Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99523 * 2 1 4 4 H 1.48497 * 109.46768 * 239.99724 * 3 2 1 5 5 H 1.48496 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46869 * 119.99974 * 3 2 1 7 7 C 1.37870 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99933 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47147 * 299.99912 * 9 7 2 11 11 O 1.42905 * 109.46757 * 60.00130 * 9 7 2 12 12 C 1.53001 * 109.47107 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.46908 * 177.61288 * 12 9 7 14 14 C 1.47904 * 111.00172 * 294.30345 * 13 12 9 15 15 C 1.53992 * 107.05728 * 214.15635 * 14 13 12 16 16 C 1.54597 * 105.14270 * 1.22548 * 15 14 13 17 17 C 1.48534 * 110.99797 * 176.90628 * 13 12 9 18 18 H 1.09001 * 110.66462 * 41.29028 * 17 13 12 19 19 C 1.52995 * 110.66880 * 278.15711 * 17 13 12 20 20 O 1.45202 * 109.47243 * 299.74224 * 19 17 13 21 21 C 1.34634 * 117.00135 * 180.02562 * 20 19 17 22 22 O 1.21516 * 119.99946 * 359.97438 * 21 20 19 23 23 N 1.34780 * 119.99986 * 179.97438 * 21 20 19 24 24 C 1.46503 * 119.99899 * 179.97438 * 23 21 20 25 25 C 1.52997 * 109.47296 * 274.99924 * 24 23 21 26 26 C 1.52991 * 109.47236 * 180.02562 * 25 24 23 27 27 C 1.53007 * 109.47297 * 59.99721 * 26 25 24 28 28 C 1.52997 * 109.46829 * 299.99903 * 27 26 25 29 29 C 1.52998 * 109.46962 * 154.99569 * 24 23 21 30 30 H 0.97003 * 120.00400 * 359.97438 * 1 2 3 31 31 H 0.96695 * 114.00326 * 60.00162 * 11 9 7 32 32 H 1.09005 * 109.46861 * 57.61508 * 12 9 7 33 33 H 1.08993 * 109.47290 * 297.61912 * 12 9 7 34 34 H 1.08997 * 109.91717 * 94.80418 * 14 13 12 35 35 H 1.09003 * 109.91542 * 333.50685 * 14 13 12 36 36 H 1.08997 * 110.30779 * 120.14012 * 15 14 13 37 37 H 1.08998 * 110.30723 * 242.20975 * 15 14 13 38 38 H 1.09000 * 110.72363 * 140.31110 * 16 15 14 39 39 H 1.08993 * 110.72636 * 263.60180 * 16 15 14 40 40 H 1.08999 * 109.47280 * 59.74086 * 19 17 13 41 41 H 1.08999 * 109.47232 * 179.74222 * 19 17 13 42 42 H 0.96995 * 120.00224 * 359.97438 * 23 21 20 43 43 H 1.09007 * 109.47088 * 34.99848 * 24 23 21 44 44 H 1.09001 * 109.46972 * 300.00444 * 25 24 23 45 45 H 1.09000 * 109.47158 * 59.99610 * 25 24 23 46 46 H 1.09001 * 109.47286 * 299.99986 * 26 25 24 47 47 H 1.08999 * 109.47403 * 180.02562 * 26 25 24 48 48 H 1.09002 * 109.46747 * 180.02562 * 27 26 25 49 49 H 1.08994 * 109.46794 * 60.00324 * 27 26 25 50 50 H 1.08994 * 109.47776 * 299.99820 * 28 27 26 51 51 H 1.09001 * 109.46922 * 179.97438 * 28 27 26 52 52 H 1.08999 * 109.47325 * 300.00443 * 29 24 23 53 53 H 1.09007 * 109.46991 * 60.00220 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6249 -2.5563 0.8919 11 8 0.4292 -2.5756 -1.1648 12 6 2.2455 -3.6620 0.0015 13 7 1.5119 -4.9334 0.0603 14 6 0.7960 -5.0733 1.3469 15 6 0.8154 -6.5686 1.7144 16 6 1.6091 -7.2534 0.5781 17 6 2.4426 -6.0887 -0.0130 18 1 3.3310 -5.9059 0.5915 19 6 2.8264 -6.3818 -1.4648 20 8 1.6316 -6.6986 -2.2267 21 6 1.7968 -6.9836 -3.5321 22 8 2.9090 -6.9676 -4.0215 23 7 0.7287 -7.2867 -4.2962 24 6 0.9085 -7.5963 -5.7168 25 6 0.9320 -6.2963 -6.5232 26 6 1.1191 -6.6197 -8.0068 27 6 -0.0386 -7.4972 -8.4874 28 6 -0.0619 -8.7972 -7.6811 29 6 -0.2487 -8.4740 -6.1978 30 1 -0.4851 0.8400 0.0004 31 1 0.9210 -2.5308 -1.9961 32 1 2.9006 -3.5800 0.8688 33 1 2.8430 -3.6290 -0.9095 34 1 -0.2331 -4.7309 1.2384 35 1 1.3033 -4.4946 2.1189 36 1 1.3186 -6.7169 2.6698 37 1 -0.2007 -6.9607 1.7577 38 1 2.2610 -8.0306 0.9770 39 1 0.9329 -7.6632 -0.1721 40 1 3.3109 -5.5060 -1.8964 41 1 3.5120 -7.2285 -1.4955 42 1 -0.1590 -7.2998 -3.9055 43 1 1.8499 -8.1276 -5.8566 44 1 -0.0094 -5.7650 -6.3833 45 1 1.7564 -5.6710 -6.1804 46 1 2.0603 -7.1512 -8.1469 47 1 1.1363 -5.6935 -8.5812 48 1 0.0951 -7.7279 -9.5444 49 1 -0.9798 -6.9657 -8.3474 50 1 0.8793 -9.3287 -7.8212 51 1 -0.8869 -9.4221 -8.0232 52 1 -0.2655 -9.4002 -5.6233 53 1 -1.1902 -7.9427 -6.0580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930476451.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = -173.534403 kcal Electronic energy + Delta-G solvation = -31086.636058 eV Core-core repulsion = 26956.148783 eV Total energy + Delta-G solvation = -4130.487275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.59942 -40.27946 -39.39309 -37.59650 -37.04996 -35.30278 -34.24936 -33.06932 -31.85320 -31.69195 -30.17347 -29.47128 -26.63583 -26.05103 -23.93971 -23.52999 -23.11029 -22.07932 -21.30169 -21.10987 -20.87754 -19.54095 -19.05238 -17.87466 -17.41975 -17.01886 -16.72596 -16.63834 -16.40285 -16.09069 -15.60939 -15.52037 -15.31851 -15.06422 -14.92903 -14.52813 -14.49369 -14.20632 -13.80560 -13.76379 -13.46059 -13.36674 -13.22381 -13.12114 -13.00544 -12.79508 -12.59630 -12.29370 -12.16637 -12.09931 -12.06239 -12.00263 -11.89774 -11.77543 -11.53998 -11.41277 -11.35920 -11.33890 -11.16451 -11.01856 -10.71280 -10.14505 -10.09871 -9.21221 -8.14818 -6.41285 1.22438 1.37972 1.39944 1.48012 1.80300 2.36345 3.01322 3.11184 3.20237 3.63130 3.70047 3.75512 3.81286 4.03453 4.05709 4.21176 4.21857 4.26221 4.29536 4.30925 4.34103 4.37229 4.42405 4.46442 4.55465 4.57329 4.60295 4.69681 4.74099 4.88550 4.90443 4.98295 5.00528 5.03521 5.07554 5.13249 5.21426 5.23010 5.23679 5.32456 5.38033 5.39162 5.40030 5.54923 5.56615 5.56957 5.74219 5.98452 6.12386 6.20549 6.42252 6.71763 7.32195 7.36095 7.56479 8.89348 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.002938 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.224302 B = 9528.329189 C =11473.949468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.591 4.591 8 H 0.057 0.943 9 C 0.241 3.759 10 H 0.021 0.979 11 O -0.568 6.568 12 C 0.040 3.960 13 N -0.508 5.508 14 C 0.038 3.962 15 C -0.119 4.119 16 C -0.105 4.105 17 C 0.055 3.945 18 H 0.084 0.916 19 C 0.110 3.890 20 O -0.350 6.350 21 C 0.641 3.359 22 O -0.613 6.613 23 N -0.695 5.695 24 C 0.164 3.836 25 C -0.133 4.133 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.112 4.112 29 C -0.119 4.119 30 H 0.261 0.739 31 H 0.348 0.652 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.416 0.584 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.086 0.914 52 H 0.079 0.921 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -21.630 -10.059 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.630 4.630 8 H 0.075 0.925 9 C 0.183 3.817 10 H 0.039 0.961 11 O -0.371 6.371 12 C -0.088 4.088 13 N -0.232 5.232 14 C -0.090 4.090 15 C -0.157 4.157 16 C -0.142 4.142 17 C -0.053 4.053 18 H 0.101 0.899 19 C 0.035 3.965 20 O -0.262 6.262 21 C 0.395 3.605 22 O -0.505 6.505 23 N -0.354 5.354 24 C 0.061 3.939 25 C -0.171 4.171 26 C -0.152 4.152 27 C -0.157 4.157 28 C -0.150 4.150 29 C -0.157 4.157 30 H 0.070 0.930 31 H 0.191 0.809 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.252 0.748 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.104 0.896 52 H 0.098 0.902 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.154 -21.540 -10.175 23.823 hybrid contribution 1.255 1.783 0.652 2.276 sum 1.101 -19.758 -9.523 21.961 Atomic orbital electron populations 1.70217 1.07617 1.27405 1.48217 1.25890 0.95502 1.02855 0.93341 0.85626 0.78404 0.78540 0.79082 1.19392 1.20823 1.19211 1.22030 0.93438 0.92956 1.54545 0.92511 1.19123 0.87678 0.89911 0.84980 0.96122 1.86504 1.38574 1.96457 1.15532 1.22854 0.96025 0.90567 0.99393 1.64671 1.24426 1.00979 1.33146 1.22771 0.98722 0.97817 0.89667 1.22361 1.01864 0.92430 0.98999 1.22432 0.98438 0.95965 0.97408 1.23065 0.96429 0.92710 0.93133 0.89864 1.22824 0.83859 1.00352 0.89478 1.86338 1.38893 1.81296 1.19710 1.18491 0.84732 0.76105 0.81190 1.90937 1.25344 1.59568 1.74680 1.44823 1.08330 1.72501 1.09760 1.21088 1.00677 0.95859 0.76306 1.21952 1.01558 0.97178 0.96455 1.21486 0.99507 1.00483 0.93749 1.21583 0.98186 0.95869 1.00075 1.21483 1.03059 0.97601 0.92882 1.21801 0.96942 0.99444 0.97554 0.92968 0.80874 0.95205 0.92249 0.92853 0.94957 0.89835 0.90169 0.88430 0.90540 0.93301 0.89342 0.74757 0.90819 0.91395 0.94485 0.92008 0.91516 0.90576 0.91502 0.91630 0.89593 0.90196 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.87 12.84 21.45 0.28 -54.60 16 2 C 0.03 1.53 5.40 84.65 0.46 1.99 16 3 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.59 -33.45 8.76 25.60 0.22 -33.22 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.24 12.79 2.79 29.85 0.08 12.87 16 10 H 0.02 1.23 7.29 -2.39 -0.02 1.22 16 11 O -0.57 -31.42 12.64 -148.98 -1.88 -33.31 16 12 C 0.04 1.71 4.26 86.30 0.37 2.08 16 13 N -0.51 -18.63 4.81 -858.24 -4.13 -22.76 16 14 C 0.04 1.31 5.55 86.44 0.48 1.79 16 15 C -0.12 -2.82 6.93 31.47 0.22 -2.61 16 16 C -0.10 -2.35 6.45 31.80 0.20 -2.15 16 17 C 0.05 1.54 2.73 45.26 0.12 1.67 16 18 H 0.08 2.15 8.02 -2.39 -0.02 2.13 16 19 C 0.11 3.23 5.32 71.98 0.38 3.61 16 20 O -0.35 -10.89 9.11 -55.43 -0.51 -11.40 16 21 C 0.64 19.83 8.71 129.79 1.13 20.96 16 22 O -0.61 -22.40 15.80 19.79 0.31 -22.09 16 23 N -0.70 -16.22 5.08 -570.11 -2.90 -19.11 16 24 C 0.16 3.24 2.45 44.99 0.11 3.35 16 25 C -0.13 -2.83 5.49 30.59 0.17 -2.66 16 26 C -0.11 -1.86 5.92 30.59 0.18 -1.68 16 27 C -0.12 -1.40 5.92 30.60 0.18 -1.22 16 28 C -0.11 -1.17 5.92 30.58 0.18 -0.98 16 29 C -0.12 -1.51 5.39 30.58 0.16 -1.34 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 31 H 0.35 17.77 9.04 -74.06 -0.67 17.10 16 32 H 0.03 1.24 7.94 -2.38 -0.02 1.22 16 33 H 0.06 2.53 7.29 -2.39 -0.02 2.51 16 34 H 0.05 2.08 8.13 -2.39 -0.02 2.06 16 35 H 0.03 1.15 7.64 -2.39 -0.02 1.13 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.83 7.16 -2.39 -0.02 1.81 16 40 H 0.05 1.63 7.34 -2.39 -0.02 1.62 16 41 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.42 8.07 8.71 -92.71 -0.81 7.26 16 43 H 0.07 1.70 7.58 -2.38 -0.02 1.69 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -73.03 415.31 -2.73 -75.76 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.58 Total: 38.76 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.66 Total: 2.46 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -6.75 Total: -96.47 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: -2.08 Total: -66.79 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -73.03 -2.73 -75.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930476451.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.777 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds