Wall clock time and date at job start Sat Apr 11 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.49884 * 2 1 4 4 C 1.53049 * 109.49906 * 239.90374 * 2 1 3 5 5 C 1.53036 * 109.53858 * 178.68097 * 4 2 1 6 6 C 1.52769 * 109.38409 * 61.24125 * 5 4 2 7 7 H 1.08996 * 109.43074 * 65.42234 * 6 5 4 8 8 C 1.52991 * 109.50831 * 185.70564 * 6 5 4 9 9 N 1.46498 * 109.46914 * 179.84857 * 8 6 5 10 10 C 1.34785 * 120.00080 * 180.02562 * 9 8 6 11 11 O 1.21276 * 119.99847 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99852 * 180.02562 * 10 9 8 13 13 C 1.53001 * 109.46650 * 179.97438 * 12 10 9 14 14 O 1.42973 * 109.47211 * 294.99758 * 13 12 10 15 15 C 1.43089 * 113.77038 * 181.20958 * 14 13 12 16 16 C 1.53261 * 108.94248 * 57.96878 * 15 14 13 17 17 C 1.53259 * 108.84484 * 305.47607 * 16 15 14 18 18 O 1.42965 * 109.46806 * 175.00163 * 13 12 10 19 19 N 1.46930 * 109.00604 * 305.58685 * 6 5 4 20 20 C 1.36930 * 120.63009 * 233.58328 * 19 6 5 21 21 H 1.08007 * 119.99974 * 29.59770 * 20 19 6 22 22 C 1.38816 * 120.00192 * 209.59743 * 20 19 6 23 23 N 1.31624 * 119.99990 * 197.18300 * 22 20 19 24 24 Si 1.86793 * 119.99857 * 17.17866 * 22 20 19 25 25 H 1.48496 * 109.47251 * 265.52201 * 24 22 20 26 26 H 1.48508 * 109.47238 * 25.52046 * 24 22 20 27 27 H 1.48500 * 109.47105 * 145.51843 * 24 22 20 28 28 C 1.46928 * 118.74065 * 53.30841 * 19 6 5 29 29 H 1.08998 * 109.46690 * 299.93333 * 1 2 3 30 30 H 1.09000 * 109.46844 * 59.93677 * 1 2 3 31 31 H 1.08998 * 109.46526 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47628 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46840 * 300.06248 * 3 2 1 34 34 H 1.08999 * 109.47525 * 60.06139 * 3 2 1 35 35 H 1.09002 * 109.45291 * 298.70329 * 4 2 1 36 36 H 1.08997 * 109.45950 * 58.65735 * 4 2 1 37 37 H 1.08996 * 109.49582 * 181.31449 * 5 4 2 38 38 H 1.08997 * 109.50193 * 301.41398 * 5 4 2 39 39 H 1.09001 * 109.47373 * 299.84452 * 8 6 5 40 40 H 1.08994 * 109.47569 * 59.84959 * 8 6 5 41 41 H 0.97000 * 120.00668 * 0.02562 * 9 8 6 42 42 H 1.08997 * 109.46982 * 299.99301 * 12 10 9 43 43 H 1.08998 * 109.46711 * 59.99897 * 12 10 9 44 44 H 1.08999 * 109.47157 * 54.99941 * 13 12 10 45 45 H 1.09001 * 109.55536 * 298.13425 * 15 14 13 46 46 H 1.09001 * 109.55807 * 177.80637 * 15 14 13 47 47 H 1.09004 * 109.57268 * 185.66672 * 16 15 14 48 48 H 1.08996 * 109.68124 * 65.34922 * 16 15 14 49 49 H 1.09000 * 109.56056 * 294.68524 * 17 16 15 50 50 H 1.09007 * 109.64670 * 174.41851 * 17 16 15 51 51 H 0.97001 * 119.99839 * 359.97438 * 23 22 20 52 52 H 1.09000 * 109.58575 * 66.42541 * 28 19 6 53 53 H 1.09000 * 109.58779 * 186.71532 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0409 -0.7235 -1.2482 5 6 3.5709 -0.6953 -1.2659 6 6 4.1056 -1.4216 -0.0328 7 1 3.8414 -2.4774 -0.0909 8 6 5.6271 -1.2732 0.0277 9 7 6.1386 -1.9669 1.2123 10 6 7.4610 -1.9701 1.4729 11 8 8.2275 -1.3992 0.7263 12 6 7.9872 -2.6842 2.6912 13 6 9.5088 -2.5357 2.7518 14 8 10.0980 -3.2076 1.6358 15 6 11.5276 -3.1495 1.6167 16 6 12.0677 -3.7608 2.9143 17 6 11.4185 -3.0474 4.1053 18 8 9.9958 -3.1120 3.9662 19 7 3.5047 -0.8288 1.1698 20 6 4.2936 -0.3778 2.1941 21 1 5.2862 -0.0053 1.9875 22 6 3.8179 -0.3995 3.4980 23 7 4.4075 0.3244 4.4258 24 14 2.3407 -1.4557 3.9357 25 1 1.1058 -0.6342 3.8630 26 1 2.2399 -2.5868 2.9787 27 1 2.5022 -1.9859 5.3134 28 6 2.0414 -0.7234 1.2498 29 1 -0.3632 0.5128 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1307 1.4418 -0.0005 33 1 1.6767 1.9565 -0.8895 34 1 1.6785 1.9560 0.8905 35 1 1.6967 -1.7576 -1.2348 36 1 1.6582 -0.2252 -2.1389 37 1 3.9334 -1.1903 -2.1668 38 1 3.9160 0.3385 -1.2543 39 1 6.0706 -1.7085 -0.8679 40 1 5.8872 -0.2163 0.0850 41 1 5.5257 -2.4239 1.8093 42 1 7.5435 -2.2497 3.5870 43 1 7.7276 -3.7412 2.6332 44 1 9.7723 -1.4785 2.7200 45 1 11.8497 -2.1109 1.5410 46 1 11.9044 -3.7133 0.7633 47 1 13.1492 -3.6315 2.9564 48 1 11.8253 -4.8229 2.9484 49 1 11.7364 -2.0050 4.1238 50 1 11.7171 -3.5364 5.0326 51 1 5.1748 0.8726 4.1985 52 1 1.6053 -1.7212 1.2985 53 1 1.7638 -0.1594 2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099043865.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:27 Heat of formation + Delta-G solvation = -136.946067 kcal Electronic energy + Delta-G solvation = -32172.742276 eV Core-core repulsion = 28043.841590 eV Total energy + Delta-G solvation = -4128.900686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32836 -40.70930 -39.89872 -36.79032 -36.64805 -35.02672 -34.25404 -33.74615 -32.42574 -31.34422 -28.85493 -28.10421 -26.99781 -26.95560 -25.56298 -24.31145 -23.77531 -22.15309 -21.56781 -21.06537 -20.09301 -18.97017 -18.55627 -17.82078 -17.61049 -17.12661 -16.84871 -16.73553 -16.36919 -15.83413 -15.79028 -15.74698 -15.61070 -15.10610 -14.92475 -14.78795 -14.34098 -14.31694 -14.11234 -13.95583 -13.90690 -13.51064 -13.37161 -12.95478 -12.87055 -12.80591 -12.43910 -12.43268 -12.33871 -12.17323 -12.12387 -12.09357 -12.01886 -11.61828 -11.35428 -11.26152 -11.06099 -11.01472 -10.95157 -10.79574 -10.71194 -10.50638 -9.86248 -8.86827 -8.33056 -5.37630 1.49593 1.59142 1.69670 1.76370 2.06366 2.60443 2.63694 2.83954 3.19320 3.40999 3.68330 3.75094 3.76311 3.82768 3.88728 3.93259 4.05681 4.11290 4.20371 4.23727 4.34692 4.38120 4.41543 4.44379 4.50763 4.55982 4.64473 4.69806 4.73677 4.78017 4.82383 4.83631 4.86269 4.94658 4.97999 5.02616 5.08514 5.09301 5.10680 5.17926 5.27189 5.43736 5.45846 5.54020 5.63158 5.73028 5.80258 6.02890 6.12239 6.36974 6.68008 7.04496 7.32395 7.69215 8.22815 9.02751 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.003228 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.379884 B = 8673.195227 C = 9804.615077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.090 4.090 5 C -0.127 4.127 6 C 0.163 3.837 7 H 0.052 0.948 8 C 0.144 3.856 9 N -0.692 5.692 10 C 0.515 3.485 11 O -0.586 6.586 12 C -0.122 4.122 13 C 0.274 3.726 14 O -0.400 6.400 15 C 0.045 3.955 16 C -0.182 4.182 17 C 0.044 3.956 18 O -0.409 6.409 19 N -0.611 5.611 20 C -0.297 4.297 21 H 0.044 0.956 22 C -0.064 4.064 23 N -0.962 5.962 24 Si 1.094 2.906 25 H -0.292 1.292 26 H -0.253 1.253 27 H -0.319 1.319 28 C 0.131 3.869 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.411 0.589 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.122 0.878 51 H 0.243 0.757 52 H 0.038 0.962 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -8.500 -8.444 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 C -0.178 4.178 4 C -0.128 4.128 5 C -0.167 4.167 6 C 0.057 3.943 7 H 0.069 0.931 8 C 0.019 3.981 9 N -0.342 5.342 10 C 0.302 3.698 11 O -0.467 6.467 12 C -0.162 4.162 13 C 0.178 3.822 14 O -0.321 6.321 15 C -0.031 4.031 16 C -0.219 4.219 17 C -0.031 4.031 18 O -0.330 6.330 19 N -0.336 5.336 20 C -0.427 4.427 21 H 0.062 0.938 22 C -0.258 4.258 23 N -0.606 5.606 24 Si 0.923 3.077 25 H -0.220 1.220 26 H -0.177 1.177 27 H -0.249 1.249 28 C 0.007 3.993 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.248 0.752 42 H 0.131 0.869 43 H 0.141 0.859 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.099 0.901 49 H 0.076 0.924 50 H 0.140 0.860 51 H 0.052 0.948 52 H 0.056 0.944 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.989 -8.740 -7.775 12.359 hybrid contribution 1.347 1.280 -0.313 1.884 sum 5.336 -7.460 -8.088 12.229 Atomic orbital electron populations 1.21794 0.93385 1.02258 1.01868 1.21035 0.95850 0.95511 0.96287 1.21655 1.00531 0.95636 1.00024 1.21404 0.94310 1.00476 0.96587 1.21894 0.96871 1.00593 0.97310 1.20821 0.89727 0.96089 0.87637 0.93075 1.21192 0.94156 0.95582 0.87128 1.45902 1.06667 1.53966 1.27683 1.20412 0.82562 0.80307 0.86531 1.90621 1.57573 1.47350 1.51193 1.21381 0.92770 1.04284 0.97746 1.22593 0.91445 0.92263 0.75875 1.88132 1.21485 1.76761 1.45751 1.22909 0.79592 1.00985 0.99656 1.22748 1.03031 1.01514 0.94635 1.22991 0.78900 1.00862 1.00389 1.88055 1.23928 1.81881 1.39177 1.44460 1.01133 1.70817 1.17199 1.20036 0.99329 1.36584 0.86767 0.93820 1.27008 1.05716 1.01069 0.92044 1.71009 1.23449 1.29299 1.36817 0.83423 0.73506 0.76534 0.74271 1.21999 1.17724 1.24910 1.21527 0.83788 0.97355 0.96656 0.93788 0.91004 0.91754 0.94138 0.91857 0.95373 0.91327 0.90520 0.89907 0.92984 0.91038 0.95065 0.75201 0.86869 0.85924 0.93705 0.93013 0.86829 0.86675 0.90088 0.92387 0.86004 0.94769 0.94445 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.48 71.98 0.61 -2.74 16 2 C -0.09 -2.59 0.77 -52.10 -0.04 -2.63 16 3 C -0.12 -4.02 7.99 71.98 0.57 -3.45 16 4 C -0.09 -2.29 4.71 30.62 0.14 -2.15 16 5 C -0.13 -3.61 5.00 30.53 0.15 -3.46 16 6 C 0.16 5.58 2.99 44.83 0.13 5.72 16 7 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 8 C 0.14 5.35 4.42 86.38 0.38 5.73 16 9 N -0.69 -26.70 3.82 -463.07 -1.77 -28.47 16 10 C 0.52 20.55 7.71 87.66 0.68 21.22 16 11 O -0.59 -26.63 15.42 10.76 0.17 -26.47 16 12 C -0.12 -4.19 5.78 29.85 0.17 -4.02 16 13 C 0.27 9.17 2.80 71.98 0.20 9.37 16 14 O -0.40 -13.15 9.77 -120.75 -1.18 -14.33 16 15 C 0.04 1.04 6.96 72.07 0.50 1.54 16 16 C -0.18 -3.24 6.35 30.77 0.20 -3.04 16 17 C 0.04 0.94 6.96 72.07 0.50 1.44 16 18 O -0.41 -12.37 10.54 -126.22 -1.33 -13.70 16 19 N -0.61 -25.25 2.18 -676.01 -1.48 -26.73 16 20 C -0.30 -14.94 7.36 84.04 0.62 -14.32 16 21 H 0.04 2.49 5.97 -2.91 -0.02 2.47 16 22 C -0.06 -3.47 5.28 84.86 0.45 -3.02 16 23 N -0.96 -58.62 13.71 21.65 0.30 -58.33 16 24 Si 1.09 50.35 24.70 68.60 1.69 52.05 16 25 H -0.29 -13.08 6.74 99.48 0.67 -12.41 16 26 H -0.25 -10.27 6.32 99.48 0.63 -9.64 16 27 H -0.32 -15.48 7.11 99.48 0.71 -14.78 16 28 C 0.13 5.03 2.86 86.36 0.25 5.27 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.55 5.97 -2.39 -0.01 1.54 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.65 6.34 -2.39 -0.02 1.64 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.03 1.37 7.42 -2.39 -0.02 1.35 16 41 H 0.41 15.83 7.40 -92.71 -0.69 15.15 16 42 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 43 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 44 H 0.05 1.64 7.96 -2.39 -0.02 1.62 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 51 H 0.24 15.26 8.73 -92.71 -0.81 14.45 16 52 H 0.04 1.37 6.85 -2.39 -0.02 1.35 16 53 H 0.04 1.89 4.62 -2.39 -0.01 1.88 16 Total: -1.00 -69.20 394.54 1.97 -67.23 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: 0.05 Total: 37.27 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.52 Total: 11.48 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -2.95 Total: -113.53 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -2.34 Total: -54.49 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 1.69 Total: 52.05 kcal Total: -69.20 1.97 -67.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099043865.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.715 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds