Wall clock time and date at job start Sat Apr 11 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99737 * 2 1 4 4 H 1.48497 * 109.47260 * 269.99779 * 3 2 1 5 5 H 1.48494 * 109.47283 * 30.00644 * 3 2 1 6 6 H 1.48502 * 109.46724 * 150.00259 * 3 2 1 7 7 C 1.37874 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99555 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00229 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47052 * 299.99953 * 9 7 2 11 11 O 1.42897 * 109.46991 * 60.00001 * 9 7 2 12 12 C 1.53002 * 109.47232 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47095 * 180.02562 * 12 9 7 14 14 C 1.46848 * 110.99902 * 295.09256 * 13 12 9 15 15 C 1.53031 * 109.52557 * 174.16121 * 14 13 12 16 16 C 1.53123 * 109.27794 * 59.18096 * 15 14 13 17 17 C 1.53116 * 109.15942 * 302.34841 * 16 15 14 18 18 C 1.46846 * 110.99893 * 170.88811 * 13 12 9 19 19 H 1.09001 * 109.46766 * 65.83321 * 18 13 12 20 20 C 1.52998 * 109.46225 * 305.85021 * 18 13 12 21 21 O 1.45203 * 109.47309 * 296.68173 * 20 18 13 22 22 C 1.34631 * 117.00042 * 179.97438 * 21 20 18 23 23 O 1.21506 * 120.00125 * 359.97438 * 22 21 20 24 24 N 1.34779 * 119.99966 * 180.02562 * 22 21 20 25 25 C 1.46504 * 120.00108 * 180.02562 * 24 22 21 26 26 C 1.54268 * 110.03128 * 272.16233 * 25 24 22 27 27 C 1.54886 * 104.19619 * 217.10376 * 26 25 24 28 28 C 1.54891 * 102.74560 * 37.94480 * 27 26 25 29 29 C 1.53874 * 110.03272 * 154.99948 * 25 24 22 30 30 H 0.97004 * 119.99843 * 359.97438 * 1 2 3 31 31 H 0.96699 * 114.00210 * 59.99884 * 11 9 7 32 32 H 1.09005 * 109.47087 * 59.99621 * 12 9 7 33 33 H 1.09001 * 109.47025 * 299.99923 * 12 9 7 34 34 H 1.09005 * 109.46254 * 54.14553 * 14 13 12 35 35 H 1.09008 * 109.46588 * 294.18320 * 14 13 12 36 36 H 1.08996 * 109.50585 * 299.24066 * 15 14 13 37 37 H 1.09002 * 109.50670 * 179.12289 * 15 14 13 38 38 H 1.08999 * 109.52132 * 62.25396 * 16 15 14 39 39 H 1.09000 * 109.52304 * 182.44084 * 16 15 14 40 40 H 1.09001 * 109.50619 * 177.59501 * 17 16 15 41 41 H 1.09003 * 109.50443 * 297.71077 * 17 16 15 42 42 H 1.08998 * 109.47284 * 56.68012 * 20 18 13 43 43 H 1.08998 * 109.47125 * 176.68033 * 20 18 13 44 44 H 0.96999 * 119.99776 * 359.97438 * 24 22 21 45 45 H 1.09000 * 110.01364 * 33.60967 * 25 24 22 46 46 H 1.09000 * 110.48662 * 335.78803 * 26 25 24 47 47 H 1.09002 * 110.47985 * 98.42565 * 26 25 24 48 48 H 1.08997 * 110.75780 * 279.63309 * 27 26 25 49 49 H 1.08997 * 110.91021 * 156.33133 * 27 26 25 50 50 H 1.09001 * 110.48224 * 203.37366 * 28 27 26 51 51 H 1.09002 * 110.48307 * 80.73711 * 28 27 26 52 52 H 1.08996 * 110.03355 * 238.57125 * 29 25 24 53 53 H 1.09004 * 110.03279 * 359.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8880 11 8 0.4300 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 7 1.5108 -4.9342 -0.0032 14 6 0.7428 -5.1002 1.2374 15 6 -0.1201 -6.3602 1.1401 16 6 0.7833 -7.5751 0.9107 17 6 1.6074 -7.3556 -0.3610 18 6 2.4202 -6.0666 -0.2201 19 1 3.0981 -6.1559 0.6288 20 6 3.2302 -5.8326 -1.4969 21 8 2.3335 -5.7916 -2.6382 22 6 2.8915 -5.5912 -3.8470 23 8 4.0947 -5.4539 -3.9455 24 7 2.1153 -5.5419 -4.9477 25 6 2.7225 -5.3244 -6.2631 26 6 2.8431 -3.8127 -6.5460 27 6 2.5449 -3.6847 -8.0605 28 6 1.4214 -4.7287 -8.2770 29 6 1.8185 -5.9068 -7.3638 30 1 -0.4850 0.8401 0.0004 31 1 0.9224 -2.5281 -1.9998 32 1 2.8713 -3.6047 0.8891 33 1 2.8726 -3.6039 -0.8909 34 1 0.1015 -4.2315 1.3865 35 1 1.4287 -5.1938 2.0795 36 1 -0.8157 -6.2615 0.3067 37 1 -0.6783 -6.4916 2.0671 38 1 1.4528 -7.6971 1.7621 39 1 0.1699 -8.4690 0.7975 40 1 2.2835 -8.1981 -0.5065 41 1 0.9390 -7.2725 -1.2180 42 1 3.7640 -4.8854 -1.4201 43 1 3.9465 -6.6439 -1.6265 44 1 1.1547 -5.6512 -4.8690 45 1 3.7063 -5.7921 -6.3018 46 1 2.1086 -3.2559 -5.9641 47 1 3.8514 -3.4626 -6.3248 48 1 3.4259 -3.9374 -8.6504 49 1 2.1930 -2.6823 -8.3043 50 1 1.3920 -5.0469 -9.3191 51 1 0.4573 -4.3198 -7.9747 52 1 2.3639 -6.6563 -7.9371 53 1 0.9282 -6.3516 -6.9192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930510770.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:42 Heat of formation + Delta-G solvation = -165.706294 kcal Electronic energy + Delta-G solvation = -31797.674369 eV Core-core repulsion = 27667.526546 eV Total energy + Delta-G solvation = -4130.147823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62031 -40.37554 -39.15352 -37.56704 -37.09724 -34.81083 -34.35779 -34.11164 -32.81449 -30.00062 -29.64781 -28.81180 -27.57397 -26.69666 -24.62655 -23.21667 -22.33225 -21.82609 -21.55207 -21.33037 -20.51305 -19.59380 -19.07764 -17.94143 -17.60325 -16.76644 -16.68951 -16.52579 -16.44908 -16.22444 -15.93432 -15.62064 -15.17568 -15.00927 -14.86945 -14.64865 -14.30923 -14.26613 -14.11245 -13.86236 -13.60582 -13.16326 -13.06593 -12.86693 -12.79480 -12.72213 -12.53677 -12.45466 -12.13631 -12.05619 -12.01743 -11.94738 -11.88855 -11.73642 -11.62316 -11.47740 -11.43902 -11.38016 -11.01740 -10.88150 -10.67385 -10.16448 -10.07971 -9.06051 -8.14914 -6.40615 1.23110 1.37029 1.37394 1.48136 1.79947 2.35843 2.93898 3.11086 3.23205 3.60281 3.69866 3.72144 3.79358 4.00016 4.00968 4.13351 4.24750 4.28146 4.31940 4.36332 4.43922 4.48846 4.51337 4.53125 4.55216 4.61246 4.62150 4.68865 4.78657 4.90140 4.91976 4.94471 5.01117 5.04286 5.07442 5.10599 5.14147 5.24041 5.29095 5.29627 5.33398 5.44665 5.47813 5.55427 5.58428 5.58841 5.75965 6.02510 6.22581 6.34901 6.42223 6.72205 7.32711 7.35972 7.57687 8.89301 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007143 B = 0.004265 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3919.218149 B = 6563.409598 C = 9457.717304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.031 3.969 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.592 4.592 8 H 0.052 0.948 9 C 0.243 3.757 10 H 0.024 0.976 11 O -0.563 6.563 12 C 0.044 3.956 13 N -0.521 5.521 14 C 0.056 3.944 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.102 4.102 18 C 0.083 3.917 19 H 0.067 0.933 20 C 0.095 3.905 21 O -0.347 6.347 22 C 0.640 3.360 23 O -0.614 6.614 24 N -0.691 5.691 25 C 0.155 3.845 26 C -0.143 4.143 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.123 4.123 30 H 0.262 0.738 31 H 0.345 0.655 32 H 0.021 0.979 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.030 0.970 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.416 0.584 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.087 0.913 51 H 0.068 0.932 52 H 0.092 0.908 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 -17.336 -11.023 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.172 4.172 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.630 4.630 8 H 0.070 0.930 9 C 0.185 3.815 10 H 0.041 0.959 11 O -0.365 6.365 12 C -0.084 4.084 13 N -0.247 5.247 14 C -0.072 4.072 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.139 4.139 18 C -0.025 4.025 19 H 0.084 0.916 20 C 0.020 3.980 21 O -0.260 6.260 22 C 0.393 3.607 23 O -0.506 6.506 24 N -0.351 5.351 25 C 0.052 3.948 26 C -0.182 4.182 27 C -0.157 4.157 28 C -0.157 4.157 29 C -0.161 4.161 30 H 0.070 0.930 31 H 0.189 0.811 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.253 0.747 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.106 0.894 51 H 0.087 0.913 52 H 0.110 0.890 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.162 -17.239 -10.895 20.508 hybrid contribution 1.268 1.587 0.744 2.163 sum 3.430 -15.652 -10.151 18.968 Atomic orbital electron populations 1.70213 1.07480 1.27293 1.48275 1.25814 0.95452 1.02581 0.93324 0.85637 0.78804 0.79194 0.78427 1.19966 1.20453 1.19140 1.22051 0.93288 0.93155 1.54495 0.92968 1.19107 0.87660 0.89630 0.85095 0.95867 1.86499 1.38237 1.96435 1.15318 1.22751 0.96210 0.90444 0.99000 1.61867 1.25949 1.00638 1.36202 1.22086 0.96511 0.99065 0.89544 1.21538 0.97767 0.93317 1.02064 1.21553 0.98287 0.97698 0.97391 1.21533 0.98929 0.94397 0.99087 1.21902 0.93962 0.92899 0.93741 0.91592 1.23161 0.90987 1.01926 0.81957 1.86361 1.40805 1.84619 1.14201 1.18536 0.84195 0.75894 0.82057 1.90934 1.15103 1.57588 1.86993 1.44942 1.10859 1.75384 1.03894 1.21795 0.97716 0.95763 0.79547 1.22843 1.01231 0.95868 0.98292 1.22466 0.99495 1.00088 0.93690 1.22366 0.98351 0.94708 1.00320 1.22431 0.99578 0.98789 0.95255 0.92951 0.81122 0.96068 0.92027 0.93213 0.95225 0.92396 0.90391 0.91475 0.89819 0.89686 0.91499 0.92869 0.89579 0.74703 0.90230 0.92243 0.92910 0.90348 0.91030 0.89422 0.91329 0.88962 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.47 12.84 21.45 0.28 -54.19 16 2 C 0.03 1.78 5.40 84.65 0.46 2.24 16 3 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.59 -33.71 8.76 25.60 0.22 -33.49 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.24 12.85 2.68 29.85 0.08 12.93 16 10 H 0.02 1.38 6.40 -2.39 -0.02 1.36 16 11 O -0.56 -30.69 12.60 -148.98 -1.88 -32.57 16 12 C 0.04 1.89 4.27 86.30 0.37 2.26 16 13 N -0.52 -18.88 4.30 -871.11 -3.74 -22.62 16 14 C 0.06 1.91 5.29 86.32 0.46 2.37 16 15 C -0.11 -2.89 6.09 30.65 0.19 -2.71 16 16 C -0.11 -2.32 6.00 30.67 0.18 -2.13 16 17 C -0.10 -2.34 5.21 30.65 0.16 -2.18 16 18 C 0.08 2.38 2.23 44.94 0.10 2.48 16 19 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 20 C 0.09 2.87 4.68 71.98 0.34 3.21 16 21 O -0.35 -11.12 9.38 -55.40 -0.52 -11.64 16 22 C 0.64 20.48 8.75 129.79 1.14 21.61 16 23 O -0.61 -23.18 15.79 19.82 0.31 -22.87 16 24 N -0.69 -16.86 5.04 -566.66 -2.86 -19.72 16 25 C 0.15 3.24 3.25 45.72 0.15 3.39 16 26 C -0.14 -3.25 6.53 31.67 0.21 -3.04 16 27 C -0.12 -1.90 6.91 31.88 0.22 -1.68 16 28 C -0.12 -1.51 6.83 31.67 0.22 -1.29 16 29 C -0.12 -1.63 6.57 31.32 0.21 -1.43 16 30 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.35 17.62 9.04 -74.06 -0.67 16.95 16 32 H 0.02 0.91 8.13 -2.38 -0.02 0.89 16 33 H 0.06 2.70 5.63 -2.39 -0.01 2.69 16 34 H 0.05 2.06 6.18 -2.38 -0.01 2.05 16 35 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.74 7.57 -2.39 -0.02 1.72 16 42 H 0.05 1.86 5.93 -2.39 -0.01 1.85 16 43 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.42 8.57 8.43 -92.71 -0.78 7.78 16 45 H 0.08 1.88 7.57 -2.39 -0.02 1.86 16 46 H 0.06 1.54 8.05 -2.39 -0.02 1.52 16 47 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.08 0.99 7.62 -2.39 -0.02 0.97 16 Total: -1.00 -71.89 410.81 -2.24 -74.13 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: -0.55 Total: 40.40 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.69 Total: 2.53 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -6.32 Total: -96.53 kcal Atomic # 8 Polarization: -65.00 SS G_CDS: -2.08 Total: -67.08 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -71.89 -2.24 -74.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930510770.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.579 kcal (2) G-P(sol) polarization free energy of solvation -71.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds