Wall clock time and date at job start Sat Apr 11 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.52794 * 2 1 4 4 C 1.53044 * 109.49683 * 120.08312 * 2 1 3 5 5 C 1.53034 * 109.54064 * 58.58256 * 4 2 1 6 6 C 1.53195 * 109.31204 * 61.36577 * 5 4 2 7 7 H 1.09006 * 109.58789 * 65.29679 * 6 5 4 8 8 C 1.52997 * 109.58909 * 185.57783 * 6 5 4 9 9 N 1.46504 * 109.47416 * 180.02562 * 8 6 5 10 10 C 1.34769 * 120.00367 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00080 * 359.71742 * 10 9 8 12 12 C 1.50696 * 120.00466 * 179.97438 * 10 9 8 13 13 O 1.42894 * 109.47534 * 179.97438 * 12 10 9 14 14 C 1.42900 * 114.00304 * 180.02562 * 13 12 10 15 15 H 1.08995 * 110.45621 * 27.39411 * 14 13 12 16 16 C 1.54503 * 110.51481 * 150.00377 * 14 13 12 17 17 C 1.54478 * 104.06675 * 118.64321 * 16 14 13 18 18 O 1.44432 * 104.80179 * 23.97967 * 17 16 14 19 19 C 1.44424 * 105.27302 * 319.48677 * 18 17 16 20 20 N 1.46927 * 108.89636 * 305.43781 * 6 5 4 21 21 C 1.36932 * 120.63300 * 233.53827 * 20 6 5 22 22 H 1.08007 * 119.99894 * 30.75664 * 21 20 6 23 23 C 1.38816 * 120.00089 * 210.75299 * 21 20 6 24 24 N 1.31615 * 119.99875 * 14.33506 * 23 21 20 25 25 Si 1.86804 * 119.99973 * 194.33509 * 23 21 20 26 26 H 1.48504 * 109.47169 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46937 * 119.99728 * 25 23 21 28 28 H 1.48499 * 109.46931 * 240.00200 * 25 23 21 29 29 C 1.46962 * 118.71167 * 53.35357 * 20 6 5 30 30 H 1.08996 * 109.46920 * 299.92247 * 1 2 3 31 31 H 1.09001 * 109.46834 * 59.91918 * 1 2 3 32 32 H 1.08998 * 109.46871 * 179.91833 * 1 2 3 33 33 H 1.08995 * 109.47833 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46769 * 300.08211 * 3 2 1 35 35 H 1.09003 * 109.46895 * 60.07639 * 3 2 1 36 36 H 1.08999 * 109.45455 * 298.56075 * 4 2 1 37 37 H 1.09003 * 109.46042 * 178.60744 * 4 2 1 38 38 H 1.08996 * 109.50089 * 301.41554 * 5 4 2 39 39 H 1.08996 * 109.50147 * 181.31588 * 5 4 2 40 40 H 1.08997 * 109.47042 * 60.06144 * 8 6 5 41 41 H 1.09002 * 109.47162 * 300.06071 * 8 6 5 42 42 H 0.97002 * 119.99366 * 359.97438 * 9 8 6 43 43 H 1.08996 * 109.47239 * 300.00032 * 12 10 9 44 44 H 1.09009 * 109.47273 * 59.99556 * 12 10 9 45 45 H 1.09003 * 110.51166 * 237.29159 * 16 14 13 46 46 H 1.08997 * 110.51375 * 359.85978 * 16 14 13 47 47 H 1.09003 * 110.37350 * 142.80758 * 17 16 14 48 48 H 1.09002 * 110.37358 * 265.14818 * 17 16 14 49 49 H 1.08998 * 110.37520 * 281.68221 * 19 18 17 50 50 H 1.09004 * 110.36944 * 159.34202 * 19 18 17 51 51 H 0.97003 * 120.00069 * 180.02562 * 24 23 21 52 52 H 1.09001 * 109.59171 * 186.78501 * 29 20 6 53 53 H 1.08999 * 109.46667 * 66.43680 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0408 -0.7232 1.2484 5 6 1.5030 -2.1558 1.2661 6 6 2.0139 -2.9040 0.0308 7 1 3.0976 -3.0066 0.0880 8 6 1.3702 -4.2906 -0.0317 9 7 1.8610 -5.0041 -1.2134 10 6 1.4272 -6.2530 -1.4749 11 8 0.6345 -6.7883 -0.7293 12 6 1.9316 -6.9867 -2.6907 13 8 1.3305 -8.2818 -2.7491 14 6 1.7440 -9.0646 -3.8708 15 1 2.7430 -8.7709 -4.1927 16 6 1.7077 -10.5697 -3.5235 17 6 0.6806 -11.1592 -4.5154 18 8 0.6697 -10.2370 -5.6269 19 6 0.7344 -8.9228 -5.0315 20 7 1.6543 -2.1395 -1.1712 21 6 0.9686 -2.7336 -2.1968 22 1 0.2744 -3.5346 -1.9896 23 6 1.1655 -2.3062 -3.5028 24 7 2.1961 -1.5422 -3.7968 25 14 -0.0322 -2.8155 -4.8429 26 1 -1.0969 -3.6690 -4.2570 27 1 -0.6440 -1.6043 -5.4462 28 1 0.6926 -3.5784 -5.8906 29 6 2.0413 -0.7239 -1.2496 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1314 1.4410 -0.0005 34 1 1.6773 1.9565 -0.8893 35 1 1.6797 1.9557 0.8907 36 1 1.6988 -0.1958 2.1389 37 1 3.1305 -0.7445 1.2353 38 1 0.4133 -2.1355 1.2541 39 1 1.8480 -2.6628 2.1671 40 1 0.2871 -4.1858 -0.0950 41 1 1.6290 -4.8522 0.8659 42 1 2.4976 -4.5773 -1.8079 43 1 1.6722 -6.4247 -3.5879 44 1 3.0148 -7.0918 -2.6284 45 1 2.6883 -11.0206 -3.6761 46 1 1.3768 -10.7166 -2.4955 47 1 0.9971 -12.1484 -4.8462 48 1 -0.3059 -11.2099 -4.0547 49 1 -0.2438 -8.6305 -4.6499 50 1 1.0923 -8.1940 -5.7587 51 1 2.3336 -1.2433 -4.7094 52 1 1.6008 -0.2732 -2.1389 53 1 3.1275 -0.6464 -1.2981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099069320.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:30 Heat of formation + Delta-G solvation = -127.266864 kcal Electronic energy + Delta-G solvation = -31708.935118 eV Core-core repulsion = 27580.454154 eV Total energy + Delta-G solvation = -4128.480964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.05224 -40.53375 -39.86758 -37.99325 -36.56314 -34.97715 -33.71832 -32.44692 -31.73094 -30.19847 -29.45381 -28.01106 -27.77440 -27.30430 -24.79482 -23.96904 -23.76343 -22.21629 -21.70761 -21.31456 -19.46001 -18.67124 -18.37057 -17.81769 -17.41133 -17.10288 -16.96852 -16.70507 -16.19547 -15.95050 -15.76399 -15.50003 -15.31854 -15.08376 -14.78453 -14.65994 -14.54349 -14.17304 -13.86937 -13.76892 -13.61165 -13.22668 -13.11334 -12.99580 -12.83334 -12.74363 -12.63874 -12.49390 -12.48634 -12.29195 -12.19351 -12.11006 -11.85468 -11.77819 -11.60688 -11.25320 -11.00676 -10.99044 -10.88388 -10.71535 -10.63816 -10.47254 -9.84479 -8.50061 -7.79287 -5.24681 1.38226 1.47727 1.53046 1.65968 1.89848 2.50260 2.83216 3.14062 3.35264 3.51378 3.61102 3.74435 3.86272 3.92256 4.01682 4.05598 4.16653 4.20237 4.21731 4.27346 4.29796 4.34709 4.44219 4.54722 4.62745 4.66709 4.69959 4.76828 4.77045 4.88118 4.89111 4.94558 4.96720 4.98763 5.07039 5.11507 5.15396 5.18089 5.27260 5.41309 5.49718 5.54891 5.58312 5.61108 5.66885 5.75268 5.83794 5.90790 6.05927 6.48371 6.71485 7.23700 7.33834 7.93288 8.46822 9.24631 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.003086 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.953918 B = 9070.188717 C =10307.030793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.162 3.838 7 H 0.034 0.966 8 C 0.141 3.859 9 N -0.690 5.690 10 C 0.505 3.495 11 O -0.584 6.584 12 C 0.046 3.954 13 O -0.373 6.373 14 C 0.047 3.953 15 H 0.101 0.899 16 C -0.150 4.150 17 C 0.040 3.960 18 O -0.389 6.389 19 C 0.019 3.981 20 N -0.595 5.595 21 C -0.228 4.228 22 H 0.059 0.941 23 C -0.027 4.027 24 N -0.921 5.921 25 Si 0.927 3.073 26 H -0.283 1.283 27 H -0.300 1.300 28 H -0.286 1.286 29 C 0.196 3.804 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.414 0.586 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.087 0.913 47 H 0.119 0.881 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.104 0.896 51 H 0.247 0.753 52 H 0.048 0.952 53 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -7.926 4.688 9.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.186 4.186 4 C -0.128 4.128 5 C -0.165 4.165 6 C 0.056 3.944 7 H 0.051 0.949 8 C 0.017 3.983 9 N -0.342 5.342 10 C 0.292 3.708 11 O -0.465 6.465 12 C -0.034 4.034 13 O -0.292 6.292 14 C -0.011 4.011 15 H 0.119 0.881 16 C -0.187 4.187 17 C -0.036 4.036 18 O -0.308 6.308 19 C -0.058 4.058 20 N -0.319 5.319 21 C -0.358 4.358 22 H 0.077 0.923 23 C -0.224 4.224 24 N -0.567 5.567 25 Si 0.758 3.242 26 H -0.209 1.209 27 H -0.227 1.227 28 H -0.212 1.212 29 C 0.071 3.929 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.251 0.749 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.105 0.895 47 H 0.137 0.863 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.122 0.878 51 H 0.056 0.944 52 H 0.066 0.934 53 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 2.960 -8.378 4.968 10.180 hybrid contribution -0.438 0.485 -1.530 1.664 sum 2.522 -7.893 3.439 8.971 Atomic orbital electron populations 1.21623 0.95125 1.00948 0.99786 1.21160 0.95761 0.95485 0.97032 1.21704 1.00577 0.95032 1.01303 1.21384 0.99725 0.94916 0.96800 1.21958 1.00900 0.96365 0.97259 1.20856 0.96072 0.89205 0.88257 0.94867 1.21246 0.98058 0.91893 0.87068 1.45896 1.46337 1.13859 1.28062 1.20611 0.81358 0.82048 0.86806 1.90640 1.36299 1.68477 1.51117 1.22335 0.99478 0.85092 0.96474 1.88037 1.68740 1.25943 1.46433 1.23785 0.98734 0.92651 0.85894 0.88111 1.23045 1.02081 0.92252 1.01359 1.23614 0.98747 0.94691 0.86511 1.89113 1.95426 1.16111 1.30172 1.23995 0.99466 0.86406 0.95975 1.44185 1.65602 1.06182 1.15919 1.19173 1.15318 1.16052 0.85294 0.92322 1.25364 0.97583 1.01166 0.98290 1.70106 1.28275 1.40152 1.18212 0.85829 0.79982 0.77216 0.81172 1.20884 1.22700 1.21238 1.20586 0.94446 0.83314 0.94588 0.92275 0.95288 0.93529 0.92983 0.94051 0.91399 0.90956 0.92640 0.92286 0.90266 0.93897 0.91038 0.74856 0.89600 0.87076 0.87358 0.89483 0.86316 0.92245 0.92599 0.87835 0.94372 0.93385 0.98577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.94 7.99 71.98 0.57 -3.37 16 2 C -0.09 -3.08 0.77 -52.10 -0.04 -3.12 16 3 C -0.13 -3.69 8.48 71.98 0.61 -3.07 16 4 C -0.09 -2.57 4.71 30.62 0.14 -2.42 16 5 C -0.13 -3.70 5.03 30.67 0.15 -3.54 16 6 C 0.16 5.73 3.00 44.97 0.13 5.86 16 7 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 8 C 0.14 5.05 4.43 86.38 0.38 5.43 16 9 N -0.69 -24.84 3.85 -463.07 -1.78 -26.63 16 10 C 0.51 18.64 7.91 87.66 0.69 19.33 16 11 O -0.58 -25.92 16.50 16.00 0.26 -25.65 16 12 C 0.05 1.32 6.25 71.23 0.45 1.77 16 13 O -0.37 -11.34 9.51 -129.94 -1.24 -12.57 16 14 C 0.05 1.08 3.61 31.61 0.11 1.20 16 15 H 0.10 1.86 7.82 -2.39 -0.02 1.84 16 16 C -0.15 -2.78 6.90 31.61 0.22 -2.56 16 17 C 0.04 0.76 7.63 72.48 0.55 1.31 16 18 O -0.39 -9.67 11.65 -148.98 -1.74 -11.40 16 19 C 0.02 0.47 7.38 72.49 0.53 1.00 16 20 N -0.60 -25.43 2.43 -675.12 -1.64 -27.07 16 21 C -0.23 -10.85 7.01 84.04 0.59 -10.26 16 22 H 0.06 2.94 5.84 -2.91 -0.02 2.92 16 23 C -0.03 -1.38 4.96 84.86 0.42 -0.96 16 24 N -0.92 -48.84 11.24 21.65 0.24 -48.59 16 25 Si 0.93 42.52 29.58 68.60 2.03 44.55 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 29 C 0.20 8.40 3.94 86.36 0.34 8.74 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.73 5.98 -2.39 -0.01 1.72 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.85 6.34 -2.39 -0.02 1.83 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.74 7.40 -2.39 -0.02 1.72 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.41 15.16 7.42 -92.71 -0.69 14.47 16 43 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.11 2.46 8.11 -2.38 -0.02 2.44 16 45 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.09 1.75 8.00 -2.39 -0.02 1.73 16 47 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.06 1.56 8.08 -2.39 -0.02 1.54 16 50 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 51 H 0.25 13.00 8.31 -92.71 -0.77 12.22 16 52 H 0.05 2.41 6.20 -2.39 -0.01 2.40 16 53 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: -1.00 -63.26 405.85 2.21 -61.05 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.20 Total: 30.99 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.87 Total: 15.33 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.18 Total: -102.28 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -2.71 Total: -49.63 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -63.26 2.21 -61.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099069320.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.220 kcal (2) G-P(sol) polarization free energy of solvation -63.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds