Wall clock time and date at job start Sat Apr 11 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.67498 * 2 1 4 4 C 1.54999 * 110.61807 * 122.96440 * 2 1 3 5 5 C 1.54810 * 102.09121 * 81.47615 * 4 2 1 6 6 H 1.08996 * 110.48973 * 262.07232 * 5 4 2 7 7 C 1.53002 * 110.48716 * 139.55583 * 5 4 2 8 8 N 1.46497 * 109.47117 * 66.45434 * 7 5 4 9 9 C 1.34773 * 120.00080 * 179.72581 * 8 7 5 10 10 O 1.21587 * 119.99767 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00321 * 180.02562 * 9 8 7 12 12 C 1.47431 * 125.64352 * 359.68583 * 11 9 8 13 13 C 1.55130 * 104.71688 * 155.81950 * 12 11 9 14 14 C 1.55164 * 101.48738 * 37.29827 * 13 12 11 15 15 O 1.42902 * 110.86895 * 82.76320 * 14 13 12 16 16 C 1.50699 * 110.71743 * 205.96817 * 14 13 12 17 17 H 1.08004 * 119.99989 * 117.82074 * 16 14 13 18 18 C 1.37874 * 120.00043 * 297.81619 * 16 14 13 19 19 N 1.31516 * 120.00150 * 183.91887 * 18 16 14 20 20 Si 1.86807 * 120.00114 * 3.92049 * 18 16 14 21 21 H 1.48493 * 109.47212 * 84.71251 * 20 18 16 22 22 H 1.48499 * 109.47021 * 204.71692 * 20 18 16 23 23 H 1.48503 * 109.46893 * 324.71412 * 20 18 16 24 24 C 1.47020 * 125.65069 * 180.02562 * 11 9 8 25 25 C 1.54105 * 104.18482 * 20.88149 * 5 4 2 26 26 C 1.52997 * 109.87815 * 121.45747 * 25 5 4 27 27 C 1.53002 * 109.87329 * 242.60039 * 25 5 4 28 28 O 1.43741 * 107.29859 * 2.03028 * 25 5 4 29 29 H 1.09000 * 109.46896 * 312.70292 * 1 2 3 30 30 H 1.09004 * 109.47076 * 72.69957 * 1 2 3 31 31 H 1.09002 * 109.47510 * 192.69922 * 1 2 3 32 32 H 1.09001 * 109.47166 * 182.96503 * 3 2 1 33 33 H 1.09006 * 109.47530 * 302.96516 * 3 2 1 34 34 H 1.08994 * 109.47477 * 62.96579 * 3 2 1 35 35 H 1.09000 * 110.90706 * 323.27659 * 4 2 1 36 36 H 1.09005 * 110.90434 * 199.67241 * 4 2 1 37 37 H 1.09003 * 109.46867 * 306.45433 * 7 5 4 38 38 H 1.09000 * 109.46991 * 186.45522 * 7 5 4 39 39 H 0.96998 * 119.99722 * 359.97438 * 8 7 5 40 40 H 1.08997 * 110.36809 * 274.74990 * 12 11 9 41 41 H 1.09000 * 110.36381 * 37.07543 * 12 11 9 42 42 H 1.08998 * 111.19235 * 279.19122 * 13 12 11 43 43 H 1.08999 * 110.93721 * 155.29089 * 13 12 11 44 44 H 0.96705 * 113.99459 * 184.93422 * 15 14 13 45 45 H 0.96996 * 120.00246 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.88240 * 300.43953 * 24 11 9 47 47 H 1.08997 * 109.88552 * 61.44661 * 24 11 9 48 48 H 1.08995 * 109.47727 * 59.99108 * 26 25 5 49 49 H 1.09000 * 109.47725 * 180.02562 * 26 25 5 50 50 H 1.09006 * 109.46992 * 299.99461 * 26 25 5 51 51 H 1.08994 * 109.46963 * 58.30058 * 27 25 5 52 52 H 1.09009 * 109.46670 * 178.28999 * 27 25 5 53 53 H 1.09000 * 109.47599 * 298.29284 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0758 -0.7894 1.2172 5 6 1.9799 -2.2535 0.7235 6 1 1.0729 -2.7250 1.1016 7 6 3.2147 -3.0465 1.1566 8 7 3.2263 -3.1735 2.6160 9 6 4.2245 -3.8426 3.2263 10 8 5.1156 -4.3403 2.5656 11 7 4.2350 -3.9599 4.5689 12 6 3.2259 -3.4025 5.4879 13 6 3.3152 -4.2906 6.7568 14 6 4.8418 -4.5545 6.8423 15 8 5.5119 -3.4652 7.4799 16 6 5.1197 -5.8465 7.5667 17 1 5.6175 -6.6566 7.0544 18 6 4.7385 -5.9944 8.8834 19 7 5.0489 -7.0916 9.5386 20 14 3.7810 -4.6362 9.7368 21 1 2.3338 -4.7908 9.4426 22 1 4.0002 -4.7222 11.2030 23 1 4.2482 -3.3158 9.2431 24 6 5.2583 -4.6588 5.3600 25 6 1.9283 -2.1318 -0.8118 26 6 3.0940 -2.9027 -1.4343 27 6 0.5994 -2.6827 -1.3328 28 8 2.0384 -0.7352 -1.1338 29 1 -0.3633 0.6970 0.7552 30 1 -0.3633 0.3056 -0.9812 31 1 -0.3634 -1.0025 0.2259 32 1 3.1586 1.4091 -0.0532 33 1 1.6753 1.9689 -0.8622 34 1 1.7615 1.9363 0.9153 35 1 1.4489 -0.6330 2.0950 36 1 3.1102 -0.5161 1.4258 37 1 4.1144 -2.5249 0.8301 38 1 3.1859 -4.0385 0.7058 39 1 2.5137 -2.7792 3.1428 40 1 3.4637 -2.3666 5.7295 41 1 2.2316 -3.4714 5.0464 42 1 2.7644 -5.2219 6.6255 43 1 2.9622 -3.7509 7.6355 44 1 6.4753 -3.5479 7.4901 45 1 4.7805 -7.1958 10.4648 46 1 5.3065 -5.7060 5.0614 47 1 6.2290 -4.1860 5.2110 48 1 3.0254 -3.9538 -1.1543 49 1 3.0515 -2.8119 -2.5197 50 1 4.0363 -2.4911 -1.0725 51 1 -0.2250 -2.1353 -0.8760 52 1 0.5572 -2.5657 -2.4158 53 1 0.5192 -3.7395 -1.0782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927624811.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:40 Heat of formation + Delta-G solvation = -139.190959 kcal Electronic energy + Delta-G solvation = -31599.562364 eV Core-core repulsion = 27470.564333 eV Total energy + Delta-G solvation = -4128.998032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.81676 -41.14902 -39.33477 -36.51685 -36.15377 -35.05514 -34.49730 -33.44868 -31.88440 -30.80949 -29.94145 -29.15986 -27.78426 -27.42639 -26.19534 -24.17121 -23.33402 -21.70088 -21.32290 -21.15468 -20.37498 -19.49121 -18.85709 -17.55496 -17.20567 -16.82110 -16.67766 -16.55481 -16.47473 -15.90259 -15.81370 -15.41687 -15.03927 -14.99945 -14.74897 -14.44203 -14.07076 -14.05624 -13.97498 -13.81472 -13.76434 -13.37277 -13.20024 -13.14035 -13.01768 -12.95902 -12.83777 -12.76569 -12.73101 -12.36320 -12.26630 -12.14835 -12.06268 -11.83940 -11.61259 -11.43382 -11.33781 -11.24969 -10.95266 -10.78350 -10.58428 -10.34957 -10.23467 -9.46849 -8.34862 -6.51064 1.39500 1.48821 1.56994 1.70612 2.10345 2.41715 2.77416 2.97259 3.01038 3.47963 3.51811 3.56073 3.75740 3.79384 3.95339 4.03601 4.06924 4.10746 4.22194 4.26038 4.32511 4.39387 4.43439 4.55179 4.56621 4.63397 4.68288 4.74063 4.76172 4.80688 4.84749 4.87960 4.92960 4.94790 4.97720 5.03632 5.08389 5.09724 5.11462 5.21854 5.27036 5.31679 5.35600 5.45342 5.45863 5.49422 5.52793 6.06372 6.08404 6.15859 6.59919 6.97832 7.12076 7.30267 7.51932 8.79511 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020615 B = 0.002499 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.899645 B =11202.979198 C =11746.091542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.116 4.116 6 H 0.109 0.891 7 C 0.151 3.849 8 N -0.727 5.727 9 C 0.715 3.285 10 O -0.640 6.640 11 N -0.631 5.631 12 C 0.111 3.889 13 C -0.127 4.127 14 C 0.218 3.782 15 O -0.571 6.571 16 C -0.553 4.553 17 H 0.033 0.967 18 C 0.034 3.966 19 N -0.938 5.938 20 Si 0.941 3.059 21 H -0.265 1.265 22 H -0.310 1.310 23 H -0.210 1.210 24 C 0.123 3.877 25 C 0.109 3.891 26 C -0.154 4.154 27 C -0.170 4.170 28 O -0.379 6.379 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.409 0.591 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.376 0.624 45 H 0.268 0.732 46 H 0.043 0.957 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.054 0.946 51 H 0.078 0.922 52 H 0.060 0.940 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.217 17.447 -18.815 29.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C -0.197 4.197 4 C -0.177 4.177 5 C -0.135 4.135 6 H 0.128 0.872 7 C 0.028 3.972 8 N -0.384 5.384 9 C 0.416 3.584 10 O -0.522 6.522 11 N -0.367 5.367 12 C -0.011 4.011 13 C -0.165 4.165 14 C 0.177 3.823 15 O -0.379 6.379 16 C -0.591 4.591 17 H 0.051 0.949 18 C -0.166 4.166 19 N -0.577 5.577 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.239 1.239 23 H -0.133 1.133 24 C -0.001 4.001 25 C 0.069 3.931 26 C -0.211 4.211 27 C -0.227 4.227 28 O -0.300 6.300 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.246 0.754 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.225 0.775 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.073 0.927 51 H 0.096 0.904 52 H 0.079 0.921 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.111 17.319 -19.389 29.581 hybrid contribution 0.538 -0.576 0.928 1.217 sum -13.574 16.744 -18.461 28.380 Atomic orbital electron populations 1.22425 0.93518 1.03421 1.03075 1.22633 0.94368 0.92968 0.84715 1.21775 1.01137 0.93469 1.03277 1.23308 1.02485 0.92897 0.99047 1.22771 0.98416 0.96625 0.95694 0.87246 1.21407 0.97955 1.00007 0.77879 1.44941 1.26470 1.58900 1.08085 1.15621 0.82719 0.79625 0.80398 1.90867 1.40734 1.55994 1.64606 1.47603 1.28125 1.57455 1.03556 1.22455 0.92152 0.97629 0.88887 1.23050 0.95514 1.00133 0.97810 1.19793 0.90894 0.84913 0.86672 1.86434 1.23786 1.46780 1.80854 1.21427 1.40696 0.99482 0.97450 0.94886 1.25833 0.95438 0.97635 0.97699 1.70075 1.46906 1.29366 1.11338 0.86057 0.79022 0.82901 0.75418 1.19001 1.23883 1.13262 1.22311 0.90679 0.95338 0.91810 1.21979 0.96258 0.82476 0.92381 1.22065 0.97323 1.00137 1.01537 1.22519 0.96143 1.01914 1.02089 1.88940 1.84220 1.16704 1.40126 0.90142 0.92046 0.90941 0.92896 0.91884 0.89496 0.87984 0.91312 0.92782 0.91863 0.75426 0.89854 0.87967 0.90165 0.90077 0.77529 0.92309 0.93877 0.92749 0.90349 0.91737 0.92734 0.90362 0.92073 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 7.91 71.98 0.57 -1.09 16 2 C 0.09 1.25 1.25 -10.11 -0.01 1.24 16 3 C -0.14 -1.74 8.99 71.98 0.65 -1.10 16 4 C -0.14 -1.83 5.29 31.90 0.17 -1.66 16 5 C -0.12 -1.65 2.25 -9.80 -0.02 -1.68 16 6 H 0.11 1.20 7.70 -2.39 -0.02 1.18 16 7 C 0.15 3.16 3.79 86.38 0.33 3.49 16 8 N -0.73 -17.04 5.36 -478.54 -2.56 -19.61 16 9 C 0.71 24.61 8.49 179.06 1.52 26.13 16 10 O -0.64 -27.77 16.67 -3.99 -0.07 -27.84 16 11 N -0.63 -21.79 3.32 -829.31 -2.76 -24.55 16 12 C 0.11 3.07 6.58 86.93 0.57 3.64 16 13 C -0.13 -4.61 4.86 32.07 0.16 -4.46 16 14 C 0.22 9.34 0.67 -10.35 -0.01 9.33 16 15 O -0.57 -23.01 10.41 -148.98 -1.55 -24.56 16 16 C -0.55 -29.84 8.81 25.60 0.23 -29.62 16 17 H 0.03 2.03 7.81 -2.91 -0.02 2.00 16 18 C 0.03 1.88 5.47 84.65 0.46 2.35 16 19 N -0.94 -56.69 13.96 21.45 0.30 -56.39 16 20 Si 0.94 41.92 23.91 68.60 1.64 43.56 16 21 H -0.26 -10.92 7.09 99.48 0.70 -10.21 16 22 H -0.31 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.21 -8.73 5.49 99.48 0.55 -8.19 16 24 C 0.12 5.09 6.21 86.73 0.54 5.62 16 25 C 0.11 1.70 1.14 -10.42 -0.01 1.69 16 26 C -0.15 -2.64 7.71 71.98 0.55 -2.09 16 27 C -0.17 -2.09 8.37 71.98 0.60 -1.48 16 28 O -0.38 -7.08 10.35 -148.98 -1.54 -8.62 16 29 H 0.08 0.58 8.11 -2.39 -0.02 0.56 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.07 0.64 5.21 -2.39 -0.01 0.63 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.92 8.05 -2.39 -0.02 0.90 16 36 H 0.07 1.12 7.74 -2.38 -0.02 1.11 16 37 H 0.05 1.33 6.85 -2.39 -0.02 1.32 16 38 H 0.06 1.44 6.65 -2.39 -0.02 1.42 16 39 H 0.41 7.01 6.79 -92.71 -0.63 6.38 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.10 2.01 7.28 -2.39 -0.02 1.99 16 42 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 43 H 0.08 2.86 5.04 -2.39 -0.01 2.85 16 44 H 0.38 13.53 9.08 -74.05 -0.67 12.85 16 45 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.04 2.01 7.65 -2.39 -0.02 1.99 16 47 H 0.05 2.23 8.06 -2.39 -0.02 2.21 16 48 H 0.08 1.26 6.80 -2.39 -0.02 1.25 16 49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.05 1.08 6.75 -2.38 -0.02 1.07 16 51 H 0.08 0.81 4.85 -2.39 -0.01 0.80 16 52 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 53 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -73.35 393.38 -0.79 -74.14 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.54 Total: 33.54 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 6.29 Total: 10.32 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -5.02 Total: -100.55 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -3.16 Total: -61.01 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.64 Total: 43.56 kcal Total: -73.35 -0.79 -74.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927624811.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.049 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds