Wall clock time and date at job start Sat Apr 11 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48500 * 109.47322 * 239.99968 * 3 2 1 5 5 H 1.48504 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46825 * 120.00104 * 3 2 1 7 7 C 1.38814 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99722 * 159.69886 * 7 2 1 9 9 N 1.36929 * 120.00315 * 339.70914 * 7 2 1 10 10 C 1.46505 * 119.99855 * 322.21826 * 9 7 2 11 11 C 1.52994 * 109.47082 * 264.41162 * 10 9 7 12 12 O 1.42899 * 109.47101 * 65.00207 * 11 10 9 13 13 C 1.46504 * 120.00498 * 142.21640 * 9 7 2 14 14 C 1.53039 * 109.45695 * 59.99895 * 13 9 7 15 15 C 1.53194 * 109.31342 * 178.61368 * 14 13 9 16 16 N 1.46924 * 108.77091 * 54.63900 * 15 14 13 17 17 C 1.34781 * 120.63002 * 126.11772 * 16 15 14 18 18 O 1.21278 * 119.99899 * 356.85113 * 17 16 15 19 19 C 1.50701 * 119.99707 * 176.85358 * 17 16 15 20 20 H 1.09004 * 108.94757 * 50.38992 * 19 17 16 21 21 C 1.46289 * 108.96057 * 169.14631 * 19 17 16 22 22 C 1.54199 * 112.07841 * 181.55836 * 21 19 17 23 23 C 1.50411 * 108.76843 * 282.19263 * 22 21 19 24 24 O 1.44187 * 112.77357 * 92.57706 * 23 22 21 25 25 C 1.44188 * 116.92760 * 318.47459 * 24 23 22 26 26 C 1.50481 * 112.70172 * 318.47109 * 25 24 23 27 27 C 1.46926 * 118.74046 * 306.39102 * 16 15 14 28 28 C 1.53038 * 109.45839 * 299.93690 * 13 9 7 29 29 H 0.97003 * 119.99824 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47133 * 24.41518 * 10 9 7 31 31 H 1.09002 * 109.47006 * 144.41332 * 10 9 7 32 32 H 1.09002 * 109.47037 * 184.99759 * 11 10 9 33 33 H 1.09001 * 109.47638 * 304.99957 * 11 10 9 34 34 H 0.96702 * 114.00086 * 180.02562 * 12 11 10 35 35 H 1.08992 * 109.46436 * 179.97438 * 13 9 7 36 36 H 1.09002 * 109.49415 * 58.66316 * 14 13 9 37 37 H 1.09002 * 109.52574 * 298.58749 * 14 13 9 38 38 H 1.08994 * 109.58619 * 294.85108 * 15 14 13 39 39 H 1.09006 * 109.70441 * 174.49118 * 15 14 13 40 40 H 1.08996 * 108.96183 * 302.23518 * 21 19 17 41 41 H 1.09004 * 108.95638 * 60.98222 * 21 19 17 42 42 H 1.09002 * 109.58555 * 41.97478 * 22 21 19 43 43 H 1.08992 * 109.59180 * 162.40403 * 22 21 19 44 44 H 1.09007 * 108.81951 * 213.42160 * 23 22 21 45 45 H 1.08994 * 108.82382 * 331.72529 * 23 22 21 46 46 H 1.08998 * 108.81862 * 79.32714 * 25 24 23 47 47 H 1.09007 * 108.81945 * 197.62903 * 25 24 23 48 48 H 1.08997 * 109.66508 * 332.86289 * 26 25 24 49 49 H 1.08998 * 109.53851 * 212.42358 * 26 25 24 50 50 H 1.09001 * 109.59108 * 173.39901 * 27 16 15 51 51 H 1.09005 * 109.58670 * 293.82399 * 27 16 15 52 52 H 1.09003 * 109.49944 * 301.32896 * 28 13 9 53 53 H 1.09004 * 109.50313 * 61.42787 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0399 -1.2314 -0.3240 9 7 1.3893 -2.3511 0.4123 10 6 0.4491 -2.3135 1.5352 11 6 1.1791 -2.6949 2.8245 12 8 2.1654 -1.7052 3.1240 13 6 1.6650 -3.6178 -0.2701 14 6 3.1563 -3.9429 -0.1584 15 6 3.4350 -5.2848 -0.8429 16 7 2.9320 -5.2255 -2.2221 17 6 3.7392 -5.5193 -3.2606 18 8 4.9074 -5.7806 -3.0657 19 6 3.1902 -5.5230 -4.6641 20 1 2.6529 -4.5904 -4.8364 21 6 4.3029 -5.6120 -5.6096 22 6 3.8225 -5.5824 -7.0745 23 6 3.2814 -6.9390 -7.4339 24 8 1.8599 -7.0478 -7.2185 25 6 1.3345 -6.4536 -6.0144 26 6 2.2083 -6.7024 -4.8149 27 6 1.5340 -4.8340 -2.4480 28 6 1.2766 -3.4973 -1.7454 29 1 -0.4850 0.8401 0.0004 30 1 0.0400 -1.3080 1.6331 31 1 -0.3614 -3.0195 1.3542 32 1 0.4627 -2.7535 3.6440 33 1 1.6633 -3.6629 2.6953 34 1 2.6687 -1.8828 3.9304 35 1 1.0840 -4.4145 0.1943 36 1 3.4373 -4.0054 0.8929 37 1 3.7374 -3.1590 -0.6442 38 1 2.9266 -6.0832 -0.3024 39 1 4.5081 -5.4762 -0.8532 40 1 4.9786 -4.7735 -5.4413 41 1 4.8431 -6.5424 -5.4341 42 1 3.0376 -4.8344 -7.1866 43 1 4.6593 -5.3377 -7.7286 44 1 3.4939 -7.1352 -8.4849 45 1 3.7874 -7.6911 -6.8286 46 1 1.2406 -5.3781 -6.1651 47 1 0.3446 -6.8672 -5.8211 48 1 2.7672 -7.6278 -4.9538 49 1 1.5883 -6.7783 -3.9217 50 1 1.3530 -4.7256 -3.5174 51 1 0.8705 -5.5957 -2.0384 52 1 0.2196 -3.2427 -1.8238 53 1 1.8749 -2.7175 -2.2167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098355538.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:54 Heat of formation + Delta-G solvation = -132.855819 kcal Electronic energy + Delta-G solvation = -32181.298989 eV Core-core repulsion = 28052.575670 eV Total energy + Delta-G solvation = -4128.723319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84777 -39.91712 -38.96219 -37.67752 -36.25355 -35.74259 -33.95421 -33.28298 -31.97897 -31.87813 -29.46494 -28.70306 -26.90246 -26.26687 -24.80547 -24.09859 -22.83116 -21.97527 -21.46038 -21.20101 -20.06139 -18.66685 -18.18996 -17.92685 -17.56505 -17.38009 -16.78304 -16.53948 -16.31140 -16.07288 -15.61461 -15.49263 -15.17958 -14.86367 -14.77936 -14.55862 -14.36458 -14.25840 -14.13653 -13.91181 -13.64120 -13.33142 -13.21877 -13.03131 -12.99987 -12.75823 -12.58884 -12.43314 -12.39054 -12.31570 -12.10627 -11.84941 -11.83672 -11.71385 -11.59202 -11.49011 -11.40244 -11.14030 -10.66387 -10.60331 -10.41572 -10.37946 -9.62408 -8.43408 -7.74762 -5.30762 1.42338 1.46402 1.52620 1.56961 2.01767 2.55538 2.89536 3.35444 3.35740 3.56199 3.62478 3.72070 3.83779 3.91385 3.97103 4.06454 4.13673 4.22235 4.25411 4.34880 4.42792 4.46156 4.50034 4.57784 4.59747 4.61707 4.69926 4.70942 4.77272 4.82757 4.83311 4.88145 4.90094 4.94194 5.03690 5.08148 5.11785 5.12390 5.17226 5.20676 5.24012 5.33133 5.47732 5.62326 5.68268 5.75397 5.84785 6.32521 6.43524 6.56137 7.14221 7.19937 7.29864 7.99080 8.47422 9.22326 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003055 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.220199 B = 9163.059618 C = 9712.847598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.027 4.027 3 Si 0.936 3.064 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.035 0.965 9 N -0.584 5.584 10 C 0.141 3.859 11 C 0.066 3.934 12 O -0.578 6.578 13 C 0.173 3.827 14 C -0.124 4.124 15 C 0.120 3.880 16 N -0.604 5.604 17 C 0.512 3.488 18 O -0.588 6.588 19 C -0.099 4.099 20 H 0.104 0.896 21 C -0.106 4.106 22 C -0.144 4.144 23 C 0.060 3.940 24 O -0.412 6.412 25 C 0.063 3.937 26 C -0.137 4.137 27 C 0.114 3.886 28 C -0.126 4.126 29 H 0.246 0.754 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.374 0.626 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.098 0.902 50 H 0.102 0.898 51 H 0.096 0.904 52 H 0.062 0.938 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 -16.117 -8.260 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.767 3.233 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.053 0.947 9 N -0.303 5.303 10 C 0.014 3.986 11 C -0.014 4.014 12 O -0.383 6.383 13 C 0.067 3.933 14 C -0.164 4.164 15 C -0.003 4.003 16 N -0.335 5.335 17 C 0.302 3.698 18 O -0.469 6.469 19 C -0.120 4.120 20 H 0.122 0.878 21 C -0.144 4.144 22 C -0.182 4.182 23 C -0.016 4.016 24 O -0.332 6.332 25 C -0.013 4.013 26 C -0.175 4.175 27 C -0.009 4.009 28 C -0.166 4.166 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.220 0.780 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.126 0.874 48 H 0.095 0.905 49 H 0.116 0.884 50 H 0.120 0.880 51 H 0.114 0.886 52 H 0.081 0.919 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.091 -15.933 -8.823 18.245 hybrid contribution 1.076 1.537 1.192 2.222 sum 2.167 -14.396 -7.631 16.437 Atomic orbital electron populations 1.70052 1.06088 1.25315 1.54670 1.25457 0.95462 1.00273 1.01118 0.85845 0.78232 0.81671 0.77592 1.20944 1.21913 1.21711 1.18654 0.92330 0.86624 1.37835 0.94735 1.43839 1.50324 1.03567 1.32584 1.20951 0.90792 1.01637 0.85188 1.22936 0.90310 0.90179 0.97947 1.86774 1.53505 1.50216 1.47807 1.20506 0.93144 0.88050 0.91625 1.22153 0.98931 0.95697 0.99655 1.21560 1.00112 0.97316 0.81275 1.48237 1.12690 1.66308 1.06274 1.21219 0.85340 0.75382 0.87904 1.90637 1.18416 1.51651 1.86233 1.20501 0.98934 1.02074 0.90512 0.87849 1.20463 0.96757 1.02844 0.94360 1.21885 1.02473 0.98540 0.95271 1.22413 0.80812 0.96150 1.02197 1.88230 1.23380 1.79668 1.41965 1.22410 0.97239 0.98716 0.82966 1.21982 0.97726 0.96932 1.00820 1.22044 0.80602 0.96123 1.02102 1.22142 1.00928 0.96154 0.97367 0.94461 0.92075 0.93125 0.93647 0.94210 0.77987 0.91207 0.91853 0.95169 0.89254 0.91028 0.92818 0.91832 0.90461 0.88729 0.88142 0.93217 0.92294 0.87401 0.90524 0.88403 0.88035 0.88571 0.91944 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.37 11.50 21.65 0.25 -52.12 16 2 C -0.03 -1.47 4.92 84.86 0.42 -1.06 16 3 Si 0.94 46.38 29.60 68.60 2.03 48.41 16 4 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 7 C -0.22 -11.96 8.02 84.04 0.67 -11.29 16 8 H 0.04 1.97 6.89 -2.91 -0.02 1.95 16 9 N -0.58 -26.74 2.32 -677.89 -1.57 -28.32 16 10 C 0.14 6.17 5.56 86.38 0.48 6.65 16 11 C 0.07 2.38 7.39 71.98 0.53 2.91 16 12 O -0.58 -23.26 13.40 -148.98 -2.00 -25.26 16 13 C 0.17 6.30 2.59 45.02 0.12 6.42 16 14 C -0.12 -4.34 5.30 30.67 0.16 -4.18 16 15 C 0.12 3.44 6.44 86.36 0.56 4.00 16 16 N -0.60 -16.36 2.95 -818.89 -2.42 -18.78 16 17 C 0.51 14.66 6.88 87.66 0.60 15.26 16 18 O -0.59 -21.31 15.27 -3.02 -0.05 -21.35 16 19 C -0.10 -2.09 1.28 -13.20 -0.02 -2.10 16 20 H 0.10 2.06 6.40 -2.38 -0.02 2.04 16 21 C -0.11 -2.23 3.91 28.93 0.11 -2.12 16 22 C -0.14 -2.26 5.61 30.16 0.17 -2.09 16 23 C 0.06 0.94 6.26 71.14 0.45 1.38 16 24 O -0.41 -7.73 10.88 -148.98 -1.62 -9.35 16 25 C 0.06 0.95 6.27 71.17 0.45 1.39 16 26 C -0.14 -2.23 4.35 30.19 0.13 -2.10 16 27 C 0.11 2.65 4.92 86.36 0.43 3.07 16 28 C -0.13 -4.28 5.31 30.67 0.16 -4.11 16 29 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.06 3.24 5.57 -2.39 -0.01 3.22 16 31 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.37 10.63 9.12 -74.06 -0.68 9.96 16 35 H 0.07 2.23 7.87 -2.39 -0.02 2.21 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.03 1.26 7.06 -2.39 -0.02 1.25 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 2.26 6.99 -2.38 -0.02 2.24 16 40 H 0.05 1.31 8.08 -2.39 -0.02 1.29 16 41 H 0.06 1.45 7.31 -2.38 -0.02 1.43 16 42 H 0.08 1.22 7.15 -2.39 -0.02 1.21 16 43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.05 0.79 6.67 -2.39 -0.02 0.78 16 46 H 0.06 0.85 6.67 -2.39 -0.02 0.84 16 47 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.08 1.36 7.14 -2.39 -0.02 1.34 16 49 H 0.10 1.40 6.31 -2.39 -0.02 1.38 16 50 H 0.10 1.93 5.14 -2.39 -0.01 1.91 16 51 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 52 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 53 H 0.03 1.43 7.71 -2.39 -0.02 1.41 16 Total: -1.00 -71.47 393.96 0.28 -71.19 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.23 Total: 23.54 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.42 Total: 12.04 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -3.74 Total: -99.22 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -3.66 Total: -55.96 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -71.47 0.28 -71.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098355538.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.662 kcal (2) G-P(sol) polarization free energy of solvation -71.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds