Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47192 * 2 1 4 4 C 1.50705 * 109.46900 * 240.00659 * 2 1 3 5 5 H 1.07997 * 119.99337 * 239.99842 * 4 2 1 6 6 C 1.37872 * 120.00148 * 59.99789 * 4 2 1 7 7 N 1.31514 * 120.00337 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99821 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47117 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47008 * 120.00002 * 8 6 4 11 11 H 1.48503 * 109.47379 * 240.00076 * 8 6 4 12 12 C 1.52997 * 109.47135 * 120.00239 * 2 1 3 13 13 N 1.46496 * 109.47190 * 299.99806 * 12 2 1 14 14 C 1.34779 * 119.99901 * 179.97438 * 13 12 2 15 15 O 1.21346 * 119.99901 * 0.02562 * 14 13 12 16 16 C 1.49452 * 120.00082 * 179.97438 * 14 13 12 17 17 O 1.21356 * 119.99407 * 0.02562 * 16 14 13 18 18 N 1.34772 * 120.00277 * 180.02562 * 16 14 13 19 19 C 1.46496 * 120.00096 * 180.02562 * 18 16 14 20 20 C 1.53005 * 109.47070 * 179.97438 * 19 18 16 21 21 H 1.09000 * 109.48841 * 59.97453 * 20 19 18 22 22 C 1.53091 * 109.47963 * 180.02562 * 20 19 18 23 23 C 1.53177 * 109.16264 * 177.59491 * 22 20 19 24 24 C 1.53179 * 109.10692 * 302.97408 * 23 22 20 25 25 C 1.53280 * 109.06328 * 56.94222 * 24 23 22 26 26 C 1.53002 * 109.45473 * 182.44699 * 25 24 23 27 27 C 1.53001 * 109.46674 * 62.44729 * 25 24 23 28 28 O 1.42901 * 109.46155 * 302.44168 * 25 24 23 29 29 H 1.09001 * 109.46870 * 300.00117 * 1 2 3 30 30 H 1.09000 * 109.47220 * 59.99537 * 1 2 3 31 31 H 1.08991 * 109.46870 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47455 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47416 * 300.00342 * 3 2 1 34 34 H 1.09001 * 109.47309 * 60.00151 * 3 2 1 35 35 H 0.96997 * 119.99908 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.46869 * 179.97438 * 12 2 1 37 37 H 1.09002 * 109.47016 * 59.99937 * 12 2 1 38 38 H 0.96995 * 119.99885 * 0.02562 * 13 12 2 39 39 H 0.97000 * 119.99718 * 359.97438 * 18 16 14 40 40 H 1.09000 * 109.47167 * 60.00180 * 19 18 16 41 41 H 1.08991 * 109.47617 * 300.00131 * 19 18 16 42 42 H 1.09004 * 109.52607 * 57.68721 * 22 20 19 43 43 H 1.09000 * 109.52199 * 297.50098 * 22 20 19 44 44 H 1.09002 * 109.54459 * 62.88629 * 23 22 20 45 45 H 1.08999 * 109.54390 * 183.06550 * 23 22 20 46 46 H 1.09006 * 109.52033 * 176.93325 * 24 23 22 47 47 H 1.09002 * 109.52377 * 297.11395 * 24 23 22 48 48 H 1.09005 * 109.47062 * 179.97438 * 26 25 24 49 49 H 1.09006 * 109.47265 * 299.98130 * 26 25 24 50 50 H 1.08994 * 109.47412 * 59.98749 * 26 25 24 51 51 H 1.08991 * 109.47093 * 300.00680 * 27 25 24 52 52 H 1.09000 * 109.47288 * 60.00981 * 27 25 24 53 53 H 1.08999 * 109.46834 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 3.1454 -2.2875 -3.6040 10 1 1.1659 -1.5863 -4.8162 11 1 3.1466 -0.1871 -4.8166 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4916 3.6695 15 8 2.5746 -1.4782 3.7807 16 6 1.3793 0.2132 4.8898 17 8 0.6821 1.2002 4.7784 18 7 1.7049 -0.2473 6.1138 19 6 1.2167 0.4433 7.3100 20 6 1.7262 -0.2784 8.5592 21 1 2.8162 -0.2794 8.5595 22 6 1.2155 0.4427 9.8094 23 6 1.6794 -0.3197 11.0544 24 6 1.1777 -1.7647 10.9733 25 6 1.6900 -2.4005 9.6760 26 6 1.1438 -3.8246 9.5562 27 6 3.2193 -2.4406 9.6970 28 8 1.2488 -1.6254 8.5594 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 0.7095 1.1620 -3.4844 36 1 3.1300 -0.7217 1.2489 37 1 1.6767 -1.7490 1.2491 38 1 0.9938 0.7577 2.3564 39 1 2.2620 -1.0364 6.2028 40 1 0.1267 0.4433 7.3101 41 1 1.5799 1.4709 7.3101 42 1 0.1263 0.4793 9.7895 43 1 1.6145 1.4567 9.8335 44 1 2.7684 -0.3138 11.1008 45 1 1.2737 0.1576 11.9464 46 1 1.5498 -2.3280 11.8292 47 1 0.0878 -1.7727 10.9769 48 1 1.5075 -4.2768 8.6334 49 1 1.4804 -4.4158 10.4079 50 1 0.0543 -3.7960 9.5416 51 1 3.6082 -1.4260 9.7828 52 1 3.5556 -3.0318 10.5487 53 1 3.5836 -2.8922 8.7743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930820328.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = -157.285422 kcal Electronic energy + Delta-G solvation = -30487.852150 eV Core-core repulsion = 26358.069484 eV Total energy + Delta-G solvation = -4129.782666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.76500 -41.01477 -39.68986 -38.19341 -36.60284 -35.08420 -34.60645 -34.15287 -32.74170 -30.39477 -28.39377 -28.07541 -27.58774 -27.35322 -26.82975 -24.69615 -23.12523 -22.78545 -21.43544 -20.71259 -20.20636 -19.66457 -18.02949 -17.70007 -17.55842 -16.97984 -16.87025 -16.56770 -16.52201 -16.04553 -15.95242 -15.56895 -15.18223 -14.94608 -14.76509 -14.52396 -14.42649 -14.04554 -13.97992 -13.80195 -13.53886 -13.22100 -13.13904 -13.10916 -12.92921 -12.80057 -12.78727 -12.71035 -12.55857 -12.54695 -12.28033 -12.11972 -12.04666 -11.86302 -11.67872 -11.50921 -11.30324 -11.02220 -10.76883 -10.64282 -10.41549 -10.35083 -10.26532 -10.11999 -8.01349 -6.17692 0.34952 1.34928 1.43246 1.47578 1.56920 2.14859 2.45301 2.57671 2.75243 3.22419 3.46854 3.61718 3.82467 3.85257 3.91694 4.08528 4.09468 4.31526 4.34596 4.37860 4.46583 4.47192 4.64035 4.67825 4.68749 4.71455 4.80632 4.89994 4.92323 4.93515 5.04029 5.04237 5.05314 5.06225 5.12119 5.14601 5.17227 5.17813 5.21925 5.26077 5.36329 5.48063 5.50911 5.64750 5.67984 5.93641 6.11130 6.18928 6.35160 6.38449 6.41549 6.73173 6.86630 6.96664 7.50154 8.98138 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.001953 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.287646 B =14331.617469 C =14931.443424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.049 3.951 3 C -0.123 4.123 4 C -0.523 4.523 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.143 3.857 13 N -0.681 5.681 14 C 0.497 3.503 15 O -0.551 6.551 16 C 0.513 3.487 17 O -0.543 6.543 18 N -0.683 5.683 19 C 0.124 3.876 20 C 0.080 3.920 21 H 0.078 0.922 22 C -0.145 4.145 23 C -0.121 4.121 24 C -0.140 4.140 25 C 0.104 3.896 26 C -0.140 4.140 27 C -0.179 4.179 28 O -0.390 6.390 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.413 0.587 39 H 0.419 0.581 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.089 0.911 50 H 0.056 0.944 51 H 0.067 0.933 52 H 0.081 0.919 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 -2.378 30.503 30.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.181 4.181 4 C -0.562 4.562 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.278 3.722 15 O -0.431 6.431 16 C 0.293 3.707 17 O -0.420 6.420 18 N -0.335 5.335 19 C 0.001 3.999 20 C 0.022 3.978 21 H 0.096 0.904 22 C -0.183 4.183 23 C -0.158 4.158 24 C -0.178 4.178 25 C 0.066 3.934 26 C -0.197 4.197 27 C -0.237 4.237 28 O -0.310 6.310 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.251 0.749 39 H 0.256 0.744 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.107 0.893 50 H 0.075 0.925 51 H 0.086 0.914 52 H 0.100 0.900 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.633 -2.337 30.220 30.354 hybrid contribution 0.279 -0.362 -1.143 1.231 sum 1.912 -2.699 29.076 29.264 Atomic orbital electron populations 1.21706 0.97366 0.98884 1.00213 1.18400 0.93153 0.93092 0.90519 1.21700 0.98246 0.97945 1.00226 1.21255 1.31648 1.12193 0.91105 0.93060 1.25513 0.95174 0.95623 1.01198 1.69933 1.37076 1.23395 1.23568 0.85642 0.78028 0.78710 0.80014 1.19650 1.20934 1.20867 1.21551 0.97957 0.95464 0.83012 1.46060 1.50781 1.31456 1.04976 1.20342 0.81686 0.84877 0.85313 1.90711 1.38562 1.26680 1.87099 1.19987 0.81181 0.84430 0.85109 1.90749 1.37870 1.26377 1.87040 1.45627 1.51757 1.31894 1.04236 1.21725 1.00336 0.96422 0.81374 1.22352 0.98851 0.82775 0.93826 0.90379 1.22118 1.02174 1.00325 0.93679 1.21634 1.01657 0.94819 0.97723 1.22205 1.01309 0.96869 0.97406 1.21709 0.94025 0.91637 0.86052 1.21799 1.01391 0.93579 1.02921 1.22463 0.94962 1.03114 1.03122 1.87995 1.74178 1.22392 1.46472 0.95189 0.91746 0.95807 0.95704 0.91764 0.95153 0.93059 0.92658 0.92839 0.74897 0.74431 0.90956 0.88287 0.91155 0.88974 0.90738 0.90146 0.89438 0.91785 0.92813 0.89250 0.92515 0.91402 0.90021 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.08 71.98 0.58 -5.15 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 3 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 4 C -0.52 -27.49 8.01 25.60 0.21 -27.28 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 6 C 0.02 1.29 5.15 84.65 0.44 1.73 16 7 N -0.90 -48.64 9.35 21.45 0.20 -48.44 16 8 Si 0.95 42.60 29.54 68.60 2.03 44.62 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.14 6.07 4.50 86.38 0.39 6.45 16 13 N -0.68 -25.50 4.95 -464.42 -2.30 -27.80 16 14 C 0.50 17.71 7.89 87.27 0.69 18.40 16 15 O -0.55 -21.49 16.48 -3.23 -0.05 -21.54 16 16 C 0.51 15.87 7.89 87.27 0.69 16.56 16 17 O -0.54 -18.66 16.48 -3.27 -0.05 -18.71 16 18 N -0.68 -16.47 5.44 -464.42 -2.53 -18.99 16 19 C 0.12 2.30 5.37 86.38 0.46 2.76 16 20 C 0.08 1.14 2.40 30.63 0.07 1.22 16 21 H 0.08 0.99 6.34 -2.39 -0.02 0.98 16 22 C -0.14 -1.49 5.42 30.68 0.17 -1.32 16 23 C -0.12 -0.99 5.71 30.71 0.18 -0.82 16 24 C -0.14 -1.38 4.94 30.75 0.15 -1.22 16 25 C 0.10 1.38 1.11 -10.70 -0.01 1.37 16 26 C -0.14 -1.82 8.85 71.98 0.64 -1.19 16 27 C -0.18 -1.99 7.93 71.98 0.57 -1.42 16 28 O -0.39 -7.05 9.62 -148.98 -1.43 -8.49 16 29 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 30 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 31 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 34 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 35 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 36 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.41 15.09 5.63 -92.71 -0.52 14.57 16 39 H 0.42 9.77 7.82 -92.71 -0.72 9.04 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.52 6.62 -2.39 -0.02 0.51 16 45 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.07 0.67 4.98 -2.39 -0.01 0.66 16 52 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 53 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -61.44 408.59 1.29 -60.14 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.34 Total: 31.95 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.77 Total: 7.27 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -4.63 Total: -95.23 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -1.54 Total: -48.74 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -61.44 1.29 -60.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930820328.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.144 kcal (2) G-P(sol) polarization free energy of solvation -61.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds