Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00243 * 2 1 4 4 H 1.48504 * 109.46897 * 240.00077 * 3 2 1 5 5 H 1.48497 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47113 * 119.99919 * 3 2 1 7 7 C 1.37881 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99984 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.46765 * 180.02562 * 9 7 2 11 11 C 1.42909 * 113.99925 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47400 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47088 * 64.99470 * 12 11 10 14 14 C 1.46904 * 111.00134 * 175.04818 * 13 12 11 15 15 C 1.50697 * 109.47281 * 305.08350 * 14 13 12 16 16 O 1.21283 * 120.00383 * 122.31056 * 15 14 13 17 17 N 1.34779 * 119.99941 * 302.03386 * 15 14 13 18 18 C 1.47154 * 120.97855 * 354.16302 * 17 15 14 19 19 C 1.53712 * 108.16177 * 129.43297 * 18 17 15 20 20 O 1.42963 * 109.15095 * 52.53591 * 19 18 17 21 21 C 1.42966 * 114.16368 * 297.29217 * 20 19 18 22 22 C 1.47147 * 120.98654 * 174.44315 * 17 15 14 23 23 C 1.53002 * 109.46752 * 65.07919 * 14 13 12 24 24 C 1.53004 * 109.47083 * 180.02562 * 23 14 13 25 25 C 1.53004 * 109.46763 * 299.99781 * 24 23 14 26 26 C 1.53002 * 109.47142 * 60.00255 * 25 24 23 27 27 C 1.52991 * 109.47513 * 185.07704 * 14 13 12 28 28 H 0.96999 * 119.99878 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46825 * 60.00076 * 9 7 2 30 30 H 1.08999 * 109.47178 * 300.00102 * 9 7 2 31 31 H 1.08995 * 109.46819 * 59.99375 * 11 10 9 32 32 H 1.09000 * 109.46729 * 299.99852 * 11 10 9 33 33 H 1.09002 * 109.47108 * 305.00122 * 12 11 10 34 34 H 1.08997 * 109.47216 * 184.99925 * 12 11 10 35 35 H 1.00899 * 110.99743 * 51.10398 * 13 12 11 36 36 H 1.09004 * 109.68053 * 249.21099 * 18 17 15 37 37 H 1.08994 * 109.68555 * 9.76397 * 18 17 15 38 38 H 1.09004 * 109.65669 * 292.57294 * 19 18 17 39 39 H 1.09007 * 109.44596 * 172.37179 * 19 18 17 40 40 H 1.08990 * 109.51380 * 302.65235 * 21 20 19 41 41 H 1.09000 * 109.55007 * 182.52437 * 21 20 19 42 42 H 1.08998 * 109.67942 * 350.23751 * 22 17 15 43 43 H 1.09006 * 109.68032 * 110.75185 * 22 17 15 44 44 H 1.09007 * 109.47220 * 299.99743 * 23 14 13 45 45 H 1.09003 * 109.47204 * 60.00188 * 23 14 13 46 46 H 1.08999 * 109.47059 * 180.02562 * 24 23 14 47 47 H 1.09003 * 109.47298 * 59.99815 * 24 23 14 48 48 H 1.09003 * 109.47242 * 300.00069 * 25 24 23 49 49 H 1.09003 * 109.46846 * 179.97438 * 25 24 23 50 50 H 1.08995 * 109.46929 * 180.02562 * 26 25 24 51 51 H 1.09003 * 109.47204 * 59.99791 * 26 25 24 52 52 H 1.09003 * 109.47382 * 300.00813 * 27 14 13 53 53 H 1.09008 * 109.46770 * 60.00247 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8755 0.0013 12 6 2.6478 -5.9563 0.0033 13 7 3.4060 -5.8874 1.2596 14 6 4.3783 -6.9850 1.3486 15 6 3.6675 -8.3016 1.1689 16 8 4.0028 -9.0556 0.2801 17 7 2.6626 -8.6438 1.9994 18 6 2.3256 -7.8101 3.1643 19 6 0.8130 -7.5381 3.1372 20 8 0.1150 -8.7805 3.0231 21 6 0.3870 -9.4958 1.8155 22 6 1.8742 -9.8651 1.7717 23 6 5.4336 -6.8216 0.2529 24 6 6.4459 -7.9651 0.3451 25 6 7.1251 -7.9356 1.7158 26 6 6.0698 -8.0990 2.8115 27 6 5.0574 -6.9550 2.7192 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 0.9457 -4.9826 -0.8893 32 1 0.9438 -4.9824 0.8906 33 1 3.3226 -5.7960 -0.8376 34 1 2.1819 -6.9376 -0.0866 35 1 2.7867 -5.8876 2.0561 36 1 2.5904 -8.3364 4.0814 37 1 2.8702 -6.8675 3.1111 38 1 0.5696 -6.9042 2.2845 39 1 0.5176 -7.0380 4.0597 40 1 0.1422 -8.8691 0.9581 41 1 -0.2147 -10.4042 1.7862 42 1 2.1198 -10.2840 0.7959 43 1 2.0949 -10.5951 2.5506 44 1 4.9498 -6.8431 -0.7237 45 1 5.9478 -5.8693 0.3828 46 1 7.1980 -7.8484 -0.4352 47 1 5.9314 -8.9173 0.2149 48 1 7.6396 -6.9835 1.8459 49 1 7.8460 -8.7505 1.7817 50 1 6.5537 -8.0775 3.7880 51 1 5.5554 -9.0512 2.6814 52 1 5.5716 -6.0027 2.8492 53 1 4.3056 -7.0714 3.4998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934055371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -131.118784 kcal Electronic energy + Delta-G solvation = -32662.815765 eV Core-core repulsion = 28534.167770 eV Total energy + Delta-G solvation = -4128.647996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56709 -39.95570 -38.83264 -38.20182 -36.59268 -35.70918 -34.81582 -32.79875 -31.72380 -31.51649 -29.48769 -29.01857 -27.91484 -25.50731 -24.61692 -24.49722 -24.04937 -22.83040 -22.23821 -21.47486 -20.08985 -18.63058 -18.08698 -17.71280 -17.52202 -17.40316 -17.04417 -16.70188 -16.47749 -16.38035 -16.23706 -15.94396 -15.64072 -15.30434 -15.12293 -14.97593 -14.78238 -14.36584 -14.16075 -13.93718 -13.67888 -13.36944 -13.28624 -13.21040 -13.03712 -12.93982 -12.83479 -12.75387 -12.57195 -12.43893 -12.28960 -12.01081 -11.89225 -11.84339 -11.77360 -11.37246 -11.29035 -11.24182 -10.95847 -10.84115 -10.79247 -10.21399 -9.70062 -9.44572 -8.29758 -6.41343 1.38337 1.41998 1.46345 1.54663 1.70450 2.36568 2.74209 2.82222 3.04386 3.12411 3.25681 3.55451 3.59616 3.74080 3.83871 3.97266 3.98641 4.02444 4.10047 4.10687 4.17847 4.22015 4.25810 4.34291 4.41899 4.47547 4.49713 4.54192 4.57656 4.62173 4.66660 4.73499 4.77122 4.82467 4.88014 4.91824 5.00474 5.04716 5.17461 5.19700 5.22778 5.23564 5.30545 5.31636 5.55950 5.57660 5.74175 5.98866 5.99231 6.16405 6.19496 6.56017 6.84932 6.97065 7.30446 8.82252 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.003300 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.213564 B = 8483.217774 C =10006.859845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.209 3.791 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 N -0.663 5.663 14 C 0.107 3.893 15 C 0.500 3.500 16 O -0.560 6.560 17 N -0.615 5.615 18 C 0.052 3.948 19 C 0.039 3.961 20 O -0.386 6.386 21 C 0.049 3.951 22 C 0.076 3.924 23 C -0.088 4.088 24 C -0.129 4.129 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.122 4.122 28 H 0.270 0.730 29 H -0.019 1.019 30 H -0.011 1.011 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.347 0.653 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.045 0.955 39 H 0.131 0.869 40 H 0.045 0.955 41 H 0.129 0.871 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.046 0.954 52 H 0.089 0.911 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.176 -21.411 9.457 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.310 6.310 11 C -0.016 4.016 12 C -0.054 4.054 13 N -0.300 5.300 14 C 0.013 3.987 15 C 0.287 3.713 16 O -0.437 6.437 17 N -0.350 5.350 18 C -0.071 4.071 19 C -0.038 4.038 20 O -0.304 6.304 21 C -0.029 4.029 22 C -0.046 4.046 23 C -0.126 4.126 24 C -0.167 4.167 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.159 4.159 28 H 0.079 0.921 29 H -0.001 1.001 30 H 0.007 0.993 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.172 0.828 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.149 0.851 40 H 0.063 0.937 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.108 0.892 51 H 0.065 0.935 52 H 0.108 0.892 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.698 -21.282 8.885 24.313 hybrid contribution -0.887 0.127 -0.544 1.048 sum 6.811 -21.155 8.341 23.738 Atomic orbital electron populations 1.70059 1.07708 1.28623 1.50634 1.25910 0.95902 1.03222 0.93973 0.85276 0.78123 0.76908 0.79371 1.19287 1.20086 1.18842 1.21339 0.94076 0.90799 1.52053 0.92078 1.19815 0.88633 0.84800 0.93358 1.87925 1.34549 1.13496 1.95071 1.22471 0.94805 0.84614 0.99753 1.21853 0.94900 0.94906 0.93693 1.60716 1.20849 1.44023 1.04456 1.21364 0.93048 0.84420 0.99884 1.21983 0.79607 0.89152 0.80551 1.90585 1.64499 1.53955 1.34688 1.48311 1.33512 1.25580 1.27564 1.23281 0.97274 0.97177 0.89319 1.23270 0.90387 0.86047 1.04082 1.87969 1.67911 1.34168 1.40401 1.23072 0.94697 0.98112 0.86992 1.22349 0.91342 0.87060 1.03835 1.21328 0.95435 0.99675 0.96181 1.21773 0.97686 0.99144 0.98077 1.21556 0.97677 1.02529 0.93734 1.21506 0.96491 0.96866 1.00165 1.22050 0.99573 1.01402 0.92917 0.92110 1.00099 0.99327 0.93709 0.93558 0.90879 0.93900 0.82769 0.87695 0.87069 0.93649 0.85081 0.93654 0.85306 0.89347 0.89322 0.93613 0.90733 0.91805 0.91032 0.91183 0.91102 0.89188 0.93487 0.89219 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.98 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.55 -32.37 9.43 25.60 0.24 -32.13 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.66 5.69 71.24 0.41 12.06 16 10 O -0.39 -18.90 10.27 -148.98 -1.53 -20.43 16 11 C 0.06 2.24 6.17 71.98 0.44 2.68 16 12 C 0.08 2.33 5.42 86.30 0.47 2.80 16 13 N -0.66 -18.15 6.04 -473.92 -2.86 -21.01 16 14 C 0.11 2.53 0.42 2.78 0.00 2.54 16 15 C 0.50 12.26 3.37 87.66 0.30 12.55 16 16 O -0.56 -17.00 13.08 -3.04 -0.04 -17.04 16 17 N -0.62 -12.04 3.01 -816.54 -2.46 -14.50 16 18 C 0.05 0.79 4.54 86.49 0.39 1.19 16 19 C 0.04 0.65 6.95 72.22 0.50 1.15 16 20 O -0.39 -7.16 10.74 -148.98 -1.60 -8.76 16 21 C 0.05 0.78 6.99 72.08 0.50 1.28 16 22 C 0.08 1.33 6.61 86.35 0.57 1.90 16 23 C -0.09 -2.31 4.28 30.60 0.13 -2.18 16 24 C -0.13 -2.96 5.63 30.60 0.17 -2.79 16 25 C -0.12 -2.10 5.92 30.60 0.18 -1.91 16 26 C -0.11 -1.85 5.70 30.61 0.17 -1.67 16 27 C -0.12 -2.21 4.63 30.61 0.14 -2.07 16 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 29 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 33 H 0.07 2.48 6.69 -2.39 -0.02 2.47 16 34 H 0.04 1.25 6.76 -2.39 -0.02 1.23 16 35 H 0.35 8.40 5.29 -89.69 -0.47 7.92 16 36 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.11 1.73 2.49 -2.39 -0.01 1.73 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.09 1.76 7.13 -2.39 -0.02 1.74 16 43 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.05 1.37 6.61 -2.38 -0.02 1.36 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.07 1.94 5.43 -2.39 -0.01 1.92 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 0.89 7.22 -2.39 -0.02 0.87 16 52 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 53 H 0.09 1.32 4.72 -2.38 -0.01 1.31 16 Total: -1.00 -71.47 393.22 -0.66 -72.13 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.43 Total: 22.38 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 5.09 Total: -3.66 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -5.04 Total: -90.86 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -3.17 Total: -46.23 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -71.47 -0.66 -72.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934055371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.989 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds