94030 0.97282 1.22104 1.02540 0.95711 0.96684 1.23437 0.79349 0.83401 0.96103 1.21832 1.02179 0.95246 0.96067 1.21401 1.01014 0.94077 0.97138 1.89272 1.20705 1.37492 1.83087 1.24569 1.00900 0.81720 0.99538 1.24373 0.84035 0.94630 1.02917 1.88858 1.31152 1.16316 1.95659 0.92224 0.90815 0.91941 0.92466 0.93166 0.75264 0.75210 0.93674 0.93612 0.91294 0.91345 0.98974 0.98950 0.92853 0.92193 0.90594 0.89126 0.91237 0.88915 0.91050 0.90291 0.91838 0.90153 0.85743 0.86498 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 7.60 71.98 0.55 -1.02 16 2 C -0.06 -0.80 0.52 -52.19 -0.03 -0.83 16 3 C 0.15 2.98 4.56 86.38 0.39 3.38 16 4 N -0.73 -14.97 4.96 -478.53 -2.37 -17.35 16 5 C 0.70 21.35 8.57 179.06 1.53 22.89 16 6 O -0.64 -26.38 16.34 -4.01 -0.07 -26.45 16 7 N -0.73 -20.76 5.56 -478.52 -2.66 -23.42 16 8 C 0.15 5.48 5.67 86.38 0.49 5.97 16 9 C -0.10 -3.87 5.27 30.60 0.16 -3.71 16 10 C 0.02 1.19 4.97 29.85 0.15 1.33 16 11 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 12 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 13 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 14 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 15 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 C -0.10 -1.28 4.42 30.60 0.14 -1.14 16 20 C -0.13 -1.61 5.00 30.59 0.15 -1.46 16 21 C 0.25 3.52 1.03 30.57 0.03 3.55 16 22 C -0.12 -1.46 5.05 30.59 0.15 -1.31 16 23 C -0.10 -1.30 4.59 30.60 0.14 -1.16 16 24 O -0.38 -5.90 9.66 -126.22 -1.22 -7.12 16 25 C 0.01 0.08 7.91 72.64 0.57 0.65 16 26 C 0.02 0.14 8.07 72.64 0.59 0.73 16 27 O -0.40 -5.82 10.87 -126.22 -1.37 -7.19 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.67 4.81 -2.39 -0.01 0.66 16 30 H 0.06 0.61 6.86 -2.39 -0.02 0.59 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.41 5.79 6.17 -92.71 -0.57 5.21 16 34 H 0.41 8.61 8.49 -92.71 -0.79 7.82 16 35 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 2.48 8.14 -2.38 -0.02 2.47 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.26 15.23 8.31 -92.72 -0.77 14.46 16 42 H 0.06 0.99 7.69 -2.39 -0.02 0.97 16 43 H 0.08 0.86 6.85 -2.39 -0.02 0.84 16 44 H 0.09 0.97 6.44 -2.39 -0.02 0.95 16 45 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.09 1.02 6.44 -2.39 -0.02 1.00 16 47 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 1.02 7.69 -2.38 -0.02 1.00 16 50 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 53 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -75.81 407.13 -0.12 -75.93 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.45 Total: 18.85 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.72 Total: -2.01 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -4.75 Total: -97.92 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -2.66 Total: -40.76 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -75.81 -0.12 -75.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892794032.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.719 kcal (2) G-P(sol) polarization free energy of solvation -75.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds