Wall clock time and date at job start Sat Apr 11 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00162 * 2 1 4 4 H 1.48501 * 109.47372 * 240.00119 * 3 2 1 5 5 H 1.48499 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47041 * 120.00186 * 3 2 1 7 7 C 1.37881 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99857 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47141 * 300.00383 * 9 7 2 11 11 O 1.42900 * 109.46803 * 60.00410 * 9 7 2 12 12 C 1.52996 * 109.46954 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.46985 * 173.83890 * 12 9 7 14 14 C 1.46850 * 111.00369 * 307.60100 * 13 12 9 15 15 C 1.53036 * 109.52713 * 185.83624 * 14 13 12 16 16 C 1.53115 * 109.27728 * 300.82290 * 15 14 13 17 17 C 1.53121 * 109.16202 * 57.65478 * 16 15 14 18 18 C 1.46849 * 110.99949 * 71.81035 * 13 12 9 19 19 H 1.09000 * 109.45299 * 294.17267 * 18 13 12 20 20 C 1.53000 * 109.46063 * 54.14433 * 18 13 12 21 21 O 1.45203 * 109.47009 * 63.14707 * 20 18 13 22 22 C 1.34635 * 116.99457 * 179.97438 * 21 20 18 23 23 O 1.21508 * 120.00797 * 359.97438 * 22 21 20 24 24 N 1.34780 * 119.99807 * 179.97438 * 22 21 20 25 25 C 1.46500 * 120.00130 * 179.97438 * 24 22 21 26 26 C 1.54257 * 110.03552 * 272.90765 * 25 24 22 27 27 C 1.54967 * 104.16111 * 217.13620 * 26 25 24 28 28 C 1.54885 * 102.77641 * 37.89387 * 27 26 25 29 29 C 1.53882 * 110.02819 * 155.69303 * 25 24 22 30 30 H 0.96998 * 120.00339 * 0.02562 * 1 2 3 31 31 H 0.96693 * 114.00248 * 59.99803 * 11 9 7 32 32 H 1.09000 * 109.47229 * 53.84366 * 12 9 7 33 33 H 1.08998 * 109.47537 * 293.83989 * 12 9 7 34 34 H 1.08998 * 109.45972 * 65.81708 * 14 13 12 35 35 H 1.08997 * 109.45022 * 305.85034 * 14 13 12 36 36 H 1.08996 * 109.50240 * 180.87770 * 15 14 13 37 37 H 1.09001 * 109.52972 * 60.78247 * 15 14 13 38 38 H 1.08997 * 109.52384 * 297.74660 * 16 15 14 39 39 H 1.08996 * 109.51986 * 177.55624 * 16 15 14 40 40 H 1.09001 * 109.49744 * 182.40332 * 17 16 15 41 41 H 1.09003 * 109.53756 * 62.30435 * 17 16 15 42 42 H 1.08997 * 109.46987 * 303.14438 * 20 18 13 43 43 H 1.09007 * 109.46721 * 183.14666 * 20 18 13 44 44 H 0.96999 * 119.99794 * 0.27923 * 24 22 21 45 45 H 1.08997 * 110.01351 * 34.30335 * 25 24 22 46 46 H 1.08994 * 110.49045 * 335.78810 * 26 25 24 47 47 H 1.08999 * 110.48514 * 98.43109 * 26 25 24 48 48 H 1.09002 * 110.72017 * 279.57411 * 27 26 25 49 49 H 1.09003 * 110.92060 * 156.29605 * 27 26 25 50 50 H 1.08997 * 110.48633 * 203.40879 * 28 27 26 51 51 H 1.08993 * 110.49156 * 80.76150 * 28 27 26 52 52 H 1.09005 * 110.02972 * 238.57118 * 29 25 24 53 53 H 1.08995 * 110.03189 * 359.95000 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4290 -2.5746 -1.1671 12 6 2.2452 -3.6621 -0.0018 13 7 1.5169 -4.9291 0.1468 14 6 0.6222 -4.8886 1.3106 15 6 -0.0080 -6.2674 1.5196 16 6 -0.7909 -6.6610 0.2640 17 6 0.1533 -6.6487 -0.9414 18 6 0.7787 -5.2588 -1.0791 19 1 -0.0074 -4.5209 -1.2390 20 6 1.7385 -5.2474 -2.2706 21 8 2.7433 -6.2804 -2.0926 22 6 3.6706 -6.4043 -3.0609 23 8 3.6408 -5.6698 -4.0284 24 7 4.6320 -7.3432 -2.9570 25 6 5.6406 -7.4784 -4.0108 26 6 5.1238 -8.4182 -5.1195 27 6 6.3801 -9.2113 -5.5603 28 6 7.1273 -9.4402 -4.2231 29 6 6.9142 -8.1276 -3.4411 30 1 -0.4850 0.8400 -0.0004 31 1 0.9209 -2.5291 -1.9983 32 1 2.9428 -3.5446 0.8274 33 1 2.7963 -3.6680 -0.9422 34 1 -0.1632 -4.1524 1.1393 35 1 1.1924 -4.6116 2.1973 36 1 -0.6839 -6.2328 2.3740 37 1 0.7757 -7.0019 1.7051 38 1 -1.5995 -5.9486 0.1006 39 1 -1.2054 -7.6609 0.3918 40 1 -0.4076 -6.8866 -1.8453 41 1 0.9400 -7.3890 -0.7958 42 1 2.2252 -4.2743 -2.3358 43 1 1.1810 -5.4370 -3.1880 44 1 4.6534 -7.9322 -2.1866 45 1 5.8757 -6.5002 -4.4300 46 1 4.3656 -9.0940 -4.7241 47 1 4.7243 -7.8410 -5.9533 48 1 6.9877 -8.6211 -6.2463 49 1 6.1007 -10.1621 -6.0143 50 1 8.1890 -9.6087 -4.4033 51 1 6.6930 -10.2811 -3.6824 52 1 7.7675 -7.4647 -3.5847 53 1 6.7820 -8.3412 -2.3805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930510769.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:39 Heat of formation + Delta-G solvation = -163.972588 kcal Electronic energy + Delta-G solvation = -31672.598266 eV Core-core repulsion = 27542.525623 eV Total energy + Delta-G solvation = -4130.072644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65513 -40.57769 -39.17628 -37.48831 -37.09381 -34.81875 -34.38184 -34.07509 -32.79706 -29.96444 -29.64795 -28.80310 -27.53871 -26.67106 -24.55374 -23.23866 -22.54645 -21.98113 -21.54293 -21.34830 -20.24745 -19.56885 -19.12020 -17.91027 -17.66392 -16.78447 -16.70912 -16.57356 -16.34951 -16.28849 -16.00068 -15.44304 -15.29943 -15.23062 -14.99968 -14.51410 -14.27780 -14.18489 -13.98046 -13.74269 -13.64393 -13.13100 -13.02035 -12.89014 -12.79551 -12.69218 -12.50618 -12.31419 -12.23471 -12.01088 -11.95954 -11.92760 -11.83247 -11.72058 -11.59574 -11.51037 -11.43752 -11.36490 -11.19311 -10.96542 -10.71342 -10.51220 -10.17783 -8.82029 -8.13665 -6.41875 1.22204 1.36797 1.37838 1.45838 1.78568 2.35513 3.03088 3.09468 3.24594 3.60366 3.70283 3.80790 3.83080 4.00945 4.03655 4.09746 4.16470 4.32985 4.36855 4.43497 4.49893 4.54182 4.54469 4.55830 4.60643 4.61835 4.69515 4.79429 4.85862 4.89618 4.91392 5.03607 5.04841 5.09415 5.10816 5.14735 5.15982 5.24461 5.29339 5.31390 5.31597 5.45175 5.48051 5.54488 5.57709 5.60654 5.68964 5.96298 6.24276 6.32358 6.42316 6.69627 7.26350 7.35776 7.43960 8.86429 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010936 B = 0.003062 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.672625 B = 9140.701101 C =10880.399370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.029 3.971 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.589 4.589 8 H 0.054 0.946 9 C 0.203 3.797 10 H 0.033 0.967 11 O -0.570 6.570 12 C 0.037 3.963 13 N -0.516 5.516 14 C 0.051 3.949 15 C -0.106 4.106 16 C -0.117 4.117 17 C -0.102 4.102 18 C 0.077 3.923 19 H 0.076 0.924 20 C 0.102 3.898 21 O -0.348 6.348 22 C 0.636 3.364 23 O -0.614 6.614 24 N -0.689 5.689 25 C 0.151 3.849 26 C -0.136 4.136 27 C -0.120 4.120 28 C -0.118 4.118 29 C -0.126 4.126 30 H 0.261 0.739 31 H 0.349 0.651 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.014 0.986 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.417 0.583 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.076 0.924 52 H 0.082 0.918 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.616 -22.698 -5.056 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.173 4.173 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.627 4.627 8 H 0.073 0.927 9 C 0.144 3.856 10 H 0.051 0.949 11 O -0.374 6.374 12 C -0.091 4.091 13 N -0.239 5.239 14 C -0.077 4.077 15 C -0.143 4.143 16 C -0.154 4.154 17 C -0.140 4.140 18 C -0.031 4.031 19 H 0.094 0.906 20 C 0.027 3.973 21 O -0.260 6.260 22 C 0.390 3.610 23 O -0.506 6.506 24 N -0.350 5.350 25 C 0.048 3.952 26 C -0.175 4.175 27 C -0.158 4.158 28 C -0.155 4.155 29 C -0.164 4.164 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.255 0.745 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.098 0.902 50 H 0.101 0.899 51 H 0.095 0.905 52 H 0.101 0.899 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.244 -22.627 -4.929 24.935 hybrid contribution -0.007 2.308 -0.264 2.323 sum 9.237 -20.320 -5.192 22.917 Atomic orbital electron populations 1.70180 1.07454 1.27327 1.48374 1.25835 0.95465 1.02660 0.93383 0.85699 0.78485 0.78910 0.79011 1.19580 1.20913 1.19311 1.22015 0.93400 0.93054 1.54230 0.92732 1.19900 0.88680 0.91874 0.85099 0.94940 1.86486 1.39253 1.95860 1.15773 1.22791 0.96741 0.88329 1.01267 1.62385 1.27634 1.30734 1.03159 1.22098 0.94646 0.97689 0.93226 1.21537 0.99417 0.95268 0.98108 1.21558 0.97410 1.01981 0.94488 1.21540 0.98669 0.95088 0.98703 1.22005 0.93858 0.98950 0.88286 0.90619 1.23108 0.87041 0.88450 0.98660 1.86324 1.38805 1.55387 1.45502 1.18616 0.80428 0.81019 0.80965 1.90960 1.77166 1.47876 1.34600 1.44901 1.27836 1.35475 1.26743 1.21810 0.86923 0.99705 0.86810 1.22812 0.99140 0.97998 0.97581 1.22486 0.95217 1.00239 0.97810 1.22354 1.01403 0.96522 0.95240 1.22446 0.95182 0.97796 1.01021 0.93038 0.80631 0.91567 0.91887 0.96762 0.91668 0.90609 0.90577 0.93402 0.89559 0.90950 0.90572 0.92691 0.90777 0.74503 0.91307 0.91010 0.92798 0.91034 0.90162 0.89896 0.90516 0.89931 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.76 12.84 21.45 0.28 -53.49 16 2 C 0.03 1.66 5.40 84.66 0.46 2.12 16 3 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.59 -32.73 8.76 25.60 0.22 -32.51 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.20 10.24 2.42 29.85 0.07 10.32 16 10 H 0.03 1.84 6.08 -2.39 -0.01 1.83 16 11 O -0.57 -28.76 9.70 -148.98 -1.44 -30.20 16 12 C 0.04 1.55 4.91 86.30 0.42 1.98 16 13 N -0.52 -18.47 4.62 -871.12 -4.03 -22.49 16 14 C 0.05 1.79 4.65 86.32 0.40 2.19 16 15 C -0.11 -2.76 6.09 30.64 0.19 -2.57 16 16 C -0.12 -2.88 6.00 30.67 0.18 -2.70 16 17 C -0.10 -2.71 5.21 30.65 0.16 -2.55 16 18 C 0.08 2.58 1.63 44.94 0.07 2.65 16 19 H 0.08 2.97 5.68 -2.39 -0.01 2.96 16 20 C 0.10 3.43 4.54 71.98 0.33 3.75 16 21 O -0.35 -10.85 9.38 -55.45 -0.52 -11.37 16 22 C 0.64 19.69 8.74 129.79 1.13 20.82 16 23 O -0.61 -23.41 15.80 19.82 0.31 -23.10 16 24 N -0.69 -15.02 5.04 -566.67 -2.86 -17.88 16 25 C 0.15 2.84 3.23 45.72 0.15 2.99 16 26 C -0.14 -2.32 6.54 31.69 0.21 -2.11 16 27 C -0.12 -1.34 6.91 31.91 0.22 -1.12 16 28 C -0.12 -1.05 6.83 31.67 0.22 -0.84 16 29 C -0.13 -1.51 6.57 31.32 0.21 -1.31 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.35 16.40 8.22 -74.06 -0.61 15.79 16 32 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.06 2.68 5.50 -2.39 -0.01 2.67 16 34 H 0.01 0.59 6.44 -2.39 -0.02 0.57 16 35 H 0.06 2.26 8.12 -2.39 -0.02 2.24 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 1.98 7.57 -2.39 -0.02 1.96 16 42 H 0.05 2.10 5.18 -2.39 -0.01 2.09 16 43 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 44 H 0.42 6.92 8.42 -92.71 -0.78 6.13 16 45 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 46 H 0.07 1.21 8.05 -2.39 -0.02 1.19 16 47 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 53 H 0.08 0.87 7.61 -2.39 -0.02 0.85 16 Total: -1.00 -69.23 403.03 -2.07 -71.30 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: -0.48 Total: 39.91 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 4.64 Total: 1.11 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -6.61 Total: -93.86 kcal Atomic # 8 Polarization: -63.02 SS G_CDS: -1.65 Total: -64.67 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.23 -2.07 -71.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930510769.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.677 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds