Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.51573 * 2 1 4 4 N 1.46501 * 109.46957 * 305.10467 * 3 2 1 5 5 C 1.34780 * 119.99803 * 179.97438 * 4 3 2 6 6 O 1.21277 * 119.99870 * 359.72981 * 5 4 3 7 7 C 1.50692 * 120.00122 * 179.97438 * 5 4 3 8 8 O 1.42896 * 109.47734 * 179.72835 * 7 5 4 9 9 C 1.42901 * 114.00802 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47439 * 179.97438 * 9 8 7 11 11 C 1.54260 * 110.03338 * 292.16866 * 10 9 8 12 12 C 1.54884 * 104.19899 * 217.10753 * 11 10 9 13 13 C 1.54890 * 102.74664 * 37.93709 * 12 11 10 14 14 C 1.53867 * 110.03058 * 175.00027 * 10 9 8 15 15 C 1.53294 * 109.51300 * 120.10501 * 2 1 3 16 16 N 1.47154 * 108.38500 * 67.66965 * 15 2 1 17 17 C 1.36931 * 120.98320 * 230.51007 * 16 15 2 18 18 H 1.08001 * 119.99966 * 153.32336 * 17 16 15 19 19 C 1.38810 * 120.00102 * 333.33286 * 17 16 15 20 20 N 1.31619 * 120.00139 * 343.54197 * 19 17 16 21 21 Si 1.86798 * 120.00051 * 163.54610 * 19 17 16 22 22 H 1.48497 * 109.47425 * 89.99689 * 21 19 17 23 23 H 1.48500 * 109.47443 * 209.99956 * 21 19 17 24 24 H 1.48507 * 109.47409 * 329.99811 * 21 19 17 25 25 C 1.47155 * 118.03293 * 50.53946 * 16 15 2 26 26 C 1.53293 * 108.38392 * 309.46137 * 25 16 15 27 27 O 1.42962 * 109.22314 * 52.30354 * 26 25 16 28 28 H 1.08998 * 109.47363 * 59.99936 * 1 2 3 29 29 H 1.09006 * 109.47563 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47200 * 299.99666 * 1 2 3 31 31 H 1.08998 * 109.47271 * 185.10212 * 3 2 1 32 32 H 1.09008 * 109.46674 * 65.10389 * 3 2 1 33 33 H 0.96999 * 120.00103 * 359.97438 * 4 3 2 34 34 H 1.09009 * 109.47166 * 299.73188 * 7 5 4 35 35 H 1.09001 * 109.47347 * 59.72459 * 7 5 4 36 36 H 1.09007 * 109.46709 * 300.00137 * 9 8 7 37 37 H 1.09000 * 109.46820 * 59.99300 * 9 8 7 38 38 H 1.09003 * 110.01517 * 53.61017 * 10 9 8 39 39 H 1.09008 * 110.48348 * 335.78407 * 11 10 9 40 40 H 1.09004 * 110.49209 * 98.42434 * 11 10 9 41 41 H 1.09002 * 110.75268 * 279.62840 * 12 11 10 42 42 H 1.08995 * 110.75998 * 156.25368 * 12 11 10 43 43 H 1.08999 * 110.48526 * 203.37999 * 13 12 11 44 44 H 1.09002 * 110.59816 * 80.79897 * 13 12 11 45 45 H 1.09009 * 110.03387 * 238.56838 * 14 10 9 46 46 H 1.09001 * 110.03755 * 359.97438 * 14 10 9 47 47 H 1.09003 * 109.68172 * 187.39474 * 15 2 1 48 48 H 1.08999 * 109.67970 * 307.90996 * 15 2 1 49 49 H 0.96991 * 119.99907 * 180.02562 * 20 19 17 50 50 H 1.08995 * 109.68573 * 69.18839 * 25 16 15 51 51 H 1.09007 * 109.68016 * 189.74253 * 25 16 15 52 52 H 1.09003 * 109.51292 * 172.23461 * 26 25 16 53 53 H 1.09003 * 109.51392 * 292.32931 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4555 2.1677 -1.1300 5 6 1.7643 3.4641 -1.3312 6 8 2.5230 4.0313 -0.5739 7 6 1.1625 4.2104 -2.4938 8 8 1.6343 5.5592 -2.4898 9 6 1.1213 6.3578 -3.5581 10 6 1.6897 7.7744 -3.4544 11 6 1.1267 8.4794 -2.2031 12 6 0.9266 9.9481 -2.6522 13 6 0.4281 9.7946 -4.1106 14 6 1.2455 8.6106 -4.6672 15 6 2.0420 -0.7247 1.2500 16 7 1.6969 -2.1505 1.1339 17 6 1.0627 -2.8077 2.1541 18 1 0.4443 -3.6670 1.9409 19 6 1.2144 -2.3692 3.4624 20 7 2.1964 -1.5493 3.7720 21 14 0.0250 -2.9428 4.7836 22 1 0.5388 -4.1900 5.4046 23 1 -0.1060 -1.8900 5.8227 24 1 -1.3036 -3.2044 4.1739 25 6 2.0542 -2.8494 -0.1109 26 6 1.5416 -2.0212 -1.2946 27 8 2.0084 -0.6761 -1.1652 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.1272 1.4426 -0.0914 32 1 1.7546 1.9290 0.9323 33 1 0.8456 1.7151 -1.7334 34 1 1.4536 3.7264 -3.4262 35 1 0.0760 4.2053 -2.4057 36 1 1.4120 5.9182 -4.5123 37 1 0.0340 6.3971 -3.4925 38 1 2.7780 7.7371 -3.4049 39 1 0.1743 8.0364 -1.9117 40 1 1.8407 8.4257 -1.3811 41 1 1.8700 10.4932 -2.6218 42 1 0.1743 10.4412 -2.0367 43 1 0.6323 10.7008 -4.6809 44 1 -0.6373 9.5650 -4.1296 45 1 2.1183 8.9800 -5.2059 46 1 0.6254 8.0071 -5.3300 47 1 3.1240 -0.6135 1.3215 48 1 1.5702 -0.3034 2.1377 49 1 2.3026 -1.2432 4.6862 50 1 3.1373 -2.9521 -0.1764 51 1 1.5899 -3.8356 -0.1245 52 1 1.9139 -2.4479 -2.2259 53 1 0.4516 -2.0300 -1.3003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108004571.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -135.496226 kcal Electronic energy + Delta-G solvation = -30324.201270 eV Core-core repulsion = 26195.363454 eV Total energy + Delta-G solvation = -4128.837816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18199 -40.33165 -39.54554 -37.80591 -36.52541 -35.92778 -33.31711 -33.17331 -31.52267 -29.67217 -29.55606 -29.17561 -27.97736 -26.59194 -25.10360 -24.96559 -22.94386 -21.69346 -21.53302 -20.60045 -20.27838 -18.96499 -18.40800 -17.91072 -17.49913 -17.20915 -16.86670 -16.70754 -16.18142 -16.10166 -16.02044 -15.62065 -15.53950 -15.31840 -15.16945 -14.71143 -14.46141 -14.29664 -14.19943 -13.88186 -13.56599 -13.25635 -13.17911 -12.92116 -12.78064 -12.75767 -12.53361 -12.41895 -12.17448 -12.14616 -11.96566 -11.94579 -11.89696 -11.84809 -11.68243 -11.48228 -11.31191 -11.15167 -10.91029 -10.72573 -10.61682 -10.49577 -10.14554 -8.71148 -7.89743 -5.36979 1.45504 1.47500 1.56664 1.58218 1.80117 2.47626 2.78493 2.98233 3.25615 3.50376 3.70240 3.71976 3.76447 3.91910 3.95001 4.02755 4.10822 4.22026 4.27580 4.38126 4.43342 4.43754 4.47235 4.52512 4.56722 4.58219 4.64457 4.70204 4.72338 4.77248 4.79733 4.85787 4.93002 4.97265 5.05139 5.08022 5.10227 5.12962 5.21530 5.25929 5.34596 5.36213 5.37136 5.48164 5.49127 5.53957 5.61626 6.12978 6.29610 6.37675 6.56581 7.06904 7.23060 7.76345 8.30518 9.15923 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.001942 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.183136 B =14412.396712 C =15202.914503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.095 3.905 3 C 0.151 3.849 4 N -0.702 5.702 5 C 0.505 3.495 6 O -0.580 6.580 7 C 0.051 3.949 8 O -0.397 6.397 9 C 0.064 3.936 10 C -0.095 4.095 11 C -0.118 4.118 12 C -0.127 4.127 13 C -0.122 4.122 14 C -0.113 4.113 15 C 0.167 3.833 16 N -0.606 5.606 17 C -0.259 4.259 18 H 0.075 0.925 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.100 3.900 26 C 0.053 3.947 27 O -0.385 6.385 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.417 0.583 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.079 0.921 47 H -0.010 1.010 48 H 0.066 0.934 49 H 0.250 0.750 50 H 0.011 0.989 51 H 0.072 0.928 52 H 0.118 0.882 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 16.396 -21.204 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 C 0.026 3.974 4 N -0.357 5.357 5 C 0.292 3.708 6 O -0.459 6.459 7 C -0.028 4.028 8 O -0.316 6.316 9 C -0.012 4.012 10 C -0.114 4.114 11 C -0.156 4.156 12 C -0.165 4.165 13 C -0.160 4.160 14 C -0.150 4.150 15 C 0.040 3.960 16 N -0.330 5.330 17 C -0.388 4.388 18 H 0.092 0.908 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.190 1.190 25 C -0.025 4.025 26 C -0.024 4.024 27 O -0.305 6.305 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.255 0.745 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.008 0.992 48 H 0.084 0.916 49 H 0.059 0.941 50 H 0.029 0.971 51 H 0.091 0.909 52 H 0.136 0.864 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.428 16.987 -20.522 27.657 hybrid contribution -0.284 -1.010 1.378 1.732 sum -7.712 15.976 -19.144 26.100 Atomic orbital electron populations 1.22115 0.93685 1.02987 1.02279 1.22165 0.94840 0.90324 0.87322 1.20982 0.97692 0.89133 0.89608 1.45694 1.48958 1.10443 1.30584 1.21067 0.81093 0.81986 0.86658 1.90715 1.37778 1.68678 1.48734 1.22265 1.00224 0.83801 0.96488 1.87992 1.71147 1.20917 1.51567 1.22931 0.98291 0.90619 0.89341 1.21796 1.00358 0.92941 0.96255 1.22367 1.00416 0.95924 0.96890 1.22540 1.01255 0.95741 0.96956 1.22368 0.99920 0.98331 0.95349 1.22120 1.00498 0.96378 0.96053 1.21054 0.95346 0.84479 0.95135 1.44239 1.68627 1.05454 1.14705 1.19503 1.20999 1.12328 0.86003 0.90779 1.25822 0.98805 1.00742 0.99298 1.70182 1.31156 1.38548 1.18439 0.85286 0.79443 0.76958 0.78824 1.21347 1.22201 1.18999 1.21838 0.96979 0.96429 0.87241 1.23112 0.99214 0.81707 0.98407 1.87834 1.73297 1.26466 1.42858 0.89949 0.91902 0.92636 0.92893 0.91267 0.74467 0.87237 0.87128 0.91429 0.91514 0.91756 0.91838 0.93558 0.91637 0.91182 0.90640 0.91026 0.90920 0.90205 0.99154 0.91572 0.94103 0.97129 0.90911 0.86414 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 7.87 71.98 0.57 -4.20 16 2 C 0.09 3.43 0.78 -10.70 -0.01 3.42 16 3 C 0.15 5.26 4.85 86.38 0.42 5.68 16 4 N -0.70 -18.68 5.19 -463.06 -2.41 -21.09 16 5 C 0.50 14.66 7.91 87.65 0.69 15.36 16 6 O -0.58 -23.52 16.50 16.02 0.26 -23.25 16 7 C 0.05 0.97 6.42 71.23 0.46 1.42 16 8 O -0.40 -9.52 9.73 -129.94 -1.26 -10.78 16 9 C 0.06 0.99 4.98 71.98 0.36 1.34 16 10 C -0.09 -1.52 3.19 -10.08 -0.03 -1.55 16 11 C -0.12 -2.10 6.22 31.67 0.20 -1.90 16 12 C -0.13 -1.70 6.91 31.88 0.22 -1.48 16 13 C -0.12 -1.24 6.83 31.67 0.22 -1.02 16 14 C -0.11 -1.20 6.46 31.32 0.20 -1.00 16 15 C 0.17 8.02 4.10 86.35 0.35 8.37 16 16 N -0.61 -29.53 2.57 -697.54 -1.79 -31.32 16 17 C -0.26 -13.71 9.65 84.03 0.81 -12.90 16 18 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 19 C -0.05 -2.82 4.95 84.86 0.42 -2.40 16 20 N -0.94 -55.47 11.14 21.65 0.24 -55.23 16 21 Si 0.97 44.08 29.58 68.60 2.03 46.11 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 23 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 C 0.10 3.98 6.73 86.35 0.58 4.56 16 26 C 0.05 1.63 6.60 72.08 0.48 2.10 16 27 O -0.39 -13.17 10.18 -148.98 -1.52 -14.69 16 28 H 0.08 1.88 6.57 -2.39 -0.02 1.87 16 29 H 0.06 2.13 6.12 -2.38 -0.01 2.12 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.42 8.30 6.99 -92.71 -0.65 7.66 16 34 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.07 0.80 8.00 -2.39 -0.02 0.78 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.14 7.76 -2.38 -0.02 1.12 16 40 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.08 0.63 7.67 -2.39 -0.02 0.62 16 47 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 48 H 0.07 3.57 6.16 -2.39 -0.01 3.55 16 49 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 50 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.07 2.68 7.96 -2.38 -0.02 2.66 16 52 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 53 H 0.06 1.80 6.26 -2.39 -0.01 1.79 16 Total: -1.00 -74.15 410.60 1.72 -72.43 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.23 Total: 22.04 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 5.93 Total: 15.80 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.96 Total: -107.64 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -2.52 Total: -48.73 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.15 1.72 -72.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108004571.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.068 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds