Wall clock time and date at job start Sat Apr 11 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 120.00053 * 2 1 4 4 C 1.52990 * 109.47124 * 126.31070 * 3 2 1 5 5 C 1.53005 * 109.46944 * 6.30899 * 3 2 1 6 6 C 1.53001 * 109.46862 * 175.32162 * 5 3 2 7 7 O 1.42903 * 109.46711 * 174.06593 * 6 5 3 8 8 C 1.42904 * 113.99665 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47036 * 246.31367 * 3 2 1 10 10 O 1.21277 * 120.00373 * 119.99681 * 9 3 2 11 11 N 1.34777 * 120.00040 * 299.99778 * 9 3 2 12 12 C 1.46500 * 120.00345 * 180.02562 * 11 9 3 13 13 C 1.52996 * 109.47281 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.51114 * 304.99882 * 13 12 11 15 15 C 1.53301 * 109.51478 * 184.90041 * 13 12 11 16 16 N 1.47147 * 108.38781 * 187.77439 * 15 13 12 17 17 C 1.36937 * 120.98209 * 230.51655 * 16 15 13 18 18 H 1.07993 * 120.00284 * 149.82365 * 17 16 15 19 19 C 1.38809 * 119.99600 * 329.81805 * 17 16 15 20 20 N 1.31616 * 120.00535 * 346.91913 * 19 17 16 21 21 Si 1.86811 * 119.99767 * 166.92276 * 19 17 16 22 22 H 1.48494 * 109.46908 * 89.99926 * 21 19 17 23 23 H 1.48502 * 109.46821 * 209.99881 * 21 19 17 24 24 H 1.48500 * 109.46866 * 329.99933 * 21 19 17 25 25 C 1.47148 * 118.03380 * 50.53068 * 16 15 13 26 26 C 1.53292 * 108.39005 * 309.46736 * 25 16 15 27 27 O 1.42953 * 109.51324 * 65.10409 * 13 12 11 28 28 H 1.08002 * 120.00232 * 355.05033 * 1 2 3 29 29 H 1.08002 * 119.99816 * 175.04711 * 1 2 3 30 30 H 1.07997 * 120.00334 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47378 * 299.99725 * 4 3 2 32 32 H 1.08998 * 109.47207 * 60.00134 * 4 3 2 33 33 H 1.09000 * 109.47114 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.46711 * 55.32044 * 5 3 2 35 35 H 1.08999 * 109.47018 * 295.32608 * 5 3 2 36 36 H 1.08999 * 109.47133 * 54.07079 * 6 5 3 37 37 H 1.08997 * 109.47019 * 294.06846 * 6 5 3 38 38 H 1.08998 * 109.47258 * 299.99822 * 8 7 6 39 39 H 1.08994 * 109.46851 * 60.00290 * 8 7 6 40 40 H 1.09000 * 109.46772 * 180.02562 * 8 7 6 41 41 H 0.97004 * 119.99906 * 0.02562 * 11 9 3 42 42 H 1.08998 * 109.47142 * 300.00106 * 12 11 9 43 43 H 1.09000 * 109.46747 * 60.00024 * 12 11 9 44 44 H 1.08996 * 109.46720 * 60.00289 * 14 13 12 45 45 H 1.09006 * 109.47057 * 179.97438 * 14 13 12 46 46 H 1.08991 * 109.47383 * 300.00013 * 14 13 12 47 47 H 1.09001 * 109.67927 * 307.50127 * 15 13 12 48 48 H 1.09007 * 109.67823 * 68.01025 * 15 13 12 49 49 H 0.97005 * 120.00308 * 179.97438 * 20 19 17 50 50 H 1.09000 * 109.68063 * 69.19083 * 25 16 15 51 51 H 1.09004 * 109.68071 * 189.74253 * 25 16 15 52 52 H 1.09003 * 109.51693 * 172.22428 * 26 25 16 53 53 H 1.09003 * 109.51130 * 292.33031 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0582 1.3197 1.1623 5 6 1.0768 2.4637 0.1585 6 6 1.8494 3.7791 0.2756 7 8 0.9294 4.8726 0.2847 8 6 1.5515 6.1546 0.3920 9 6 2.8090 1.4548 -1.3011 10 8 2.5743 2.3953 -2.0298 11 7 3.7366 0.5433 -1.6550 12 6 4.4617 0.6889 -2.9196 13 6 5.4487 -0.4693 -3.0779 14 6 6.3646 -0.5312 -1.8538 15 6 6.2934 -0.2536 -4.3389 16 7 7.0983 -1.4634 -4.5710 17 6 8.4485 -1.3816 -4.7841 18 1 9.0934 -2.1923 -4.4789 19 6 8.9882 -0.2567 -5.3924 20 7 8.1996 0.6089 -5.9934 21 14 10.8341 0.0287 -5.3582 22 1 11.4553 -0.6073 -6.5476 23 1 11.1097 1.4878 -5.3763 24 1 11.4043 -0.5676 -4.1235 25 6 6.4092 -2.7635 -4.5678 26 6 5.5589 -2.8571 -3.2957 27 8 4.7279 -1.6979 -3.1976 28 1 -0.5400 0.9318 0.0807 29 1 -0.5400 -0.9318 -0.0808 30 1 1.8500 -0.9353 0.0004 31 1 2.5190 1.2116 2.1034 32 1 3.7612 0.4944 1.0494 33 1 3.6029 2.2639 1.1626 34 1 0.4795 2.3118 1.0576 35 1 0.4208 2.5037 -0.7110 36 1 2.5255 3.8802 -0.5733 37 1 2.4253 3.7811 1.2010 38 1 2.1209 6.2057 1.3201 39 1 2.2217 6.3052 -0.4542 40 1 0.7863 6.9309 0.3925 41 1 3.9241 -0.2093 -1.0723 42 1 3.7533 0.6789 -3.7479 43 1 5.0068 1.6329 -2.9191 44 1 5.7635 -0.6865 -0.9579 45 1 7.0672 -1.3569 -1.9670 46 1 6.9151 0.4051 -1.7642 47 1 5.6396 -0.0780 -5.1931 48 1 6.9512 0.6042 -4.1978 49 1 8.5767 1.3952 -6.4181 50 1 5.7670 -2.8408 -5.4451 51 1 7.1441 -3.5685 -4.5781 52 1 4.9350 -3.7498 -3.3396 53 1 6.2119 -2.9117 -2.4246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108099576.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:52 Heat of formation + Delta-G solvation = -103.924768 kcal Electronic energy + Delta-G solvation = -31763.680944 eV Core-core repulsion = 27636.212170 eV Total energy + Delta-G solvation = -4127.468775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.65095 -40.55732 -38.80748 -37.34142 -36.54051 -35.95578 -33.25744 -33.13606 -32.39082 -30.21010 -29.56246 -28.08315 -27.40125 -27.21260 -25.47972 -24.97470 -23.60187 -22.73595 -21.94230 -20.44856 -19.78954 -18.92333 -17.96031 -17.61988 -17.44726 -16.98657 -16.83877 -16.77014 -16.43044 -16.11825 -15.64370 -15.57933 -15.38985 -15.21743 -15.17895 -14.77054 -14.69465 -14.49111 -13.99318 -13.87970 -13.51181 -13.20989 -13.19190 -13.10178 -12.91735 -12.77975 -12.65345 -12.54932 -12.53054 -12.42796 -12.19509 -12.16906 -11.95649 -11.89361 -11.83456 -11.64947 -11.14340 -10.98800 -10.73589 -10.56835 -10.51453 -10.14510 -10.06462 -8.66796 -7.89871 -5.41563 1.21220 1.45537 1.46885 1.56179 1.71797 2.18787 2.47703 2.77439 2.79968 3.25933 3.50466 3.62510 3.70326 3.89491 3.93766 4.02145 4.10758 4.12884 4.22104 4.32682 4.42811 4.45877 4.46984 4.49820 4.55500 4.56136 4.57434 4.64246 4.72194 4.78893 4.80068 4.82340 4.85288 4.96915 5.02714 5.03526 5.06476 5.12906 5.15248 5.20800 5.28250 5.36171 5.40364 5.53570 5.61208 5.68657 5.81285 6.22162 6.31283 6.38036 6.54749 7.07505 7.23549 7.75324 8.31350 9.15452 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.002890 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.370406 B = 9685.399551 C =10959.183254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C -0.038 4.038 4 C -0.142 4.142 5 C -0.091 4.091 6 C 0.054 3.946 7 O -0.415 6.415 8 C 0.027 3.973 9 C 0.518 3.482 10 O -0.578 6.578 11 N -0.701 5.701 12 C 0.149 3.851 13 C 0.095 3.905 14 C -0.152 4.152 15 C 0.171 3.829 16 N -0.606 5.606 17 C -0.260 4.260 18 H 0.072 0.928 19 C -0.048 4.048 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.265 1.265 25 C 0.101 3.899 26 C 0.053 3.947 27 O -0.385 6.385 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.100 0.900 41 H 0.413 0.587 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.056 0.944 47 H -0.010 1.010 48 H 0.062 0.938 49 H 0.250 0.750 50 H 0.010 0.990 51 H 0.072 0.928 52 H 0.117 0.883 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 -0.617 19.332 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.178 4.178 3 C -0.041 4.041 4 C -0.199 4.199 5 C -0.128 4.128 6 C -0.022 4.022 7 O -0.334 6.334 8 C -0.069 4.069 9 C 0.306 3.694 10 O -0.458 6.458 11 N -0.353 5.353 12 C 0.024 3.976 13 C 0.053 3.947 14 C -0.210 4.210 15 C 0.044 3.956 16 N -0.330 5.330 17 C -0.390 4.390 18 H 0.090 0.910 19 C -0.243 4.243 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.213 1.213 23 H -0.221 1.221 24 H -0.189 1.189 25 C -0.024 4.024 26 C -0.024 4.024 27 O -0.305 6.305 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.149 0.851 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.118 0.882 41 H 0.251 0.749 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.008 0.992 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.028 0.972 51 H 0.090 0.910 52 H 0.135 0.865 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.961 0.124 18.705 22.757 hybrid contribution 1.726 0.288 -0.952 1.992 sum -11.234 0.413 17.754 21.014 Atomic orbital electron populations 1.24251 0.95942 1.03347 0.97774 1.22745 0.96350 0.96001 1.02751 1.19796 0.96124 0.95665 0.92511 1.21962 0.98074 1.03203 0.96657 1.21377 0.97322 0.90905 1.03230 1.22818 0.92263 0.86570 1.00576 1.87775 1.35004 1.15448 1.95200 1.22885 0.99251 0.84467 1.00336 1.21030 0.79081 0.81285 0.88040 1.90680 1.66751 1.33417 1.54942 1.45831 1.39382 1.28128 1.21948 1.20991 0.93546 0.96570 0.86478 1.22171 0.91292 0.84527 0.96662 1.22104 0.99506 1.02872 0.96479 1.20992 0.92085 0.90759 0.91735 1.44195 1.04315 1.01283 1.83245 1.19468 0.83197 1.04233 1.32139 0.90994 1.25916 1.01829 0.99363 0.97236 1.70162 1.35518 1.13963 1.38567 0.85282 0.80447 0.76533 0.78219 1.21326 1.22137 1.18932 1.21829 0.95429 0.88825 0.96329 1.23103 0.94259 0.87993 0.97062 1.87836 1.33832 1.14435 1.94349 0.87763 0.86430 0.85080 0.88887 0.90479 0.92083 0.88346 0.92255 0.93877 0.91700 0.92664 0.94763 0.88182 0.74900 0.93059 0.91197 0.90223 0.91963 0.92541 0.99237 0.91946 0.94098 0.97227 0.90972 0.86524 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 13.71 67.78 0.93 -1.76 16 2 C -0.16 -2.62 8.54 25.65 0.22 -2.41 16 3 C -0.04 -0.73 0.62 -53.67 -0.03 -0.76 16 4 C -0.14 -1.97 7.88 71.98 0.57 -1.40 16 5 C -0.09 -1.92 2.94 30.60 0.09 -1.83 16 6 C 0.05 1.27 5.04 71.98 0.36 1.63 16 7 O -0.41 -10.46 10.70 -148.98 -1.59 -12.05 16 8 C 0.03 0.50 11.01 113.37 1.25 1.75 16 9 C 0.52 14.47 6.14 87.66 0.54 15.01 16 10 O -0.58 -21.25 13.98 -3.02 -0.04 -21.29 16 11 N -0.70 -18.74 4.98 -463.08 -2.31 -21.04 16 12 C 0.15 5.14 4.85 86.38 0.42 5.56 16 13 C 0.09 3.41 0.78 -10.69 -0.01 3.40 16 14 C -0.15 -4.72 7.87 71.98 0.57 -4.15 16 15 C 0.17 8.18 4.06 86.36 0.35 8.53 16 16 N -0.61 -29.50 2.55 -697.55 -1.78 -31.28 16 17 C -0.26 -13.77 9.63 84.03 0.81 -12.96 16 18 H 0.07 3.65 7.86 -2.91 -0.02 3.62 16 19 C -0.05 -2.61 5.01 84.86 0.43 -2.18 16 20 N -0.94 -55.10 11.20 21.65 0.24 -54.86 16 21 Si 0.97 43.78 29.57 68.60 2.03 45.81 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 C 0.10 4.03 6.73 86.35 0.58 4.61 16 26 C 0.05 1.65 6.60 72.08 0.48 2.12 16 27 O -0.39 -13.23 10.17 -148.98 -1.52 -14.75 16 28 H 0.10 1.61 5.72 -2.91 -0.02 1.60 16 29 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.90 7.56 -2.39 -0.02 0.88 16 33 H 0.06 0.92 6.48 -2.39 -0.02 0.90 16 34 H 0.10 1.63 7.43 -2.39 -0.02 1.61 16 35 H 0.06 1.53 7.40 -2.39 -0.02 1.52 16 36 H 0.04 1.27 5.84 -2.39 -0.01 1.26 16 37 H 0.06 1.21 6.71 -2.39 -0.02 1.20 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.41 8.87 6.29 -92.71 -0.58 8.29 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.08 1.85 6.58 -2.39 -0.02 1.83 16 45 H 0.06 2.11 6.12 -2.38 -0.01 2.09 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 48 H 0.06 3.34 6.33 -2.38 -0.02 3.32 16 49 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 50 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 51 H 0.07 2.68 7.96 -2.38 -0.02 2.66 16 52 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 53 H 0.06 1.80 6.26 -2.39 -0.01 1.78 16 Total: -1.00 -70.67 406.27 2.88 -67.80 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.31 Total: 26.51 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.54 Total: 15.16 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -3.85 Total: -107.18 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -3.15 Total: -48.09 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -70.67 2.88 -67.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108099576.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.129 kcal (2) G-P(sol) polarization free energy of solvation -70.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds