Wall clock time and date at job start Sat Apr 11 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47007 * 2 1 4 4 C 1.53002 * 109.47085 * 239.99829 * 2 1 3 5 5 O 1.45202 * 109.46907 * 119.99665 * 2 1 3 6 6 C 1.34639 * 116.99837 * 60.00336 * 5 2 1 7 7 O 1.21511 * 120.00402 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00236 * 180.02562 * 6 5 2 9 9 C 1.47210 * 126.69673 * 0.02562 * 8 6 5 10 10 C 1.53768 * 106.39905 * 148.68016 * 9 8 6 11 11 H 1.08997 * 112.04139 * 255.55296 * 10 9 8 12 12 C 1.54304 * 109.07754 * 130.90580 * 10 9 8 13 13 N 1.48525 * 104.69150 * 223.70116 * 12 10 9 14 14 C 1.46896 * 111.00653 * 159.22844 * 13 12 10 15 15 C 1.53003 * 109.46953 * 69.87032 * 14 13 12 16 16 H 1.08999 * 109.47344 * 60.00500 * 15 14 13 17 17 O 1.42907 * 109.47366 * 300.00138 * 15 14 13 18 18 C 1.50703 * 109.47202 * 180.02562 * 15 14 13 19 19 H 1.08002 * 119.99685 * 359.97438 * 18 15 14 20 20 C 1.37877 * 120.00216 * 180.02562 * 18 15 14 21 21 N 1.31516 * 120.00069 * 179.97438 * 20 18 15 22 22 Si 1.86800 * 119.99806 * 359.97438 * 20 18 15 23 23 H 1.48503 * 109.46845 * 90.00621 * 22 20 18 24 24 H 1.48503 * 109.47399 * 210.00111 * 22 20 18 25 25 H 1.48498 * 109.47295 * 330.00717 * 22 20 18 26 26 C 1.48519 * 104.20883 * 39.67666 * 13 12 10 27 27 C 1.54305 * 104.69518 * 320.32199 * 26 13 12 28 28 C 1.52995 * 112.88522 * 261.54079 * 27 26 13 29 29 C 1.47198 * 126.70610 * 180.02562 * 8 6 5 30 30 H 1.08994 * 109.47198 * 300.00380 * 1 2 3 31 31 H 1.08997 * 109.46988 * 60.00177 * 1 2 3 32 32 H 1.08999 * 109.47022 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47360 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47445 * 299.99463 * 3 2 1 35 35 H 1.09004 * 109.47610 * 59.99731 * 3 2 1 36 36 H 1.09007 * 109.46946 * 299.99940 * 4 2 1 37 37 H 1.08997 * 109.47213 * 60.00131 * 4 2 1 38 38 H 1.09002 * 109.46575 * 180.02562 * 4 2 1 39 39 H 1.09001 * 110.07018 * 29.45026 * 9 8 6 40 40 H 1.08998 * 110.11764 * 267.93727 * 9 8 6 41 41 H 1.09001 * 110.39733 * 104.89388 * 12 10 9 42 42 H 1.09002 * 110.39431 * 342.49905 * 12 10 9 43 43 H 1.09008 * 109.47013 * 309.87653 * 14 13 12 44 44 H 1.08996 * 109.47783 * 189.86751 * 14 13 12 45 45 H 0.96696 * 114.00317 * 300.00645 * 17 15 14 46 46 H 0.97000 * 119.99667 * 179.97438 * 21 20 18 47 47 H 1.08996 * 110.39585 * 79.12784 * 26 13 12 48 48 H 1.09001 * 110.39368 * 201.52201 * 26 13 12 49 49 H 1.08998 * 109.47917 * 178.23761 * 28 27 26 50 50 H 1.09000 * 109.47102 * 298.24316 * 28 27 26 51 51 H 1.09007 * 109.46954 * 58.23677 * 28 27 26 52 52 H 1.08996 * 110.06825 * 330.54755 * 29 8 6 53 53 H 1.08996 * 110.07337 * 92.02846 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9509 -2.5095 0.5041 8 7 2.0671 -2.6654 2.4173 9 6 2.9135 -2.1644 3.5126 10 6 2.4804 -2.9235 4.7778 11 1 1.8771 -2.3032 5.4405 12 6 3.7335 -3.4792 5.4863 13 7 3.3650 -4.8656 5.8710 14 6 4.5628 -5.6838 6.1028 15 6 5.2616 -5.2144 7.3804 16 1 4.5814 -5.3184 8.2258 17 8 5.6408 -3.8437 7.2399 18 6 6.4908 -6.0533 7.6180 19 1 6.7476 -6.8427 6.9271 20 6 7.2869 -5.8139 8.7179 21 7 8.3593 -6.5463 8.9255 22 14 6.8422 -4.4491 9.9134 23 1 5.9619 -4.9918 10.9790 24 1 8.0807 -3.9034 10.5247 25 1 6.1306 -3.3670 9.1868 26 6 2.5907 -5.3727 4.7094 27 6 1.7245 -4.1760 4.2640 28 6 0.2929 -4.2458 4.7992 29 6 1.7625 -4.0710 2.7304 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7216 -1.2489 39 1 2.7570 -1.0941 3.6467 40 1 3.9630 -2.3647 3.2971 41 1 3.9629 -2.8873 6.3724 42 1 4.5834 -3.4877 4.8037 43 1 5.2431 -5.5798 5.2575 44 1 4.2736 -6.7292 6.2101 45 1 6.2469 -3.6766 6.5053 46 1 8.9195 -6.3776 9.6992 47 1 3.2637 -5.6741 3.9067 48 1 1.9584 -6.2082 5.0100 49 1 -0.2585 -3.3620 4.4786 50 1 -0.1965 -5.1396 4.4123 51 1 0.3138 -4.2857 5.8884 52 1 0.7940 -4.3459 2.3127 53 1 2.5404 -4.7207 2.3295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931613190.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:07 Heat of formation + Delta-G solvation = -137.264922 kcal Electronic energy + Delta-G solvation = -31624.462697 eV Core-core repulsion = 27495.548185 eV Total energy + Delta-G solvation = -4128.914512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.13900 -41.14189 -38.75467 -37.84243 -36.40687 -35.04649 -34.39905 -33.54313 -32.26189 -30.32804 -28.36577 -28.29945 -28.00167 -27.23699 -26.95574 -24.51639 -22.72700 -22.40054 -21.91074 -20.49807 -20.06499 -19.26365 -18.75711 -17.67806 -17.50514 -16.92838 -16.83252 -16.32874 -16.22975 -16.05693 -15.62300 -15.51382 -15.32295 -14.89469 -14.80664 -14.63189 -14.27777 -14.09441 -13.75978 -13.62122 -13.40862 -13.30052 -13.19655 -13.06383 -12.88858 -12.87490 -12.86068 -12.83142 -12.56424 -12.46646 -12.43441 -12.27411 -12.01382 -11.79687 -11.69104 -11.61078 -11.54705 -11.40368 -11.11772 -11.03425 -10.77756 -10.02137 -9.89163 -9.27014 -8.32715 -6.47296 1.01388 1.44335 1.49363 1.68324 1.78995 2.47007 2.81792 3.05640 3.08399 3.28992 3.50155 3.73471 3.75505 3.80223 3.94648 4.00586 4.08352 4.12479 4.16456 4.30134 4.41363 4.43580 4.49696 4.58575 4.61661 4.65213 4.69313 4.73002 4.75485 4.76391 4.79161 4.84203 4.87716 4.95803 4.98506 5.01241 5.08341 5.12339 5.15815 5.25163 5.27781 5.31260 5.34595 5.39423 5.44275 5.47073 5.59480 6.01065 6.11343 6.18647 6.38062 6.65829 7.20003 7.21212 7.36864 8.81445 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.002480 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.177385 B =11285.493653 C =11876.214786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.367 6.367 6 C 0.666 3.334 7 O -0.592 6.592 8 N -0.603 5.603 9 C 0.112 3.888 10 C -0.091 4.091 11 H 0.105 0.895 12 C 0.048 3.952 13 N -0.512 5.512 14 C 0.046 3.954 15 C 0.212 3.788 16 H 0.053 0.947 17 O -0.573 6.573 18 C -0.564 4.564 19 H 0.034 0.966 20 C 0.027 3.973 21 N -0.942 5.942 22 Si 0.941 3.059 23 H -0.289 1.289 24 H -0.302 1.302 25 H -0.198 1.198 26 C 0.043 3.957 27 C -0.063 4.063 28 C -0.119 4.119 29 C 0.134 3.866 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.028 0.972 44 H 0.067 0.933 45 H 0.363 0.637 46 H 0.266 0.734 47 H 0.045 0.955 48 H 0.088 0.912 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.083 0.917 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 15.550 -17.846 29.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.281 6.281 6 C 0.422 3.578 7 O -0.483 6.483 8 N -0.343 5.343 9 C -0.011 4.011 10 C -0.111 4.111 11 H 0.124 0.876 12 C -0.080 4.080 13 N -0.236 5.236 14 C -0.083 4.083 15 C 0.154 3.846 16 H 0.070 0.930 17 O -0.380 6.380 18 C -0.602 4.602 19 H 0.052 0.948 20 C -0.173 4.173 21 N -0.582 5.582 22 Si 0.766 3.234 23 H -0.216 1.216 24 H -0.229 1.229 25 H -0.119 1.119 26 C -0.086 4.086 27 C -0.065 4.065 28 C -0.177 4.177 29 C 0.013 3.987 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.211 0.789 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.075 0.925 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.102 0.898 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.188 15.529 -17.149 29.429 hybrid contribution 1.448 -0.505 -0.493 1.611 sum -16.740 15.024 -17.642 28.586 Atomic orbital electron populations 1.22460 0.93776 1.03630 1.03645 1.22455 0.94759 0.92691 0.81391 1.21883 1.02355 0.90617 1.04395 1.22472 1.01499 1.02182 0.97496 1.86329 1.71561 1.22760 1.47479 1.17583 0.78374 0.80734 0.81075 1.90885 1.42567 1.71153 1.43693 1.47280 1.52889 1.13003 1.21154 1.22328 0.94256 0.99972 0.84503 1.22804 0.96821 0.95868 0.95568 0.87638 1.23336 0.94725 0.90261 0.99699 1.65368 1.19196 1.02538 1.36491 1.22608 0.90491 0.97374 0.97823 1.19452 0.91776 0.79563 0.93849 0.92965 1.86631 1.67751 1.28205 1.55367 1.21843 1.10251 1.18224 1.09875 0.94760 1.25883 0.93923 0.98099 0.99378 1.70095 1.16469 1.41828 1.29777 0.85959 0.77470 0.82185 0.77796 1.21619 1.22911 1.11918 1.23288 0.95984 0.97151 0.92129 1.21957 0.97118 0.94720 0.92684 1.21609 0.92332 1.02187 1.01527 1.22230 1.02245 0.79657 0.94601 0.91983 0.88943 0.92026 0.91410 0.87792 0.91194 0.92074 0.88882 0.92233 0.89094 0.90812 0.88874 0.93896 0.95388 0.91487 0.78942 0.92570 0.93685 0.89359 0.92474 0.91287 0.91663 0.89828 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 8.37 71.98 0.60 -2.33 16 2 C 0.12 2.12 1.13 -10.79 -0.01 2.11 16 3 C -0.14 -1.50 8.85 71.98 0.64 -0.86 16 4 C -0.18 -3.07 8.37 71.98 0.60 -2.47 16 5 O -0.37 -8.24 9.38 -55.49 -0.52 -8.76 16 6 C 0.67 16.93 7.96 129.79 1.03 17.96 16 7 O -0.59 -17.28 12.11 19.81 0.24 -17.04 16 8 N -0.60 -13.63 3.32 -945.60 -3.14 -16.77 16 9 C 0.11 2.21 6.56 86.50 0.57 2.78 16 10 C -0.09 -1.87 3.69 -9.39 -0.03 -1.90 16 11 H 0.11 2.06 7.94 -2.39 -0.02 2.04 16 12 C 0.05 1.23 4.58 86.43 0.40 1.62 16 13 N -0.51 -15.09 5.37 -882.01 -4.74 -19.83 16 14 C 0.05 1.65 4.60 86.30 0.40 2.04 16 15 C 0.21 9.21 2.57 29.85 0.08 9.29 16 16 H 0.05 2.42 7.57 -2.39 -0.02 2.40 16 17 O -0.57 -22.66 7.11 -148.98 -1.06 -23.71 16 18 C -0.56 -30.71 9.34 25.60 0.24 -30.47 16 19 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 20 C 0.03 1.51 5.47 84.65 0.46 1.97 16 21 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 22 Si 0.94 44.33 26.99 68.60 1.85 46.18 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.20 -8.64 5.31 99.48 0.53 -8.11 16 26 C 0.04 1.00 5.67 86.43 0.49 1.49 16 27 C -0.06 -1.27 1.08 -50.78 -0.05 -1.32 16 28 C -0.12 -2.11 8.58 71.98 0.62 -1.50 16 29 C 0.13 2.80 6.20 86.50 0.54 3.34 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.37 5.88 -2.39 -0.01 1.35 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.06 1.40 5.88 -2.38 -0.01 1.39 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.64 7.92 -2.39 -0.02 1.62 16 40 H 0.07 1.47 7.10 -2.39 -0.02 1.46 16 41 H 0.09 2.69 6.54 -2.39 -0.02 2.67 16 42 H 0.04 1.10 6.80 -2.39 -0.02 1.09 16 43 H 0.03 1.02 7.88 -2.38 -0.02 1.00 16 44 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 45 H 0.36 12.83 8.90 -74.06 -0.66 12.17 16 46 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 47 H 0.04 1.07 7.00 -2.39 -0.02 1.05 16 48 H 0.09 1.98 7.92 -2.39 -0.02 1.96 16 49 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 52 H 0.08 1.77 7.61 -2.39 -0.02 1.75 16 53 H 0.07 1.51 7.10 -2.39 -0.02 1.49 16 Total: -1.00 -68.09 398.69 -0.45 -68.54 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.05 Total: 27.39 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 6.56 Total: 1.75 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -7.57 Total: -94.35 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -1.34 Total: -49.51 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.85 Total: 46.18 kcal Total: -68.09 -0.45 -68.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931613190.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.725 kcal (2) G-P(sol) polarization free energy of solvation -68.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds