Wall clock time and date at job start Sat Apr 11 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47134 * 272.92106 * 3 2 1 5 5 H 1.48504 * 109.47013 * 32.91770 * 3 2 1 6 6 H 1.48497 * 109.47198 * 152.91761 * 3 2 1 7 7 C 1.38817 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99761 * 339.34154 * 7 2 1 9 9 N 1.36937 * 120.00111 * 159.34806 * 7 2 1 10 10 C 1.46925 * 120.63161 * 152.61053 * 9 7 2 11 11 C 1.53189 * 108.77329 * 126.41545 * 10 9 7 12 12 C 1.53041 * 109.31073 * 54.63839 * 11 10 9 13 13 H 1.08997 * 109.46409 * 58.64415 * 12 11 10 14 14 N 1.46505 * 109.45606 * 178.61495 * 12 11 10 15 15 C 1.34779 * 119.99874 * 274.72109 * 14 12 11 16 16 O 1.21283 * 119.99696 * 0.27733 * 15 14 12 17 17 C 1.50696 * 120.00013 * 180.27587 * 15 14 12 18 18 C 1.52997 * 109.47281 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47204 * 179.97438 * 18 17 15 20 20 C 1.53001 * 109.46865 * 180.02562 * 19 18 17 21 21 C 1.53177 * 109.54752 * 294.82332 * 20 19 18 22 22 C 1.53107 * 109.15794 * 183.23927 * 21 20 19 23 23 O 1.42904 * 109.48315 * 57.48159 * 22 21 20 24 24 C 1.42910 * 114.09298 * 298.88333 * 23 22 21 25 25 C 1.53086 * 109.41621 * 61.16437 * 24 23 22 26 26 C 1.53035 * 109.53760 * 298.63127 * 12 11 10 27 27 H 1.09010 * 109.50053 * 301.41923 * 26 12 11 28 28 O 1.42895 * 109.49923 * 181.32140 * 26 12 11 29 29 C 1.46927 * 120.62713 * 332.63959 * 9 7 2 30 30 H 0.97001 * 120.00064 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.58521 * 6.62852 * 10 9 7 32 32 H 1.09000 * 109.70231 * 246.27267 * 10 9 7 33 33 H 1.08997 * 109.49681 * 294.68494 * 11 10 9 34 34 H 1.09002 * 109.52297 * 174.60082 * 11 10 9 35 35 H 0.97003 * 120.00160 * 95.00004 * 14 12 11 36 36 H 1.08993 * 109.47519 * 300.00045 * 17 15 14 37 37 H 1.09004 * 109.46976 * 60.00026 * 17 15 14 38 38 H 1.09004 * 109.47464 * 300.00212 * 18 17 15 39 39 H 1.09004 * 109.46907 * 60.00212 * 18 17 15 40 40 H 1.08990 * 109.47246 * 299.99899 * 19 18 17 41 41 H 1.08997 * 109.46708 * 60.00538 * 19 18 17 42 42 H 1.09003 * 109.54259 * 55.00601 * 20 19 18 43 43 H 1.08997 * 109.52463 * 303.06033 * 21 20 19 44 44 H 1.09011 * 109.51923 * 63.24777 * 21 20 19 45 45 H 1.08996 * 109.40790 * 297.49451 * 22 21 20 46 46 H 1.09003 * 109.48655 * 177.50746 * 22 21 20 47 47 H 1.09000 * 109.47641 * 301.17700 * 24 23 22 48 48 H 1.09004 * 109.48428 * 181.15373 * 24 23 22 49 49 H 1.09001 * 109.51994 * 182.48566 * 25 24 23 50 50 H 1.08998 * 109.57539 * 62.32636 * 25 24 23 51 51 H 0.96701 * 114.00411 * 179.97438 * 28 26 12 52 52 H 1.08995 * 109.58861 * 353.37025 * 29 9 7 53 53 H 1.09000 * 109.58518 * 113.79758 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4360 2.0820 -1.3983 5 1 1.4799 2.6340 0.7609 6 1 3.5772 1.4230 0.6374 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1075 0.3290 9 7 3.3136 -1.2402 -0.4188 10 6 4.2349 -2.2633 0.0943 11 6 4.8751 -2.9900 -1.0926 12 6 5.5290 -1.9641 -2.0212 13 1 6.2780 -1.3983 -1.4673 14 7 6.1708 -2.6583 -3.1404 15 6 7.4238 -3.1367 -3.0072 16 8 8.0180 -2.9969 -1.9592 17 6 8.0864 -3.8453 -4.1604 18 6 9.4931 -4.2841 -3.7490 19 6 10.1656 -5.0041 -4.9197 20 6 11.5721 -5.4434 -4.5080 21 6 12.4390 -4.2080 -4.2464 22 6 13.8649 -4.6558 -3.9143 23 8 14.3798 -5.4436 -4.9897 24 6 13.6361 -6.6365 -5.2471 25 6 12.2017 -6.2683 -5.6349 26 6 4.4624 -1.0075 -2.5590 27 1 3.6996 -1.5754 -3.0919 28 8 5.0687 -0.0692 -3.4499 29 6 3.8174 -0.2583 -1.3887 30 1 -0.4850 0.8400 0.0004 31 1 3.6838 -2.9775 0.7060 32 1 5.0116 -1.7902 0.6952 33 1 4.1086 -3.5391 -1.6394 34 1 5.6315 -3.6855 -0.7289 35 1 5.6956 -2.7701 -3.9786 36 1 7.4982 -4.7207 -4.4353 37 1 8.1518 -3.1692 -5.0130 38 1 10.0813 -3.4084 -3.4744 39 1 9.4281 -4.9600 -2.8963 40 1 9.5775 -5.8798 -5.1938 41 1 10.2306 -4.3285 -5.7726 42 1 11.5150 -6.0473 -3.6023 43 1 12.4541 -3.5786 -5.1362 44 1 12.0278 -3.6454 -3.4081 45 1 13.8543 -5.2503 -3.0007 46 1 14.4971 -3.7796 -3.7705 47 1 13.6226 -7.2568 -4.3509 48 1 14.1034 -7.1873 -6.0634 49 1 11.6210 -7.1778 -5.7886 50 1 12.2108 -5.6822 -6.5539 51 1 4.4497 0.5693 -3.8297 52 1 2.9908 0.3503 -1.7555 53 1 4.5598 0.3803 -0.9101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099869528.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:50 Heat of formation + Delta-G solvation = -160.973503 kcal Electronic energy + Delta-G solvation = -30191.877678 eV Core-core repulsion = 26061.935084 eV Total energy + Delta-G solvation = -4129.942594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16748 -40.38078 -39.60113 -37.05292 -36.83834 -35.80717 -34.13848 -33.58790 -32.01746 -31.83112 -30.74806 -28.93994 -26.90192 -25.14686 -24.57640 -24.33075 -23.32315 -22.15116 -21.41274 -21.07605 -20.86215 -19.03314 -18.31083 -17.89683 -17.69738 -17.07017 -16.99001 -16.77734 -16.58422 -16.13567 -15.88211 -15.57004 -15.32823 -15.22696 -14.95236 -14.88534 -14.64127 -14.53475 -14.18647 -13.99874 -13.82824 -13.68371 -13.25510 -13.09830 -12.78901 -12.70164 -12.66638 -12.51213 -12.42905 -12.35414 -12.20526 -12.01804 -11.81482 -11.74426 -11.59383 -11.42121 -11.16362 -11.15238 -11.11854 -10.91058 -10.64150 -10.38825 -10.03166 -9.03960 -8.20592 -5.54340 1.23636 1.40191 1.47883 1.72437 2.21101 2.36006 2.87113 2.98874 3.12145 3.31776 3.66238 3.75803 3.77821 3.85346 3.96104 3.99373 4.05649 4.10495 4.18691 4.23118 4.24831 4.33015 4.33505 4.50114 4.52683 4.57124 4.65883 4.68075 4.73959 4.76124 4.78590 4.80571 4.86469 4.87979 4.91068 4.96879 4.99120 5.04054 5.11083 5.15831 5.21055 5.29446 5.31872 5.45274 5.51061 5.55882 5.80161 6.08873 6.28098 6.63219 6.70303 6.85678 7.33923 7.54033 7.94073 8.98598 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030941 B = 0.001814 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.733526 B =15435.468964 C =15550.359164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.028 4.028 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.310 1.310 6 H -0.273 1.273 7 C -0.251 4.251 8 H 0.060 0.940 9 N -0.613 5.613 10 C 0.143 3.857 11 C -0.125 4.125 12 C 0.167 3.833 13 H 0.062 0.938 14 N -0.708 5.708 15 C 0.505 3.495 16 O -0.590 6.590 17 C -0.130 4.130 18 C -0.101 4.101 19 C -0.104 4.104 20 C -0.091 4.091 21 C -0.151 4.151 22 C 0.056 3.944 23 O -0.407 6.407 24 C 0.053 3.947 25 C -0.146 4.146 26 C 0.097 3.903 27 H 0.072 0.928 28 O -0.569 6.569 29 C 0.097 3.903 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.413 0.587 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.097 0.903 47 H 0.053 0.947 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.069 0.931 51 H 0.394 0.606 52 H 0.066 0.934 53 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.408 -12.137 -15.884 30.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.224 4.224 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.239 1.239 6 H -0.198 1.198 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.339 5.339 10 C 0.018 3.982 11 C -0.165 4.165 12 C 0.061 3.939 13 H 0.080 0.920 14 N -0.359 5.359 15 C 0.294 3.706 16 O -0.470 6.470 17 C -0.170 4.170 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.109 4.109 21 C -0.189 4.189 22 C -0.021 4.021 23 O -0.326 6.326 24 C -0.024 4.024 25 C -0.184 4.184 26 C 0.036 3.964 27 H 0.089 0.911 28 O -0.376 6.376 29 C -0.029 4.029 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.121 0.879 49 H 0.106 0.894 50 H 0.088 0.912 51 H 0.243 0.757 52 H 0.084 0.916 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 24.391 -12.242 -15.103 31.191 hybrid contribution -1.202 1.410 0.354 1.887 sum 23.188 -10.831 -14.749 29.539 Atomic orbital electron populations 1.69942 1.07182 1.27301 1.55085 1.25847 0.95790 1.00558 1.00167 0.86038 0.78335 0.80739 0.78022 1.19212 1.23866 1.19765 1.18875 0.86224 0.93862 1.39078 0.92231 1.44404 1.07995 1.34321 1.47146 1.21090 0.91906 0.90795 0.94452 1.22207 0.99690 0.97662 0.96923 1.20617 0.93330 0.91937 0.87989 0.92019 1.45937 1.15816 1.57561 1.16607 1.21514 0.80890 0.78083 0.90124 1.90680 1.64885 1.59628 1.31821 1.21721 0.97293 1.02097 0.95882 1.21319 0.93864 1.00300 0.98400 1.21568 0.94569 1.00677 0.97338 1.21209 0.94857 0.96154 0.98692 1.22274 0.95592 0.98438 1.02598 1.22673 0.94893 0.95385 0.89103 1.87898 1.54239 1.36530 1.53979 1.22755 0.91991 0.86357 1.01264 1.22215 0.96285 1.01185 0.98689 1.22399 0.93716 0.90106 0.90177 0.91054 1.86423 1.40436 1.47760 1.63016 1.22049 0.97209 0.92697 0.90931 0.92770 0.91339 0.95416 0.90927 0.90680 0.75041 0.86410 0.86932 0.92775 0.92788 0.90319 0.91098 0.91396 0.91391 0.90932 0.92962 0.88490 0.92849 0.87863 0.89367 0.91231 0.75652 0.91643 0.95327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.65 13.97 21.65 0.30 -57.35 16 2 C -0.03 -1.59 5.23 84.86 0.44 -1.15 16 3 Si 0.94 45.27 24.34 68.60 1.67 46.94 16 4 H -0.27 -11.65 6.62 99.48 0.66 -11.00 16 5 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 6 H -0.27 -13.11 6.63 99.48 0.66 -12.45 16 7 C -0.25 -13.75 10.04 84.03 0.84 -12.91 16 8 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 9 N -0.61 -28.00 2.77 -699.11 -1.94 -29.94 16 10 C 0.14 5.55 6.52 86.36 0.56 6.11 16 11 C -0.12 -4.01 5.65 30.67 0.17 -3.83 16 12 C 0.17 5.25 2.12 45.02 0.10 5.35 16 13 H 0.06 2.31 7.57 -2.39 -0.02 2.29 16 14 N -0.71 -17.24 4.92 -442.40 -2.18 -19.41 16 15 C 0.51 12.69 7.80 87.66 0.68 13.37 16 16 O -0.59 -20.25 15.64 -3.04 -0.05 -20.30 16 17 C -0.13 -1.94 5.70 29.85 0.17 -1.77 16 18 C -0.10 -1.62 4.26 30.59 0.13 -1.49 16 19 C -0.10 -1.14 4.69 30.60 0.14 -0.99 16 20 C -0.09 -1.09 2.27 -10.67 -0.02 -1.11 16 21 C -0.15 -2.11 5.10 30.69 0.16 -1.95 16 22 C 0.06 0.81 6.84 72.02 0.49 1.30 16 23 O -0.41 -6.99 10.77 -148.98 -1.60 -8.60 16 24 C 0.05 0.62 6.84 72.01 0.49 1.11 16 25 C -0.15 -1.48 5.43 30.68 0.17 -1.31 16 26 C 0.10 3.12 3.14 30.67 0.10 3.21 16 27 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 28 O -0.57 -15.90 13.16 -148.98 -1.96 -17.86 16 29 C 0.10 3.97 3.83 86.36 0.33 4.30 16 30 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.41 7.61 8.60 -92.71 -0.80 6.81 16 36 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.05 1.06 6.61 -2.39 -0.02 1.05 16 39 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.10 6.74 -2.38 -0.02 1.08 16 45 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.39 8.20 9.08 -74.06 -0.67 7.53 16 52 H 0.07 2.83 4.49 -2.39 -0.01 2.82 16 53 H 0.03 1.22 7.07 -2.39 -0.02 1.20 16 Total: -1.00 -72.41 404.24 -1.46 -73.87 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.67 Total: 24.41 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 4.96 Total: 8.24 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -3.81 Total: -106.70 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -3.61 Total: -46.76 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -72.41 -1.46 -73.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099869528.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.108 kcal (2) G-P(sol) polarization free energy of solvation -72.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds