Wall clock time and date at job start Sat Apr 11 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99947 * 2 1 4 4 H 1.09000 * 110.63915 * 26.85909 * 3 2 1 5 5 C 1.54328 * 110.72120 * 263.52382 * 3 2 1 6 6 N 1.47021 * 107.26971 * 219.44427 * 5 3 2 7 7 C 1.36940 * 125.64974 * 178.92019 * 6 5 3 8 8 H 1.07999 * 120.00102 * 180.02562 * 7 6 5 9 9 C 1.38812 * 119.99563 * 0.02562 * 7 6 5 10 10 N 1.31617 * 120.00220 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99720 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47383 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47148 * 119.99885 * 11 9 7 14 14 H 1.48507 * 109.47081 * 239.99592 * 11 9 7 15 15 C 1.47426 * 108.70493 * 358.93663 * 6 5 3 16 16 C 1.54910 * 104.83137 * 24.12868 * 15 6 5 17 17 H 1.09002 * 111.03313 * 81.08132 * 16 15 6 18 18 N 1.46501 * 111.00300 * 204.91365 * 16 15 6 19 19 C 1.34772 * 120.00291 * 267.19439 * 18 16 15 20 20 O 1.21284 * 119.99677 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00192 * 180.02562 * 19 18 16 22 22 C 1.53003 * 109.47113 * 180.02562 * 21 19 18 23 23 H 1.08993 * 109.48997 * 55.02477 * 22 21 19 24 24 C 1.53093 * 109.48088 * 175.06014 * 22 21 19 25 25 C 1.53172 * 109.16509 * 177.59048 * 24 22 21 26 26 C 1.53183 * 109.03276 * 303.01635 * 25 24 22 27 27 C 1.52997 * 109.52231 * 297.07275 * 26 25 24 28 28 C 1.53001 * 109.56929 * 176.91741 * 26 25 24 29 29 C 1.53093 * 109.16424 * 56.98225 * 26 25 24 30 30 O 1.42896 * 109.41541 * 302.38992 * 29 26 25 31 31 H 1.09004 * 109.47421 * 299.99725 * 1 2 3 32 32 H 1.09001 * 109.47216 * 60.00068 * 1 2 3 33 33 H 1.09002 * 109.47048 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.87946 * 338.85530 * 5 3 2 35 35 H 1.08996 * 109.88184 * 100.02120 * 5 3 2 36 36 H 0.97000 * 120.00483 * 180.02562 * 10 9 7 37 37 H 1.08998 * 110.36761 * 265.29295 * 15 6 5 38 38 H 1.08992 * 110.36755 * 142.97128 * 15 6 5 39 39 H 0.97001 * 119.99683 * 87.20116 * 18 16 15 40 40 H 1.08999 * 109.47043 * 60.00123 * 21 19 18 41 41 H 1.08998 * 109.46984 * 299.99986 * 21 19 18 42 42 H 1.09009 * 109.51793 * 297.49402 * 24 22 21 43 43 H 1.08998 * 109.52060 * 57.67748 * 24 22 21 44 44 H 1.08991 * 109.54485 * 183.15090 * 25 24 22 45 45 H 1.09002 * 109.54159 * 62.87873 * 25 24 22 46 46 H 1.09002 * 109.47153 * 179.68689 * 27 26 25 47 47 H 1.09001 * 109.46832 * 59.68880 * 27 26 25 48 48 H 1.09004 * 109.47261 * 299.68861 * 27 26 25 49 49 H 1.08999 * 109.47031 * 180.15755 * 28 26 25 50 50 H 1.09004 * 109.47284 * 300.15594 * 28 26 25 51 51 H 1.09001 * 109.47316 * 60.15933 * 28 26 25 52 52 H 1.09002 * 109.47992 * 62.37542 * 29 26 25 53 53 H 1.08999 * 109.47824 * 182.40465 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0266 0.4609 5 6 2.3810 1.7381 -1.4342 6 7 3.6684 2.4440 -1.3581 7 6 4.3545 2.9695 -2.4203 8 1 5.2971 3.4716 -2.2593 9 6 3.8384 2.8570 -3.7040 10 7 2.6900 2.2447 -3.9003 11 14 4.7746 3.5733 -5.1531 12 1 6.0285 4.2046 -4.6691 13 1 5.1042 2.4899 -6.1138 14 1 3.9350 4.5953 -5.8285 15 6 4.0987 2.4919 0.0512 16 6 3.3815 1.2959 0.7256 17 1 3.9155 0.3640 0.5396 18 7 3.2167 1.5253 2.1632 19 6 4.1461 1.0741 3.0285 20 8 5.1193 0.4785 2.6172 21 6 3.9763 1.3096 4.5073 22 6 5.1617 0.7020 5.2600 23 1 6.0918 1.1057 4.8602 24 6 5.0530 1.0470 6.7476 25 6 6.2096 0.3853 7.5031 26 6 6.1707 -1.1253 7.2523 27 6 4.8710 -1.7038 7.8155 28 6 7.3658 -1.7897 7.9389 29 6 6.2362 -1.3865 5.7453 30 8 5.1507 -0.7181 5.0997 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.4769 0.8602 -2.0731 35 1 1.6152 2.4052 -1.8299 36 1 2.3295 2.1658 -4.7973 37 1 3.7870 3.4296 0.5113 38 1 5.1800 2.3747 0.1218 39 1 2.4385 2.0019 2.4921 40 1 3.0520 0.8415 4.8460 41 1 3.9335 2.3812 4.7020 42 1 5.1056 2.1283 6.8755 43 1 4.1045 0.6788 7.1385 44 1 6.1069 0.5805 8.5704 45 1 7.1568 0.7899 7.1464 46 1 4.8417 -2.7778 7.6317 47 1 4.0202 -1.2283 7.3274 48 1 4.8252 -1.5174 8.8885 49 1 7.3381 -2.8641 7.7571 50 1 8.2912 -1.3770 7.5371 51 1 7.3195 -1.6014 9.0115 52 1 7.1806 -1.0101 5.3519 53 1 6.1659 -2.4581 5.5587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081958591.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:32 Heat of formation + Delta-G solvation = -136.541643 kcal Electronic energy + Delta-G solvation = -31057.624148 eV Core-core repulsion = 26928.741000 eV Total energy + Delta-G solvation = -4128.883149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31457 -40.59728 -39.47899 -37.51117 -36.25179 -35.51850 -34.17628 -33.60342 -31.05167 -30.23990 -28.75639 -28.15191 -27.52503 -26.94168 -26.13121 -25.03971 -22.81225 -22.24110 -21.95341 -21.23402 -19.79578 -19.13451 -18.12142 -17.73450 -17.40988 -17.22853 -16.77070 -16.34514 -15.95326 -15.87962 -15.81508 -15.79846 -15.35271 -15.07620 -15.04194 -14.61822 -14.56193 -14.06893 -13.88021 -13.61673 -13.49739 -13.29356 -13.02825 -13.01484 -12.84741 -12.80519 -12.77286 -12.72735 -12.58139 -12.40760 -12.30449 -12.04308 -11.91638 -11.88202 -11.73934 -11.63291 -11.33245 -11.08764 -10.87922 -10.79278 -10.54287 -10.18258 -10.01288 -8.97670 -7.88538 -5.26862 1.44412 1.46468 1.56759 1.76222 2.12392 2.46030 2.78731 2.90367 3.30765 3.54810 3.66015 3.71053 3.81822 3.86121 3.89985 3.93528 4.06280 4.09143 4.20850 4.31287 4.41150 4.43669 4.46627 4.58418 4.60425 4.64807 4.66200 4.69669 4.75582 4.81865 4.83088 4.85839 4.87110 4.91867 4.97316 5.03450 5.06341 5.09617 5.16264 5.26725 5.33122 5.33675 5.37807 5.42118 5.52146 5.57389 5.64860 6.12571 6.32818 6.40617 6.65211 7.03605 7.38912 7.68744 8.31477 9.21193 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.002344 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.218257 B =11943.180019 C =12822.452697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.076 3.924 4 H 0.099 0.901 5 C 0.175 3.825 6 N -0.623 5.623 7 C -0.245 4.245 8 H 0.083 0.917 9 C -0.064 4.064 10 N -0.950 5.950 11 Si 0.982 3.018 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.286 1.286 15 C 0.132 3.868 16 C 0.151 3.849 17 H 0.067 0.933 18 N -0.705 5.705 19 C 0.508 3.492 20 O -0.579 6.579 21 C -0.123 4.123 22 C 0.100 3.900 23 H 0.041 0.959 24 C -0.143 4.143 25 C -0.111 4.111 26 C -0.099 4.099 27 C -0.133 4.133 28 C -0.138 4.138 29 C 0.069 3.931 30 O -0.389 6.389 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.098 0.902 34 H 0.014 0.986 35 H 0.023 0.977 36 H 0.249 0.751 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.416 0.584 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.055 0.945 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.070 0.930 52 H 0.036 0.964 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 -2.537 28.682 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C 0.017 3.983 4 H 0.117 0.883 5 C 0.049 3.951 6 N -0.351 5.351 7 C -0.374 4.374 8 H 0.101 0.899 9 C -0.258 4.258 10 N -0.598 5.598 11 Si 0.810 3.190 12 H -0.190 1.190 13 H -0.220 1.220 14 H -0.213 1.213 15 C 0.006 3.994 16 C 0.043 3.957 17 H 0.085 0.915 18 N -0.358 5.358 19 C 0.297 3.703 20 O -0.458 6.458 21 C -0.163 4.163 22 C 0.042 3.958 23 H 0.059 0.941 24 C -0.181 4.181 25 C -0.148 4.148 26 C -0.099 4.099 27 C -0.190 4.190 28 C -0.195 4.195 29 C -0.008 4.008 30 O -0.309 6.309 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.033 0.967 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.254 0.746 40 H 0.141 0.859 41 H 0.162 0.838 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.089 0.911 52 H 0.054 0.946 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.338 -3.212 28.097 28.282 hybrid contribution 0.237 0.514 -1.449 1.555 sum -0.102 -2.698 26.648 26.784 Atomic orbital electron populations 1.22989 0.79311 1.03830 1.00810 1.87903 1.21817 1.27197 1.94928 1.23523 0.93761 0.85195 0.95828 0.88306 1.21280 0.87183 0.94588 0.92028 1.44554 1.22027 1.66365 1.02123 1.19488 1.02637 1.29382 0.85877 0.89914 1.25704 0.98500 1.01499 1.00049 1.70173 1.20608 1.48414 1.20638 0.84957 0.77976 0.77229 0.78825 1.19031 1.22025 1.21308 1.21929 0.97064 0.95889 0.84551 1.21754 0.95387 0.98013 0.80512 0.91490 1.45720 1.26203 1.59010 1.04848 1.21401 0.81712 0.77162 0.90060 1.90717 1.32107 1.42327 1.80627 1.21834 1.01227 1.05191 0.88010 1.21890 0.97175 0.81539 0.95209 0.94099 1.22231 1.00359 1.02319 0.93172 1.21670 0.98340 0.93451 1.01368 1.21197 0.97352 0.96626 0.94763 1.21778 0.96153 1.00303 1.00766 1.21780 0.96417 1.00431 1.00903 1.22654 0.89157 0.97209 0.91747 1.87945 1.48519 1.19303 1.75093 0.91533 0.94618 0.88314 0.96745 0.95875 0.94203 0.93596 0.94985 0.74613 0.85922 0.83826 0.88793 0.89728 0.89699 0.92322 0.93178 0.92551 0.91514 0.92400 0.92806 0.91121 0.94611 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.85 113.37 1.23 1.95 16 2 O -0.40 -15.02 10.43 -148.98 -1.55 -16.58 16 3 C 0.08 2.91 3.10 31.78 0.10 3.01 16 4 H 0.10 3.05 7.68 -2.39 -0.02 3.03 16 5 C 0.18 8.96 5.15 86.73 0.45 9.41 16 6 N -0.62 -33.53 3.39 -692.00 -2.35 -35.88 16 7 C -0.25 -14.27 10.28 84.03 0.86 -13.41 16 8 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 9 C -0.06 -3.76 5.49 84.86 0.47 -3.30 16 10 N -0.95 -58.25 10.31 21.65 0.22 -58.03 16 11 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 14 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 15 C 0.13 5.80 6.93 86.86 0.60 6.40 16 16 C 0.15 5.82 3.15 46.38 0.15 5.97 16 17 H 0.07 3.15 7.54 -2.39 -0.02 3.13 16 18 N -0.71 -19.61 5.20 -435.96 -2.27 -21.87 16 19 C 0.51 14.91 7.71 87.66 0.68 15.59 16 20 O -0.58 -23.54 15.06 10.74 0.16 -23.38 16 21 C -0.12 -2.17 5.41 29.85 0.16 -2.01 16 22 C 0.10 2.05 2.19 30.63 0.07 2.12 16 23 H 0.04 1.02 7.96 -2.39 -0.02 1.00 16 24 C -0.14 -1.82 5.05 30.68 0.16 -1.67 16 25 C -0.11 -1.42 4.81 30.71 0.15 -1.27 16 26 C -0.10 -1.47 0.78 -52.09 -0.04 -1.51 16 27 C -0.13 -1.81 8.08 71.98 0.58 -1.23 16 28 C -0.14 -1.67 8.49 71.98 0.61 -1.06 16 29 C 0.07 1.49 5.54 72.01 0.40 1.89 16 30 O -0.39 -10.20 9.06 -135.20 -1.23 -11.42 16 31 H 0.07 1.37 8.11 -2.38 -0.02 1.35 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.01 0.86 7.30 -2.39 -0.02 0.84 16 35 H 0.02 1.27 7.51 -2.39 -0.02 1.26 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.42 7.95 8.57 -92.71 -0.79 7.15 16 40 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.08 0.95 6.62 -2.39 -0.02 0.94 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.86 6.13 -2.39 -0.01 0.85 16 48 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -80.32 411.14 1.71 -78.61 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.08 Total: 18.75 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 6.61 Total: 20.88 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -4.39 Total: -115.78 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -2.62 Total: -51.38 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -80.32 1.71 -78.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081958591.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.930 kcal (2) G-P(sol) polarization free energy of solvation -80.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds