Wall clock time and date at job start Sat Apr 11 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.35179 * 2 1 4 4 C 1.54947 * 110.31146 * 122.14056 * 2 1 3 5 5 C 1.55301 * 100.94228 * 155.36020 * 4 2 1 6 6 H 1.09001 * 110.84893 * 84.26548 * 5 4 2 7 7 C 1.53005 * 110.84702 * 207.67720 * 5 4 2 8 8 N 1.46498 * 109.47201 * 290.82546 * 7 5 4 9 9 C 1.34777 * 120.00001 * 179.97438 * 8 7 5 10 10 O 1.21585 * 119.99995 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99847 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.65138 * 0.02954 * 11 9 8 13 13 C 1.54908 * 104.92961 * 204.15299 * 12 11 9 14 14 C 1.55154 * 101.58289 * 322.93718 * 13 12 11 15 15 O 1.42901 * 110.72214 * 276.96079 * 14 13 12 16 16 C 1.50698 * 110.72018 * 153.86513 * 14 13 12 17 17 H 1.08003 * 120.00577 * 359.97438 * 16 14 13 18 18 C 1.37881 * 120.00174 * 179.97438 * 16 14 13 19 19 N 1.31522 * 119.99833 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00393 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46916 * 89.99851 * 20 18 16 22 22 H 1.48497 * 109.46993 * 209.99969 * 20 18 16 23 23 H 1.48497 * 109.47050 * 330.00223 * 20 18 16 24 24 C 1.47290 * 125.79121 * 180.02562 * 11 9 8 25 25 C 1.54377 * 102.43646 * 325.97077 * 5 4 2 26 26 C 1.53006 * 109.83080 * 140.77143 * 25 5 4 27 27 C 1.53010 * 109.82950 * 261.74079 * 25 5 4 28 28 O 1.43580 * 107.41366 * 21.10319 * 25 5 4 29 29 H 1.08999 * 109.47278 * 297.85459 * 1 2 3 30 30 H 1.09000 * 109.47564 * 57.85923 * 1 2 3 31 31 H 1.09006 * 109.46883 * 177.85919 * 1 2 3 32 32 H 1.09004 * 109.46811 * 182.14361 * 3 2 1 33 33 H 1.08997 * 109.46774 * 302.13965 * 3 2 1 34 34 H 1.08997 * 109.47262 * 62.14104 * 3 2 1 35 35 H 1.09004 * 111.12270 * 37.43926 * 4 2 1 36 36 H 1.09002 * 111.16296 * 273.29720 * 4 2 1 37 37 H 1.08998 * 109.46768 * 170.82736 * 7 5 4 38 38 H 1.08998 * 109.47144 * 50.82633 * 7 5 4 39 39 H 0.96998 * 119.99854 * 0.02562 * 8 7 5 40 40 H 1.09002 * 110.36696 * 85.25946 * 12 11 9 41 41 H 1.08995 * 110.36608 * 323.04783 * 12 11 9 42 42 H 1.09008 * 111.00494 * 81.01141 * 13 12 11 43 43 H 1.08999 * 111.00647 * 204.85975 * 13 12 11 44 44 H 0.96693 * 114.00397 * 180.02562 * 15 14 13 45 45 H 0.97000 * 120.00151 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.85762 * 59.50172 * 24 11 9 47 47 H 1.08995 * 110.00297 * 298.43119 * 24 11 9 48 48 H 1.08993 * 109.47198 * 59.99742 * 26 25 5 49 49 H 1.09004 * 109.47049 * 180.02562 * 26 25 5 50 50 H 1.09000 * 109.46649 * 299.99576 * 26 25 5 51 51 H 1.08996 * 109.46746 * 60.00002 * 27 25 5 52 52 H 1.09001 * 109.46975 * 180.02562 * 27 25 5 53 53 H 1.08996 * 109.46797 * 300.00116 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4345 0.0000 4 6 2.0678 -0.7731 1.2304 5 6 3.4699 -1.2025 0.7190 6 1 4.1982 -0.4054 0.8683 7 6 3.9285 -2.4911 1.4047 8 7 4.2108 -2.2193 2.8162 9 6 4.6317 -3.2137 3.6229 10 8 4.7775 -4.3361 3.1789 11 7 4.8910 -2.9638 4.9216 12 6 4.7568 -1.6558 5.5884 13 6 5.7141 -1.7274 6.8041 14 6 5.5408 -3.2032 7.2505 15 8 4.3855 -3.3486 8.0789 16 6 6.7732 -3.6917 7.9672 17 1 7.6161 -3.0304 8.1042 18 6 6.8249 -4.9829 8.4480 19 7 5.7987 -5.7884 8.2808 20 14 8.3527 -5.5887 9.3358 21 1 8.2209 -5.3168 10.7897 22 1 8.5057 -7.0495 9.1172 23 1 9.5461 -4.8812 8.8062 24 6 5.3554 -3.9496 5.9125 25 6 3.2166 -1.4406 -0.7851 26 6 4.4063 -0.9281 -1.5994 27 6 3.0112 -2.9341 -1.0469 28 8 2.0286 -0.7168 -1.1406 29 1 -0.3634 0.4801 0.9086 30 1 -0.3634 0.5467 -0.8701 31 1 -0.3633 -1.0270 -0.0384 32 1 3.1513 1.4179 -0.0384 33 1 1.6758 1.9652 -0.8702 34 1 1.7382 1.9422 0.9085 35 1 1.4470 -1.6415 1.4508 36 1 2.1496 -0.1209 2.1000 37 1 4.8313 -2.8601 0.9180 38 1 3.1423 -3.2423 1.3295 39 1 4.0942 -1.3239 3.1705 40 1 3.7303 -1.5037 5.9222 41 1 5.0585 -0.8538 4.9147 42 1 6.7429 -1.5284 6.5036 43 1 5.3989 -1.0418 7.5906 44 1 4.2324 -4.2528 8.3852 45 1 5.8349 -6.6967 8.6193 46 1 6.3052 -4.3776 5.5920 47 1 4.6134 -4.7396 6.0285 48 1 5.3089 -1.4594 -1.2977 49 1 4.2211 -1.0986 -2.6600 50 1 4.5360 0.1393 -1.4206 51 1 2.1524 -3.2880 -0.4765 52 1 2.8333 -3.0955 -2.1101 53 1 3.9019 -3.4824 -0.7404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927624801.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:28 Heat of formation + Delta-G solvation = -155.407924 kcal Electronic energy + Delta-G solvation = -31531.167499 eV Core-core repulsion = 27401.466247 eV Total energy + Delta-G solvation = -4129.701252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.71024 -41.01741 -39.13496 -36.52474 -36.08509 -35.18381 -34.16192 -33.45117 -31.69997 -30.52834 -29.57554 -28.79137 -27.90047 -27.56269 -26.31603 -24.27249 -23.35142 -21.52910 -21.35823 -21.18653 -20.13990 -19.20266 -18.73737 -17.58464 -17.30552 -16.85590 -16.58407 -16.48011 -16.21105 -15.71507 -15.58375 -15.47531 -14.88897 -14.76076 -14.73118 -14.37902 -14.28109 -14.01430 -13.78527 -13.60407 -13.48298 -13.34216 -13.29954 -12.97920 -12.90455 -12.85125 -12.74467 -12.70549 -12.52966 -12.43582 -12.32063 -12.29463 -12.25372 -12.08529 -11.60272 -11.53091 -11.40164 -11.26171 -11.18886 -10.63307 -10.49152 -10.29589 -10.22641 -9.39560 -8.26775 -6.42374 1.41280 1.43695 1.53111 1.64069 2.14219 2.37850 2.68899 2.99851 3.02309 3.43436 3.55916 3.75969 3.81964 3.96769 4.05427 4.09501 4.14268 4.15610 4.19879 4.29050 4.38353 4.40541 4.58639 4.60380 4.66462 4.69836 4.72457 4.75086 4.79093 4.86001 4.88294 4.94557 4.96702 5.02118 5.04445 5.09695 5.14270 5.15563 5.24487 5.26195 5.33768 5.34853 5.38086 5.43049 5.49449 5.50216 5.76387 6.01736 6.16607 6.24609 6.64390 7.06198 7.29612 7.38937 7.56253 8.79394 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.002393 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.484584 B =11700.272356 C =12185.844730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.096 3.904 3 C -0.158 4.158 4 C -0.140 4.140 5 C -0.114 4.114 6 H 0.109 0.891 7 C 0.153 3.847 8 N -0.726 5.726 9 C 0.710 3.290 10 O -0.645 6.645 11 N -0.635 5.635 12 C 0.108 3.892 13 C -0.111 4.111 14 C 0.233 3.767 15 O -0.589 6.589 16 C -0.556 4.556 17 H 0.069 0.931 18 C 0.024 3.976 19 N -0.918 5.918 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.138 3.862 25 C 0.113 3.887 26 C -0.152 4.152 27 C -0.160 4.160 28 O -0.380 6.380 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.409 0.591 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.378 0.622 45 H 0.271 0.729 46 H 0.030 0.970 47 H 0.024 0.976 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.053 0.947 52 H 0.065 0.935 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.095 16.073 -16.577 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.058 3.942 3 C -0.216 4.216 4 C -0.178 4.178 5 C -0.133 4.133 6 H 0.127 0.873 7 C 0.030 3.970 8 N -0.383 5.383 9 C 0.412 3.588 10 O -0.528 6.528 11 N -0.371 5.371 12 C -0.014 4.014 13 C -0.148 4.148 14 C 0.193 3.807 15 O -0.398 6.398 16 C -0.594 4.594 17 H 0.087 0.913 18 C -0.177 4.177 19 N -0.558 5.558 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.192 1.192 24 C 0.014 3.986 25 C 0.073 3.927 26 C -0.209 4.209 27 C -0.217 4.217 28 O -0.300 6.300 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.246 0.754 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.229 0.771 45 H 0.080 0.920 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.092 0.908 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.072 0.928 52 H 0.084 0.916 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.221 15.724 -17.275 24.450 hybrid contribution 0.739 -1.480 0.945 1.905 sum -6.482 14.244 -16.330 22.618 Atomic orbital electron populations 1.21867 0.92580 1.02406 1.03164 1.22447 0.94906 0.92342 0.84552 1.22194 1.01626 0.94622 1.03118 1.23416 0.94692 1.00828 0.98820 1.22905 0.98755 0.97185 0.94454 0.87322 1.21270 1.00128 0.96944 0.78694 1.44895 1.72327 1.11167 1.09961 1.15726 0.78423 0.84465 0.80191 1.90851 1.62526 1.23864 1.75509 1.47916 1.69353 1.12857 1.07006 1.22396 1.00141 0.84297 0.94551 1.22726 0.99513 0.95772 0.96836 1.19699 0.84107 0.92083 0.84858 1.86054 1.48338 1.35320 1.70078 1.21869 1.01904 0.98090 1.37522 0.91318 1.25839 0.99405 0.96647 0.95796 1.69686 1.31847 1.07782 1.46480 0.85457 0.79579 0.77133 0.78900 1.19698 1.21228 1.19170 1.22435 0.95922 0.90912 0.89297 1.21995 0.86159 0.92055 0.92443 1.22117 0.96430 1.01922 1.00468 1.22200 1.02318 0.94617 1.02560 1.88521 1.42057 1.64430 1.35029 0.89760 0.91868 0.92879 0.92073 0.92083 0.90096 0.91159 0.88078 0.92149 0.92562 0.75449 0.91107 0.87916 0.89827 0.89096 0.77135 0.91995 0.95152 0.95747 0.90846 0.91842 0.91433 0.92824 0.91626 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.95 71.98 0.64 -1.31 16 2 C 0.10 1.44 1.21 -10.13 -0.01 1.43 16 3 C -0.16 -1.85 8.84 71.98 0.64 -1.21 16 4 C -0.14 -2.10 5.34 32.05 0.17 -1.93 16 5 C -0.11 -1.85 2.09 -9.53 -0.02 -1.87 16 6 H 0.11 1.44 7.54 -2.39 -0.02 1.42 16 7 C 0.15 3.57 3.81 86.38 0.33 3.90 16 8 N -0.73 -19.34 5.40 -478.54 -2.58 -21.92 16 9 C 0.71 27.95 8.49 179.06 1.52 29.47 16 10 O -0.64 -31.64 16.68 -3.98 -0.07 -31.71 16 11 N -0.63 -25.48 3.34 -829.08 -2.77 -28.25 16 12 C 0.11 3.33 6.56 86.85 0.57 3.90 16 13 C -0.11 -4.05 6.22 31.98 0.20 -3.85 16 14 C 0.23 11.17 0.86 -10.35 -0.01 11.17 16 15 O -0.59 -29.75 13.10 -148.98 -1.95 -31.70 16 16 C -0.56 -28.90 8.10 25.60 0.21 -28.69 16 17 H 0.07 3.45 7.76 -2.91 -0.02 3.43 16 18 C 0.02 1.24 5.28 84.65 0.45 1.68 16 19 N -0.92 -50.12 10.98 21.45 0.24 -49.89 16 20 Si 0.96 41.96 29.54 68.60 2.03 43.99 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.14 6.91 5.56 86.68 0.48 7.39 16 25 C 0.11 1.95 1.22 -10.32 -0.01 1.94 16 26 C -0.15 -2.23 8.76 71.98 0.63 -1.60 16 27 C -0.16 -3.01 7.64 71.99 0.55 -2.46 16 28 O -0.38 -7.33 10.07 -148.98 -1.50 -8.83 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.70 7.30 -2.38 -0.02 0.68 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 1.26 7.89 -2.38 -0.02 1.24 16 36 H 0.10 1.17 8.03 -2.39 -0.02 1.15 16 37 H 0.06 1.52 7.41 -2.39 -0.02 1.50 16 38 H 0.06 1.50 6.73 -2.39 -0.02 1.48 16 39 H 0.41 8.14 6.90 -92.71 -0.64 7.50 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.10 2.22 7.29 -2.39 -0.02 2.20 16 42 H 0.08 2.92 8.02 -2.38 -0.02 2.90 16 43 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.38 20.23 6.98 -74.06 -0.52 19.72 16 45 H 0.27 14.16 8.31 -92.71 -0.77 13.38 16 46 H 0.03 1.67 7.81 -2.38 -0.02 1.65 16 47 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 48 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.07 0.89 7.91 -2.39 -0.02 0.87 16 51 H 0.05 1.10 7.55 -2.39 -0.02 1.08 16 52 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.07 1.37 6.60 -2.39 -0.02 1.35 16 Total: -1.00 -68.00 408.89 -0.53 -68.53 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: -0.26 Total: 41.82 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.33 Total: 17.96 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -5.11 Total: -100.05 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -3.52 Total: -72.24 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -68.00 -0.53 -68.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927624801.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.880 kcal (2) G-P(sol) polarization free energy of solvation -68.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds