Wall clock time and date at job start Sat Apr 11 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.49360 * 2 1 4 4 C 1.53039 * 109.49845 * 120.05965 * 2 1 3 5 5 C 1.53041 * 109.54009 * 181.32103 * 4 2 1 6 6 C 1.53197 * 109.31104 * 298.63751 * 5 4 2 7 7 H 1.09000 * 109.69973 * 294.77964 * 6 5 4 8 8 C 1.52998 * 109.58839 * 174.42155 * 6 5 4 9 9 N 1.46500 * 109.47207 * 180.55083 * 8 6 5 10 10 C 1.34770 * 119.99731 * 179.97438 * 9 8 6 11 11 O 1.21285 * 120.00433 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99933 * 180.02562 * 10 9 8 13 13 O 1.42900 * 109.47294 * 180.02562 * 12 10 9 14 14 C 1.42895 * 113.99923 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.75533 * 29.29431 * 14 13 12 16 16 C 1.55306 * 110.84669 * 152.77131 * 14 13 12 17 17 C 1.55209 * 100.82602 * 152.18178 * 16 14 13 18 18 O 1.43652 * 105.25848 * 323.81127 * 17 16 14 19 19 C 1.43231 * 109.96754 * 24.29116 * 18 17 16 20 20 N 1.46927 * 108.77548 * 54.63323 * 6 5 4 21 21 C 1.36939 * 120.63013 * 126.37254 * 20 6 5 22 22 H 1.07997 * 119.99709 * 328.28156 * 21 20 6 23 23 C 1.38810 * 120.00056 * 148.28158 * 21 20 6 24 24 N 1.31621 * 119.99935 * 347.74766 * 23 21 20 25 25 Si 1.86794 * 119.99988 * 167.75429 * 23 21 20 26 26 H 1.48497 * 109.47367 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47407 * 119.99945 * 25 23 21 28 28 H 1.48503 * 109.46822 * 240.00004 * 25 23 21 29 29 C 1.46921 * 118.73772 * 306.38965 * 20 6 5 30 30 H 1.09000 * 109.47093 * 299.93719 * 1 2 3 31 31 H 1.09000 * 109.46710 * 59.93802 * 1 2 3 32 32 H 1.08995 * 109.46436 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46883 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46840 * 300.06081 * 3 2 1 35 35 H 1.08992 * 109.47688 * 60.06348 * 3 2 1 36 36 H 1.08999 * 109.46227 * 301.34065 * 4 2 1 37 37 H 1.09002 * 109.45845 * 61.30050 * 4 2 1 38 38 H 1.08996 * 109.49987 * 58.58326 * 5 4 2 39 39 H 1.08994 * 109.49906 * 178.68585 * 5 4 2 40 40 H 1.08998 * 109.47096 * 300.55379 * 8 6 5 41 41 H 1.09004 * 109.46904 * 60.55051 * 8 6 5 42 42 H 0.96996 * 119.99827 * 0.02562 * 9 8 6 43 43 H 1.08998 * 109.47023 * 300.00081 * 12 10 9 44 44 H 1.08994 * 109.47307 * 60.00016 * 12 10 9 45 45 H 1.08999 * 111.12502 * 270.23834 * 16 14 13 46 46 H 1.08992 * 111.12697 * 34.40197 * 16 14 13 47 47 H 1.09002 * 110.36876 * 204.80112 * 17 16 14 48 48 H 1.08996 * 110.21697 * 82.75026 * 17 16 14 49 49 H 1.09005 * 109.83156 * 238.77242 * 19 18 17 50 50 H 1.08999 * 109.90974 * 117.84442 * 19 18 17 51 51 H 0.96997 * 120.00196 * 180.02562 * 24 23 21 52 52 H 1.09000 * 109.59453 * 293.82565 * 29 20 6 53 53 H 1.09007 * 109.58522 * 173.39692 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0409 -0.7226 1.2486 5 6 3.5709 -0.6945 1.2663 6 6 4.1054 -1.4265 0.0313 7 1 3.8398 -2.4822 0.0863 8 6 5.6274 -1.2832 -0.0312 9 7 6.1344 -1.9729 -1.2201 10 6 7.4563 -1.9794 -1.4829 11 8 8.2261 -1.4147 -0.7349 12 6 7.9778 -2.6884 -2.7062 13 8 9.3994 -2.5546 -2.7645 14 6 9.9976 -3.1953 -3.8930 15 1 9.3067 -3.2175 -4.7358 16 6 11.3267 -2.4945 -4.2861 17 6 12.0985 -3.6754 -4.9334 18 8 11.7355 -4.8320 -4.1627 19 6 10.4678 -4.6204 -3.5305 20 7 3.5047 -0.8293 -1.1693 21 6 4.2937 -0.3790 -2.1939 22 1 5.2745 0.0215 -1.9843 23 6 3.8329 -0.4374 -3.5020 24 7 2.7551 -1.1361 -3.7895 25 14 4.7424 0.4756 -4.8542 26 1 5.9133 1.1810 -4.2743 27 1 5.2057 -0.4928 -5.8803 28 1 3.8307 1.4649 -5.4832 29 6 2.0415 -0.7242 -1.2493 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1307 1.4419 -0.0005 34 1 1.6766 1.9566 -0.8895 35 1 1.6785 1.9560 0.8905 36 1 1.6582 -0.2238 2.1390 37 1 1.6968 -1.7568 1.2359 38 1 3.9160 0.3394 1.2540 39 1 3.9335 -1.1888 2.1675 40 1 5.8910 -0.2268 -0.0839 41 1 6.0708 -1.7242 0.8615 42 1 5.5187 -2.4242 -1.8185 43 1 7.7146 -3.7448 -2.6537 44 1 7.5341 -2.2473 -3.5987 45 1 11.1512 -1.6945 -5.0053 46 1 11.8492 -2.1210 -3.4055 47 1 13.1733 -3.5038 -4.8746 48 1 11.7923 -3.8013 -5.9718 49 1 10.5741 -4.7108 -2.4494 50 1 9.7454 -5.3516 -3.8932 51 1 2.4333 -1.1772 -4.7036 52 1 1.6054 -1.7220 -1.2974 53 1 1.7639 -0.1586 -2.1389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099069321.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:34 Heat of formation + Delta-G solvation = -127.019984 kcal Electronic energy + Delta-G solvation = -31631.083094 eV Core-core repulsion = 27502.612836 eV Total energy + Delta-G solvation = -4128.470258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05542 -40.53212 -39.87368 -38.04133 -36.56718 -34.97441 -33.72193 -32.51792 -31.72593 -30.27556 -29.49429 -28.00746 -27.79341 -27.30689 -24.79533 -23.80932 -23.46249 -22.57329 -21.71495 -21.30869 -19.45631 -18.67322 -18.48589 -17.89611 -17.30529 -17.28768 -16.99219 -16.59015 -16.16295 -15.91108 -15.72388 -15.53869 -15.29869 -14.92438 -14.90050 -14.67218 -14.50879 -14.26678 -13.92144 -13.75146 -13.53216 -13.34793 -13.11903 -12.99036 -12.85845 -12.75145 -12.67395 -12.49785 -12.48739 -12.48265 -12.19236 -12.10638 -11.85295 -11.78107 -11.60913 -11.24869 -11.00947 -10.88527 -10.78213 -10.72738 -10.55868 -10.47003 -9.84689 -8.48408 -7.78411 -5.25927 1.38473 1.47850 1.53559 1.64978 1.87119 2.50468 2.77460 3.04928 3.35865 3.38187 3.61259 3.80745 3.83273 3.93824 4.01722 4.05854 4.14712 4.15813 4.21943 4.24717 4.28600 4.34715 4.44190 4.54667 4.60629 4.68560 4.70187 4.76725 4.77868 4.88196 4.88609 4.94680 4.96822 4.99551 5.07202 5.11524 5.15453 5.18047 5.27420 5.41777 5.49763 5.55215 5.60203 5.66159 5.75576 5.83991 5.89376 5.91538 5.98729 6.49507 6.70966 7.24177 7.33297 7.93243 8.47207 9.25215 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.002981 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.920178 B = 9389.296085 C =10474.063743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.162 3.838 7 H 0.033 0.967 8 C 0.141 3.859 9 N -0.689 5.689 10 C 0.505 3.495 11 O -0.584 6.584 12 C 0.045 3.955 13 O -0.370 6.370 14 C 0.044 3.956 15 H 0.099 0.901 16 C -0.153 4.153 17 C 0.052 3.948 18 O -0.400 6.400 19 C 0.031 3.969 20 N -0.595 5.595 21 C -0.228 4.228 22 H 0.059 0.941 23 C -0.029 4.029 24 N -0.922 5.922 25 Si 0.930 3.070 26 H -0.283 1.283 27 H -0.284 1.284 28 H -0.300 1.300 29 C 0.197 3.803 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.414 0.586 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.104 0.896 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.247 0.753 52 H -0.004 1.004 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.647 -4.375 2.368 7.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.095 4.095 3 C -0.174 4.174 4 C -0.128 4.128 5 C -0.165 4.165 6 C 0.056 3.944 7 H 0.051 0.949 8 C 0.018 3.982 9 N -0.341 5.341 10 C 0.291 3.709 11 O -0.465 6.465 12 C -0.034 4.034 13 O -0.289 6.289 14 C -0.014 4.014 15 H 0.117 0.883 16 C -0.191 4.191 17 C -0.024 4.024 18 O -0.320 6.320 19 C -0.046 4.046 20 N -0.319 5.319 21 C -0.359 4.359 22 H 0.076 0.924 23 C -0.225 4.225 24 N -0.569 5.569 25 Si 0.761 3.239 26 H -0.208 1.208 27 H -0.211 1.211 28 H -0.227 1.227 29 C 0.071 3.929 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.252 0.748 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.096 0.904 47 H 0.122 0.878 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.106 0.894 51 H 0.056 0.944 52 H 0.014 0.986 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.353 -4.094 2.896 8.094 hybrid contribution -0.358 0.546 -1.621 1.748 sum 5.995 -3.548 1.275 7.082 Atomic orbital electron populations 1.21705 0.94289 1.01325 1.01293 1.21169 0.95290 0.95956 0.97057 1.21618 1.00762 0.95286 0.99767 1.21383 0.94817 0.99804 0.96824 1.21957 0.96447 1.00812 0.97248 1.20861 0.89896 0.95328 0.88327 0.94899 1.21244 0.93900 0.96229 0.86876 1.45897 1.06372 1.54299 1.27520 1.20600 0.82599 0.80755 0.86905 1.90643 1.57538 1.47157 1.51199 1.22344 0.82497 1.01924 0.96634 1.88031 1.18658 1.75978 1.46212 1.23986 0.96304 0.92172 0.88921 0.88315 1.23399 0.94114 0.99329 1.02247 1.23565 1.00946 0.82548 0.95344 1.88387 1.37022 1.39841 1.66787 1.23645 0.85875 0.96587 0.98515 1.44179 1.01822 1.69778 1.16136 1.19179 0.99369 1.32094 0.85242 0.92354 1.25428 0.98818 0.99806 0.98454 1.70099 1.25812 1.42795 1.18174 0.85777 0.78283 0.78721 0.81128 1.20808 1.21095 1.22737 1.20582 0.82553 0.95172 0.94589 0.91429 0.94029 0.93019 0.93535 0.95262 0.92324 0.90988 0.92683 0.92268 0.90337 0.93829 0.91117 0.74821 0.87393 0.89160 0.87748 0.90384 0.87761 0.90062 0.91281 0.89369 0.94354 0.98637 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 8.48 71.98 0.61 -3.08 16 2 C -0.09 -3.09 0.77 -52.10 -0.04 -3.13 16 3 C -0.12 -3.92 7.99 71.98 0.57 -3.35 16 4 C -0.09 -2.58 4.71 30.62 0.14 -2.44 16 5 C -0.13 -3.71 5.03 30.67 0.15 -3.56 16 6 C 0.16 5.73 3.01 44.98 0.14 5.87 16 7 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 8 C 0.14 5.07 4.43 86.38 0.38 5.45 16 9 N -0.69 -24.90 3.85 -463.06 -1.78 -26.68 16 10 C 0.51 18.72 7.91 87.66 0.69 19.41 16 11 O -0.58 -26.10 16.50 15.99 0.26 -25.84 16 12 C 0.05 1.32 6.27 71.24 0.45 1.77 16 13 O -0.37 -11.40 9.61 -129.94 -1.25 -12.65 16 14 C 0.04 1.01 3.46 31.86 0.11 1.12 16 15 H 0.10 1.89 7.86 -2.39 -0.02 1.87 16 16 C -0.15 -3.04 6.91 32.14 0.22 -2.82 16 17 C 0.05 0.88 7.78 72.74 0.57 1.45 16 18 O -0.40 -9.33 11.36 -148.98 -1.69 -11.02 16 19 C 0.03 0.68 7.58 72.45 0.55 1.23 16 20 N -0.60 -25.39 2.41 -675.23 -1.63 -27.02 16 21 C -0.23 -10.81 6.94 84.03 0.58 -10.22 16 22 H 0.06 2.90 5.88 -2.91 -0.02 2.89 16 23 C -0.03 -1.42 5.01 84.86 0.42 -1.00 16 24 N -0.92 -48.60 11.17 21.65 0.24 -48.36 16 25 Si 0.93 41.87 29.57 68.60 2.03 43.90 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 C 0.20 8.41 3.94 86.36 0.34 8.75 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.73 5.97 -2.38 -0.01 1.71 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.86 6.34 -2.39 -0.02 1.85 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.76 7.42 -2.39 -0.02 1.75 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.41 15.20 7.39 -92.71 -0.68 14.52 16 43 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.09 2.51 8.11 -2.39 -0.02 2.49 16 45 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 1.68 8.05 -2.38 -0.02 1.66 16 50 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.25 12.90 8.31 -92.71 -0.77 12.13 16 52 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 53 H 0.05 2.48 6.19 -2.38 -0.01 2.47 16 Total: -1.00 -63.02 405.95 2.28 -60.74 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.20 Total: 31.47 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.90 Total: 15.45 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.17 Total: -102.05 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -2.68 Total: -49.50 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -63.02 2.28 -60.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099069321.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.277 kcal (2) G-P(sol) polarization free energy of solvation -63.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds