Wall clock time and date at job start Sat Apr 11 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47118 * 2 1 4 4 C 1.50705 * 109.50282 * 60.07518 * 3 2 1 5 5 O 1.20823 * 119.99734 * 119.92010 * 4 3 2 6 6 O 1.34222 * 120.00142 * 299.92720 * 4 3 2 7 7 C 1.45199 * 117.00304 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47384 * 59.99184 * 7 6 4 9 9 C 1.52996 * 109.47564 * 179.97438 * 7 6 4 10 10 C 1.53003 * 109.46901 * 299.99630 * 7 6 4 11 11 C 1.53119 * 109.50323 * 300.00086 * 3 2 1 12 12 C 1.53121 * 109.15914 * 297.71150 * 11 3 2 13 13 C 1.53040 * 109.27937 * 302.34798 * 12 11 3 14 14 N 1.46851 * 109.52400 * 59.17623 * 13 12 11 15 15 C 1.46896 * 110.99872 * 174.16130 * 14 13 12 16 16 C 1.50700 * 109.46942 * 66.04706 * 15 14 13 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99808 * 23 21 19 25 25 H 1.48504 * 109.46757 * 209.99794 * 23 21 19 26 26 H 1.48492 * 109.47185 * 329.99590 * 23 21 19 27 27 C 1.46844 * 111.19549 * 298.26095 * 14 13 12 28 28 H 1.08998 * 109.47049 * 300.00083 * 1 2 3 29 29 H 1.08996 * 109.47047 * 60.00333 * 1 2 3 30 30 H 1.09003 * 109.46590 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47516 * 240.00172 * 2 1 3 32 32 H 1.09004 * 109.46881 * 119.99428 * 2 1 3 33 33 H 1.09001 * 109.46656 * 60.00405 * 8 7 6 34 34 H 1.08999 * 109.47076 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47399 * 300.00785 * 8 7 6 36 36 H 1.09004 * 109.47313 * 59.99911 * 9 7 6 37 37 H 1.08999 * 109.47379 * 179.97438 * 9 7 6 38 38 H 1.09001 * 109.47057 * 299.99950 * 9 7 6 39 39 H 1.09006 * 109.47016 * 59.99470 * 10 7 6 40 40 H 1.08999 * 109.47393 * 180.02562 * 10 7 6 41 41 H 1.09008 * 109.46866 * 300.00256 * 10 7 6 42 42 H 1.08995 * 109.52356 * 177.80357 * 11 3 2 43 43 H 1.08998 * 109.57386 * 57.64697 * 11 3 2 44 44 H 1.08998 * 109.50720 * 182.40108 * 12 11 3 45 45 H 1.09004 * 109.53428 * 62.30391 * 12 11 3 46 46 H 1.08998 * 109.45841 * 299.16311 * 13 12 11 47 47 H 1.08994 * 109.45235 * 179.18876 * 13 12 11 48 48 H 1.08994 * 109.47346 * 306.05012 * 15 14 13 49 49 H 1.08998 * 109.47279 * 186.04684 * 15 14 13 50 50 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 51 51 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 52 52 H 1.09001 * 109.45981 * 181.75660 * 27 14 13 53 53 H 1.09002 * 109.46484 * 301.72096 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5396 2.1531 1.2312 5 8 2.3260 2.6108 2.0261 6 8 0.2203 2.2774 1.4447 7 6 -0.1896 2.9741 2.6509 8 6 0.3594 4.4021 2.6266 9 6 -1.7173 3.0167 2.7213 10 6 0.3575 2.2383 3.8757 11 6 1.5300 2.1651 -1.2500 12 6 2.0909 1.4722 -2.4949 13 6 3.6198 1.4722 -2.4275 14 7 4.0576 0.7690 -1.2149 15 6 5.5196 0.6284 -1.1868 16 6 6.1528 1.9901 -1.0600 17 8 5.4549 2.9803 -0.9995 18 7 7.4946 2.1076 -1.0138 19 6 8.0707 3.3463 -0.8979 20 1 7.4492 4.2280 -0.8441 21 6 9.4542 3.4679 -0.8561 22 7 10.2104 2.3952 -0.9221 23 14 10.2393 5.1563 -0.7060 24 1 10.4147 5.4948 0.7292 25 1 11.5635 5.1479 -1.3781 26 1 9.3639 6.1683 -1.3499 27 6 3.5703 1.4435 -0.0049 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 -0.0304 4.9263 1.7540 34 1 0.0520 4.9249 3.5323 35 1 1.4478 4.3722 2.5763 36 1 -2.1087 1.9995 2.7385 37 1 -2.0249 3.5393 3.6270 38 1 -2.1067 3.5411 1.8487 39 1 1.4460 2.2083 3.8254 40 1 0.0495 2.7610 4.7813 41 1 -0.0335 1.2209 3.8930 42 1 1.8606 3.2035 -1.2308 43 1 0.4408 2.1300 -1.2732 44 1 1.7660 2.0077 -3.3870 45 1 1.7285 0.4450 -2.5348 46 1 3.9822 2.4999 -2.4022 47 1 4.0219 0.9668 -3.3055 48 1 5.8569 0.1554 -2.1089 49 1 5.8090 0.0124 -0.3354 50 1 8.0528 1.3158 -1.0625 51 1 11.1762 2.4801 -0.8925 52 1 3.9366 0.9173 0.8766 53 1 3.9330 2.4713 0.0091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932686280.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:10 Heat of formation + Delta-G solvation = -145.613225 kcal Electronic energy + Delta-G solvation = -32514.774194 eV Core-core repulsion = 28385.497672 eV Total energy + Delta-G solvation = -4129.276522 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37251 -40.96459 -39.39069 -37.90019 -36.40446 -35.59011 -34.67961 -33.37558 -32.93307 -30.77805 -28.91620 -28.40896 -28.29008 -26.59129 -25.82108 -24.55229 -23.61323 -22.60519 -21.25978 -20.70712 -19.99648 -19.49348 -18.00387 -17.84749 -17.64146 -17.13121 -16.75042 -16.38251 -16.17695 -15.84981 -15.73432 -15.59740 -15.32981 -15.28774 -14.65934 -14.53032 -14.34987 -13.95789 -13.84910 -13.53721 -13.51650 -13.35132 -13.18303 -13.09578 -13.04311 -13.02379 -12.86481 -12.55868 -12.48828 -12.47449 -12.40326 -12.26115 -12.15195 -11.92243 -11.76444 -11.66849 -11.48713 -11.33935 -11.23573 -11.14632 -10.94411 -10.74534 -10.02069 -9.02810 -8.49553 -5.99477 1.21979 1.32169 1.36203 1.48749 1.63113 1.98977 2.25560 2.99845 3.16017 3.23034 3.48534 3.64879 3.73964 3.77882 3.82335 3.94955 4.05392 4.15539 4.25218 4.37930 4.41129 4.48946 4.55021 4.56421 4.59579 4.64126 4.72862 4.73299 4.80172 4.81100 4.82825 4.88085 4.91345 4.95976 5.04714 5.10231 5.11252 5.14742 5.19884 5.23430 5.26266 5.31015 5.36318 5.42616 5.46255 5.55239 5.72931 5.86125 6.01062 6.07992 6.55748 6.85223 7.08531 7.51725 8.07697 8.65874 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.003134 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.326093 B = 8932.752819 C =10128.681511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.098 4.098 3 C -0.038 4.038 4 C 0.475 3.525 5 O -0.534 6.534 6 O -0.333 6.333 7 C 0.101 3.899 8 C -0.183 4.183 9 C -0.131 4.131 10 C -0.180 4.180 11 C -0.104 4.104 12 C -0.101 4.101 13 C 0.034 3.966 14 N -0.489 5.489 15 C 0.049 3.951 16 C 0.406 3.594 17 O -0.621 6.621 18 N -0.570 5.570 19 C -0.334 4.334 20 H 0.074 0.926 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.267 1.267 26 H -0.275 1.275 27 C 0.063 3.937 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.024 0.976 47 H 0.084 0.916 48 H 0.119 0.881 49 H 0.106 0.894 50 H 0.396 0.604 51 H 0.278 0.722 52 H 0.054 0.946 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.825 -6.422 2.253 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 C -0.040 4.040 4 C 0.319 3.681 5 O -0.423 6.423 6 O -0.250 6.250 7 C 0.066 3.934 8 C -0.240 4.240 9 C -0.188 4.188 10 C -0.237 4.237 11 C -0.141 4.141 12 C -0.139 4.139 13 C -0.094 4.094 14 N -0.211 5.211 15 C -0.083 4.083 16 C 0.193 3.807 17 O -0.509 6.509 18 N -0.207 5.207 19 C -0.464 4.464 20 H 0.092 0.908 21 C -0.211 4.211 22 N -0.558 5.558 23 Si 0.813 3.187 24 H -0.199 1.199 25 H -0.191 1.191 26 H -0.200 1.200 27 C -0.065 4.065 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.120 0.880 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.043 0.957 47 H 0.102 0.898 48 H 0.137 0.863 49 H 0.124 0.876 50 H 0.230 0.770 51 H 0.088 0.912 52 H 0.072 0.928 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -24.082 -6.127 2.540 24.979 hybrid contribution 2.054 1.691 0.523 2.712 sum -22.028 -4.436 3.063 22.678 Atomic orbital electron populations 1.22080 0.93643 1.02460 1.03423 1.21490 0.97287 0.91018 1.03697 1.20606 0.94704 0.97978 0.90693 1.23855 0.80947 0.76228 0.87081 1.90604 1.57962 1.46419 1.47325 1.86647 1.24222 1.69634 1.44471 1.22496 0.97360 0.91080 0.82500 1.22470 1.01888 0.95926 1.03710 1.21840 0.88815 1.04113 1.04043 1.22448 1.02041 1.01369 0.97812 1.21635 1.02102 0.97588 0.92818 1.21570 0.92779 1.02573 0.96947 1.22357 0.97261 0.97457 0.92286 1.62491 1.07555 1.48864 1.02237 1.22171 0.88109 0.92439 1.05588 1.22217 0.82638 0.93298 0.82536 1.90422 1.61778 1.41530 1.57189 1.42118 1.05893 1.08834 1.63828 1.19610 0.90741 0.86535 1.49477 0.90816 1.26009 0.96106 1.02704 0.96292 1.69668 1.06171 1.29982 1.50018 0.84982 0.77701 0.77396 0.78582 1.19860 1.19124 1.19952 1.21988 0.92700 0.99370 0.92453 0.91569 0.91401 0.91332 0.88218 0.92835 0.91827 0.89165 0.93433 0.90549 0.88614 0.91078 0.93099 0.89315 0.91080 0.94608 0.88034 0.89509 0.88555 0.95739 0.89752 0.86278 0.87615 0.76969 0.91217 0.92767 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.05 71.98 0.65 -2.04 16 2 C -0.10 -2.14 4.54 30.60 0.14 -2.00 16 3 C -0.04 -1.09 0.51 -52.87 -0.03 -1.12 16 4 C 0.47 14.70 5.80 71.24 0.41 15.11 16 5 O -0.53 -20.56 11.49 21.97 0.25 -20.31 16 6 O -0.33 -8.15 6.75 -51.34 -0.35 -8.49 16 7 C 0.10 2.13 1.13 -10.79 -0.01 2.11 16 8 C -0.18 -4.29 8.37 71.98 0.60 -3.68 16 9 C -0.13 -1.71 8.85 71.98 0.64 -1.07 16 10 C -0.18 -3.81 8.37 71.98 0.60 -3.21 16 11 C -0.10 -2.66 4.43 30.67 0.14 -2.52 16 12 C -0.10 -2.30 5.74 30.65 0.18 -2.13 16 13 C 0.03 1.06 5.09 86.33 0.44 1.50 16 14 N -0.49 -15.82 4.14 -900.96 -3.73 -19.55 16 15 C 0.05 1.71 5.86 85.56 0.50 2.21 16 16 C 0.41 19.51 7.20 87.66 0.63 20.14 16 17 O -0.62 -34.25 11.20 -3.07 -0.03 -34.29 16 18 N -0.57 -29.90 5.29 -306.98 -1.62 -31.52 16 19 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 20 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 22 N -0.92 -50.44 13.05 21.66 0.28 -50.16 16 23 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 27 C 0.06 2.32 2.99 86.32 0.26 2.57 16 28 H 0.07 1.23 5.33 -2.39 -0.01 1.22 16 29 H 0.07 1.02 6.38 -2.39 -0.02 1.01 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 2.07 6.01 -2.39 -0.01 2.05 16 32 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 1.50 5.89 -2.39 -0.01 1.48 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 1.45 5.89 -2.38 -0.01 1.44 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 2.05 6.32 -2.39 -0.02 2.03 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.10 1.77 6.59 -2.38 -0.02 1.75 16 46 H 0.02 0.99 6.00 -2.39 -0.01 0.97 16 47 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 48 H 0.12 3.55 8.06 -2.39 -0.02 3.53 16 49 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 50 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 51 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 52 H 0.05 2.09 8.10 -2.39 -0.02 2.07 16 53 H 0.04 2.13 5.30 -2.39 -0.01 2.12 16 Total: -1.00 -72.01 394.89 3.44 -68.57 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: 0.18 Total: 42.41 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.43 Total: 7.09 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.07 Total: -101.22 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -0.13 Total: -63.09 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.01 3.44 -68.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932686280.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.043 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds