Wall clock time and date at job start Sat Apr 11 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.52047 * 2 1 4 4 C 1.53177 * 109.52123 * 120.12360 * 2 1 3 5 5 C 1.53179 * 109.10692 * 176.84380 * 4 2 1 6 6 C 1.53100 * 109.15719 * 303.14927 * 5 4 2 7 7 H 1.08996 * 109.41956 * 297.49202 * 6 5 4 8 8 C 1.53004 * 109.48236 * 177.50234 * 6 5 4 9 9 C 1.52997 * 109.47292 * 174.97117 * 8 6 5 10 10 N 1.46496 * 109.47487 * 179.97438 * 9 8 6 11 11 C 1.34779 * 120.00199 * 179.97438 * 10 9 8 12 12 O 1.21349 * 119.99880 * 0.02562 * 11 10 9 13 13 C 1.49455 * 119.99952 * 180.02562 * 11 10 9 14 14 O 1.21345 * 120.00006 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99602 * 180.02562 * 13 11 10 16 16 C 1.46500 * 119.99376 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47014 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.47364 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47012 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00136 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99673 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00206 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99769 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47614 * 59.99367 * 23 21 19 25 25 H 1.48504 * 109.47000 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46959 * 299.99127 * 23 21 19 27 27 O 1.42905 * 109.48516 * 57.47822 * 6 5 4 28 28 C 1.42902 * 114.09897 * 298.88856 * 27 6 5 29 29 H 1.08993 * 109.47432 * 299.87391 * 1 2 3 30 30 H 1.09006 * 109.46991 * 59.87861 * 1 2 3 31 31 H 1.09000 * 109.47049 * 179.87377 * 1 2 3 32 32 H 1.09000 * 109.46732 * 180.12340 * 3 2 1 33 33 H 1.09001 * 109.46869 * 300.12196 * 3 2 1 34 34 H 1.08995 * 109.46815 * 60.12415 * 3 2 1 35 35 H 1.09002 * 109.54459 * 296.75600 * 4 2 1 36 36 H 1.08999 * 109.54390 * 56.93522 * 4 2 1 37 37 H 1.08997 * 109.52685 * 62.97182 * 5 4 2 38 38 H 1.08999 * 109.52226 * 183.15941 * 5 4 2 39 39 H 1.09002 * 109.47096 * 294.97301 * 8 6 5 40 40 H 1.08995 * 109.47030 * 54.97263 * 8 6 5 41 41 H 1.09002 * 109.47200 * 300.00677 * 9 8 6 42 42 H 1.09006 * 109.47291 * 59.99852 * 9 8 6 43 43 H 0.97001 * 119.99825 * 0.02562 * 10 9 8 44 44 H 0.96995 * 120.00657 * 359.97438 * 15 13 11 45 45 H 1.08999 * 109.47300 * 299.99421 * 16 15 13 46 46 H 1.08995 * 109.47345 * 60.00015 * 16 15 13 47 47 H 1.09002 * 109.47200 * 299.99905 * 17 16 15 48 48 H 1.09006 * 109.47291 * 59.99637 * 17 16 15 49 49 H 1.08999 * 109.47028 * 299.99577 * 18 17 16 50 50 H 1.08995 * 109.47267 * 59.99957 * 18 17 16 51 51 H 0.96993 * 120.00044 * 180.02562 * 22 21 19 52 52 H 1.09006 * 109.47676 * 301.17676 * 28 27 6 53 53 H 1.09001 * 109.49275 * 181.14973 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0418 -0.7246 1.2487 5 6 3.5715 -0.7883 1.1998 6 6 4.0043 -1.4816 -0.0948 7 1 3.6317 -2.5059 -0.0994 8 6 5.5319 -1.4939 -0.1810 9 6 5.9670 -2.2952 -1.4096 10 7 7.4295 -2.3065 -1.4925 11 6 8.0424 -2.9573 -2.5012 12 8 7.3826 -3.5337 -3.3409 13 6 9.5345 -2.9693 -2.5854 14 8 10.1942 -2.3934 -1.7454 15 7 10.1472 -3.6197 -3.5943 16 6 11.6098 -3.6309 -3.6772 17 6 12.0449 -4.4328 -4.9054 18 6 13.5724 -4.4451 -4.9916 19 6 14.0009 -5.2344 -6.2018 20 1 13.2580 -5.6828 -6.8448 21 6 15.3414 -5.3850 -6.4875 22 7 16.2460 -4.8393 -5.7042 23 14 15.8725 -6.3627 -7.9878 24 1 15.3132 -5.7345 -9.2116 25 1 17.3551 -6.3747 -8.0715 26 1 15.3715 -7.7560 -7.8735 27 8 3.4694 -0.7749 -1.2158 28 6 2.0416 -0.7255 -1.2472 29 1 -0.3634 0.5118 0.8910 30 1 -0.3633 0.5157 -0.8889 31 1 -0.3633 -1.0277 -0.0023 32 1 3.1313 1.4411 -0.0022 33 1 1.6765 1.9568 -0.8889 34 1 1.6802 1.9555 0.8911 35 1 1.7278 -0.1812 2.1400 36 1 1.6355 -1.7356 1.2759 37 1 3.9792 0.2223 1.2242 38 1 3.9402 -1.3516 2.0570 39 1 5.8993 -0.4711 -0.2655 40 1 5.9428 -1.9545 0.7173 41 1 5.5995 -3.3180 -1.3251 42 1 5.5560 -1.8347 -2.3081 43 1 7.9569 -1.8461 -0.8211 44 1 9.6199 -4.0804 -4.2656 45 1 11.9768 -2.6081 -3.7620 46 1 12.0211 -4.0912 -2.7789 47 1 11.6780 -5.4556 -4.8202 48 1 11.6335 -3.9729 -5.8040 49 1 13.9397 -3.4224 -5.0767 50 1 13.9834 -4.9052 -4.0931 51 1 17.1889 -4.9449 -5.9053 52 1 1.6432 -1.7400 -1.2667 53 1 1.7157 -0.1898 -2.1388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929987697.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:07 Heat of formation + Delta-G solvation = -179.325895 kcal Electronic energy + Delta-G solvation = -28698.062297 eV Core-core repulsion = 24567.323884 eV Total energy + Delta-G solvation = -4130.738413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.73277 -40.94686 -39.68809 -37.34664 -36.93159 -35.96705 -35.19531 -33.98288 -33.03635 -31.27000 -29.01988 -28.18478 -27.57575 -26.57349 -25.62232 -24.16126 -23.00407 -22.44169 -22.36274 -21.25160 -19.79674 -19.49577 -18.50170 -17.96199 -17.56180 -17.16529 -16.90491 -16.55487 -16.32076 -16.26546 -16.14610 -15.92404 -15.43716 -15.25495 -15.08306 -14.88741 -14.53638 -14.26053 -14.10776 -13.78056 -13.56460 -13.50807 -13.13350 -12.94600 -12.92947 -12.85362 -12.72518 -12.65624 -12.54222 -12.44107 -12.43070 -12.38575 -11.86337 -11.73716 -11.69151 -11.55355 -11.32896 -11.24377 -11.08702 -10.70752 -10.53481 -10.37648 -10.28370 -10.21957 -8.18643 -6.29684 0.30171 1.28067 1.42770 1.45240 1.53151 2.10115 2.42379 2.61203 2.85531 3.15282 3.39910 3.62341 3.73021 3.82886 3.87218 4.08590 4.08732 4.16137 4.18580 4.21332 4.32050 4.46435 4.52946 4.55124 4.64367 4.72854 4.74706 4.80988 4.83148 4.86809 4.90420 4.91979 4.99592 5.01043 5.08611 5.09169 5.13855 5.15192 5.17842 5.23276 5.24686 5.32898 5.40768 5.51952 5.53797 5.71359 5.84974 5.88431 6.23570 6.31530 6.34806 6.70174 6.86949 6.90512 7.39712 8.93056 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.038807 B = 0.001310 C = 0.001289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.340684 B =21364.031994 C =21722.799319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 C -0.136 4.136 4 C -0.112 4.112 5 C -0.148 4.148 6 C 0.092 3.908 7 H 0.065 0.935 8 C -0.117 4.117 9 C 0.121 3.879 10 N -0.687 5.687 11 C 0.512 3.488 12 O -0.542 6.542 13 C 0.502 3.498 14 O -0.547 6.547 15 N -0.687 5.687 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.025 3.975 19 C -0.545 4.545 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.285 1.285 26 H -0.267 1.267 27 O -0.394 6.394 28 C 0.067 3.933 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.421 0.579 44 H 0.419 0.581 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.066 0.934 49 H -0.004 1.004 50 H -0.003 1.003 51 H 0.263 0.737 52 H 0.054 0.946 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.888 10.148 16.736 40.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 C -0.193 4.193 4 C -0.149 4.149 5 C -0.185 4.185 6 C 0.034 3.966 7 H 0.083 0.917 8 C -0.155 4.155 9 C -0.001 4.001 10 N -0.340 5.340 11 C 0.292 3.708 12 O -0.420 6.420 13 C 0.283 3.717 14 O -0.426 6.426 15 N -0.339 5.339 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.583 4.583 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.573 5.573 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.192 1.192 27 O -0.314 6.314 28 C -0.009 4.009 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.258 0.742 44 H 0.256 0.744 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.015 0.985 50 H 0.015 0.985 51 H 0.072 0.928 52 H 0.072 0.928 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -34.601 10.255 16.620 39.732 hybrid contribution 0.610 -0.444 -0.590 0.958 sum -33.991 9.811 16.030 38.841 Atomic orbital electron populations 1.21785 0.93170 1.02258 1.02433 1.21188 0.96562 0.96373 0.95890 1.21801 1.01173 0.94736 1.01633 1.21674 0.95001 1.00751 0.97470 1.22217 0.96573 1.02128 0.97616 1.22071 0.92749 0.95369 0.86397 0.91717 1.21822 0.94210 1.01697 0.97727 1.21530 0.77196 1.01302 1.00113 1.45766 1.08828 1.52186 1.27270 1.19965 0.87946 0.80163 0.82684 1.90761 1.66612 1.44373 1.40254 1.20324 0.88974 0.80055 0.82388 1.90744 1.67037 1.44505 1.40267 1.45891 1.08412 1.52039 1.27557 1.21483 0.77645 1.00982 0.99494 1.21647 0.97331 0.99556 0.95903 1.18929 0.91040 0.95579 0.95711 1.21660 0.92360 1.33258 1.10986 0.91803 1.25960 0.96970 0.96884 0.99924 1.70087 1.01285 1.46045 1.39872 0.85510 0.76928 0.79278 0.79382 1.19204 1.21012 1.19154 1.87932 1.20979 1.76563 1.45890 1.22730 0.80322 0.99749 0.98115 0.91907 0.92274 0.92185 0.92815 0.92950 0.92316 0.90809 0.91429 0.90999 0.89428 0.89970 0.87554 0.90969 0.91535 0.74182 0.74367 0.91714 0.91627 0.91449 0.91509 0.98527 0.98476 0.92785 0.92806 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.49 71.98 0.61 -0.29 16 2 C -0.10 -0.84 0.77 -52.09 -0.04 -0.88 16 3 C -0.14 -1.31 8.08 71.98 0.58 -0.73 16 4 C -0.11 -0.81 4.81 30.71 0.15 -0.66 16 5 C -0.15 -1.13 5.06 30.69 0.16 -0.97 16 6 C 0.09 0.95 2.64 30.63 0.08 1.03 16 7 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 8 C -0.12 -1.16 5.04 30.59 0.15 -1.01 16 9 C 0.12 1.91 5.57 86.38 0.48 2.39 16 10 N -0.69 -13.15 5.55 -464.41 -2.58 -15.72 16 11 C 0.51 13.30 7.89 87.27 0.69 13.99 16 12 O -0.54 -16.34 16.48 -3.24 -0.05 -16.39 16 13 C 0.50 14.83 7.89 87.27 0.69 15.52 16 14 O -0.55 -18.30 16.48 -3.23 -0.05 -18.36 16 15 N -0.69 -20.40 5.55 -464.42 -2.58 -22.98 16 16 C 0.13 4.37 5.67 86.38 0.49 4.86 16 17 C -0.11 -4.13 5.27 30.59 0.16 -3.97 16 18 C 0.03 1.29 4.97 29.85 0.15 1.44 16 19 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 21 C 0.00 0.03 5.46 84.66 0.46 0.49 16 22 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 23 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 O -0.39 -5.73 9.37 -148.98 -1.40 -7.12 16 28 C 0.07 0.74 5.54 72.01 0.40 1.14 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.05 0.64 6.15 -2.39 -0.01 0.62 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.07 0.63 6.64 -2.39 -0.02 0.62 16 38 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.30 7.82 -2.38 -0.02 1.28 16 43 H 0.42 6.81 7.94 -92.71 -0.74 6.07 16 44 H 0.42 11.25 7.94 -92.71 -0.74 10.51 16 45 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 49 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 50 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 51 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 52 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 53 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -69.39 425.22 0.51 -68.88 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -0.58 Total: 19.93 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.44 Total: 2.10 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -4.87 Total: -95.00 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.50 Total: -41.87 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -69.39 0.51 -68.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929987697.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.449 kcal (2) G-P(sol) polarization free energy of solvation -69.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds