Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 13 13 N 1.46506 * 109.47075 * 59.99940 * 12 2 1 14 14 C 1.34777 * 120.00264 * 179.97438 * 13 12 2 15 15 O 1.21351 * 119.99901 * 0.02562 * 14 13 12 16 16 C 1.49446 * 119.99872 * 180.02562 * 14 13 12 17 17 O 1.21351 * 120.00227 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99877 * 180.02562 * 16 14 13 19 19 C 1.46506 * 119.99877 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.46684 * 179.97438 * 19 18 16 21 21 C 1.53006 * 109.46997 * 180.02562 * 20 19 18 22 22 H 1.08997 * 110.54803 * 305.70411 * 21 20 19 23 23 C 1.54996 * 110.62064 * 182.82387 * 21 20 19 24 24 C 1.54988 * 102.00978 * 204.59374 * 23 21 20 25 25 C 1.52998 * 110.34237 * 262.02350 * 24 23 21 26 26 C 1.53005 * 110.67985 * 139.47605 * 24 23 21 27 27 C 1.54096 * 104.25321 * 20.66834 * 24 23 21 28 28 O 1.43744 * 107.29638 * 2.16154 * 27 24 23 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47486 * 180.02562 * 12 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 12 2 1 38 38 H 0.96999 * 119.99689 * 0.02562 * 13 12 2 39 39 H 0.96999 * 120.00043 * 359.97438 * 18 16 14 40 40 H 1.08992 * 109.47362 * 300.00138 * 19 18 16 41 41 H 1.09001 * 109.46577 * 59.99939 * 19 18 16 42 42 H 1.09000 * 109.47486 * 300.00065 * 20 19 18 43 43 H 1.09001 * 109.47362 * 60.00788 * 20 19 18 44 44 H 1.08997 * 110.90562 * 322.67262 * 23 21 20 45 45 H 1.09000 * 110.90446 * 86.27632 * 23 21 20 46 46 H 1.08995 * 109.46854 * 176.21520 * 25 24 23 47 47 H 1.08998 * 109.46945 * 296.22060 * 25 24 23 48 48 H 1.09002 * 109.46823 * 56.21875 * 25 24 23 49 49 H 1.08997 * 109.47498 * 303.58361 * 26 24 23 50 50 H 1.09001 * 109.46825 * 63.58694 * 26 24 23 51 51 H 1.09007 * 109.46642 * 183.58409 * 26 24 23 52 52 H 1.08998 * 109.88002 * 242.73813 * 27 24 23 53 53 H 1.09005 * 110.00794 * 121.65930 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4119 10 1 1.3445 -0.9491 5.1123 11 1 2.4880 -2.5654 3.7121 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6696 15 8 2.5754 -1.4774 -3.7809 16 6 1.3800 0.2141 -4.8897 17 8 0.6827 1.2010 -4.7784 18 7 1.7056 -0.2464 -6.1139 19 6 1.2172 0.4443 -7.3100 20 6 1.7278 -0.2766 -8.5592 21 6 1.2183 0.4450 -9.8085 22 1 0.1332 0.5439 -9.7775 23 6 1.6615 -0.3045 -11.0908 24 6 1.6442 0.8281 -12.1486 25 6 0.3394 0.7904 -12.9468 26 6 2.8476 0.7103 -13.0862 27 6 1.7317 2.1236 -11.3189 28 8 1.8433 1.7401 -9.9381 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 0.7082 1.1608 3.4844 36 1 3.1300 -0.7217 -1.2490 37 1 1.6766 -1.7489 -1.2493 38 1 0.9943 0.7582 -2.3564 39 1 2.2633 -1.0350 -6.2029 40 1 0.1273 0.4443 -7.3100 41 1 1.5805 1.4720 -7.3099 42 1 2.8178 -0.2762 -8.5590 43 1 1.3647 -1.3044 -8.5596 44 1 2.6658 -0.7121 -10.9755 45 1 0.9512 -1.0905 -11.3470 46 1 0.3128 1.6317 -13.6393 47 1 0.2829 -0.1431 -13.5066 48 1 -0.5068 0.8558 -12.2629 49 1 3.7668 0.7193 -12.5005 50 1 2.7823 -0.2229 -13.6456 51 1 2.8508 1.5507 -13.7804 52 1 0.8311 2.7198 -11.4663 53 1 2.6090 2.6983 -11.6160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898066861.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -159.975130 kcal Electronic energy + Delta-G solvation = -29506.771337 eV Core-core repulsion = 25376.872036 eV Total energy + Delta-G solvation = -4129.899301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72010 -40.91125 -39.75125 -38.19396 -36.83686 -35.50129 -35.01159 -33.23691 -32.73826 -29.56788 -28.23377 -27.86967 -27.58874 -27.21581 -26.82540 -25.36567 -23.52915 -22.26997 -21.36208 -20.70754 -20.29626 -19.57627 -18.04214 -17.70847 -17.52011 -17.06721 -16.81705 -16.63827 -16.32330 -16.10555 -15.94131 -15.69352 -15.03353 -14.88010 -14.77314 -14.62771 -14.45646 -14.29356 -14.04593 -13.99726 -13.78537 -13.21405 -13.13182 -12.99829 -12.85474 -12.70257 -12.69406 -12.58190 -12.43522 -12.38354 -12.27595 -12.21710 -12.11490 -11.61987 -11.55956 -11.50743 -11.42224 -11.29750 -10.76733 -10.63039 -10.56497 -10.40780 -10.33500 -10.12145 -8.00807 -6.17388 0.34289 1.34659 1.45009 1.48057 1.56128 2.14346 2.45938 2.70683 2.91651 3.23060 3.42732 3.50857 3.63855 3.87731 3.92060 4.07160 4.17509 4.27702 4.34462 4.37823 4.46535 4.47350 4.63972 4.67824 4.70908 4.76842 4.79610 4.82586 4.92150 4.93119 4.98495 5.03948 5.05504 5.05911 5.07294 5.14414 5.17155 5.19670 5.21651 5.23951 5.31572 5.42554 5.47979 5.64633 5.68017 5.93638 5.99982 6.10995 6.18941 6.39231 6.41723 6.74023 6.86830 6.96172 7.50549 8.98502 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.039428 B = 0.001570 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.979749 B =17834.374706 C =18088.829408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.048 3.952 3 C -0.123 4.123 4 C -0.525 4.525 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.498 3.502 15 O -0.550 6.550 16 C 0.511 3.489 17 O -0.544 6.544 18 N -0.686 5.686 19 C 0.120 3.880 20 C -0.117 4.117 21 C 0.076 3.924 22 H 0.077 0.923 23 C -0.137 4.137 24 C -0.099 4.099 25 C -0.138 4.138 26 C -0.136 4.136 27 C 0.048 3.952 28 O -0.398 6.398 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.023 0.977 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.413 0.587 39 H 0.421 0.579 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.066 0.934 51 H 0.062 0.938 52 H 0.060 0.940 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -1.218 -32.727 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.047 3.953 3 C -0.181 4.181 4 C -0.564 4.564 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.021 3.979 13 N -0.334 5.334 14 C 0.279 3.721 15 O -0.429 6.429 16 C 0.291 3.709 17 O -0.422 6.422 18 N -0.340 5.340 19 C -0.003 4.003 20 C -0.155 4.155 21 C 0.019 3.981 22 H 0.095 0.905 23 C -0.174 4.174 24 C -0.100 4.100 25 C -0.195 4.195 26 C -0.193 4.193 27 C -0.029 4.029 28 O -0.318 6.318 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.251 0.749 39 H 0.259 0.741 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.085 0.915 51 H 0.081 0.919 52 H 0.079 0.921 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.191 -0.971 -32.417 32.432 hybrid contribution 0.211 -0.217 1.089 1.131 sum 0.020 -1.188 -31.328 31.350 Atomic orbital electron populations 1.21692 0.97266 0.98917 1.00161 1.18414 0.93251 0.93038 0.90609 1.21697 0.98200 0.98032 1.00156 1.21233 1.31774 1.12283 0.91096 0.92981 1.25503 0.95108 0.95591 1.01168 1.69928 1.36957 1.23453 1.23623 0.85701 0.77949 0.79122 0.79664 1.20557 1.21105 1.19729 1.21554 0.97940 0.95514 0.82929 1.46088 1.50762 1.31461 1.05075 1.20311 0.81673 0.84877 0.85239 1.90708 1.38489 1.26644 1.87085 1.20046 0.81172 0.84383 0.85277 1.90757 1.37958 1.26374 1.87090 1.45733 1.51925 1.32039 1.04290 1.21540 0.99621 0.96551 0.82573 1.21834 1.02737 1.00155 0.90745 1.23146 0.97272 0.82886 0.94833 0.90476 1.23321 1.03405 0.97866 0.92837 1.21981 0.97617 0.94278 0.96100 1.21877 0.95070 1.02839 0.99737 1.21833 0.96058 1.02677 0.98734 1.23449 1.02034 0.96658 0.80736 1.88898 1.79831 1.36032 1.27077 0.95248 0.91807 0.95687 0.91796 0.95778 0.95270 0.93063 0.92698 0.92602 0.74946 0.74128 0.90890 0.91940 0.89887 0.87315 0.89978 0.88458 0.91912 0.91329 0.92556 0.92778 0.91506 0.91872 0.92142 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 2 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 4 C -0.53 -27.47 8.01 25.60 0.21 -27.26 16 5 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 6 C 0.03 1.37 5.15 84.66 0.44 1.80 16 7 N -0.90 -48.57 9.35 21.45 0.20 -48.37 16 8 Si 0.95 42.40 29.54 68.60 2.03 44.42 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.14 6.02 4.50 86.38 0.39 6.41 16 13 N -0.68 -25.33 4.95 -464.40 -2.30 -27.63 16 14 C 0.50 17.35 7.89 87.27 0.69 18.03 16 15 O -0.55 -20.64 16.48 -3.25 -0.05 -20.70 16 16 C 0.51 15.61 7.89 87.27 0.69 16.30 16 17 O -0.54 -19.15 16.48 -3.25 -0.05 -19.20 16 18 N -0.69 -15.45 5.55 -464.41 -2.58 -18.03 16 19 C 0.12 2.25 5.61 86.38 0.48 2.73 16 20 C -0.12 -1.41 5.09 30.60 0.16 -1.25 16 21 C 0.08 0.94 3.30 31.28 0.10 1.04 16 22 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 23 C -0.14 -1.16 5.71 31.96 0.18 -0.98 16 24 C -0.10 -0.86 0.99 -51.13 -0.05 -0.91 16 25 C -0.14 -0.92 8.25 71.98 0.59 -0.32 16 26 C -0.14 -0.99 8.28 71.98 0.60 -0.39 16 27 C 0.05 0.60 7.03 72.35 0.51 1.11 16 28 O -0.40 -7.08 10.98 -148.98 -1.64 -8.71 16 29 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 30 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 31 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 33 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.03 1.18 6.86 -2.39 -0.02 1.17 16 35 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 36 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.41 15.08 5.63 -92.71 -0.52 14.56 16 39 H 0.42 8.04 7.94 -92.71 -0.74 7.30 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.43 7.99 -2.39 -0.02 1.41 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.70 7.79 -2.39 -0.02 0.68 16 45 H 0.10 0.55 7.86 -2.39 -0.02 0.53 16 46 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 52 H 0.06 0.72 7.69 -2.39 -0.02 0.70 16 53 H 0.08 1.01 7.70 -2.38 -0.02 0.99 16 Total: -1.00 -62.38 417.52 1.37 -61.02 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.36 Total: 28.83 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 6.12 Total: 8.37 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -4.68 Total: -94.03 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -1.74 Total: -48.61 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -62.38 1.37 -61.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898066861.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.959 kcal (2) G-P(sol) polarization free energy of solvation -62.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds