Wall clock time and date at job start Sat Apr 11 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00023 * 2 1 4 4 C 1.53007 * 109.47095 * 210.00048 * 3 2 1 5 5 C 1.53000 * 109.46694 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47403 * 60.00122 * 5 4 3 7 7 C 1.50702 * 109.47123 * 59.99529 * 6 5 4 8 8 O 1.21284 * 120.00393 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00362 * 179.97438 * 7 6 5 10 10 C 1.46492 * 120.00146 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47030 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.55364 * 59.87075 * 11 10 9 13 13 C 1.53291 * 109.51508 * 179.97438 * 11 10 9 14 14 N 1.47152 * 108.41794 * 172.24509 * 13 11 10 15 15 C 1.36936 * 120.98117 * 129.42482 * 14 13 11 16 16 H 1.07995 * 120.00160 * 333.76283 * 15 14 13 17 17 C 1.38813 * 119.99627 * 153.75840 * 15 14 13 18 18 N 1.31620 * 119.99535 * 160.00643 * 17 15 14 19 19 Si 1.86806 * 120.00325 * 340.00853 * 17 15 14 20 20 H 1.48497 * 109.47113 * 91.87032 * 19 17 15 21 21 H 1.48500 * 109.46845 * 211.86809 * 19 17 15 22 22 H 1.48495 * 109.46883 * 331.86763 * 19 17 15 23 23 C 1.47154 * 118.03608 * 309.44943 * 14 13 11 24 24 C 1.53293 * 108.38364 * 50.53018 * 23 14 13 25 25 O 1.42955 * 109.22725 * 307.69928 * 24 23 14 26 26 C 1.52998 * 109.47102 * 299.99801 * 6 5 4 27 27 C 1.52998 * 109.47275 * 60.00138 * 26 6 5 28 28 H 1.09004 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47072 * 299.99843 * 1 2 3 30 30 H 1.09000 * 109.47268 * 59.99896 * 1 2 3 31 31 H 1.08995 * 109.47598 * 330.00597 * 3 2 1 32 32 H 1.08989 * 109.46865 * 60.00439 * 4 3 2 33 33 H 1.09002 * 109.47146 * 300.00324 * 4 3 2 34 34 H 1.09002 * 109.47273 * 299.99860 * 5 4 3 35 35 H 1.09001 * 109.46794 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47290 * 179.97438 * 6 5 4 37 37 H 0.96998 * 119.99386 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.47333 * 60.00416 * 10 9 7 39 39 H 1.09000 * 109.47571 * 299.99952 * 10 9 7 40 40 H 1.08997 * 109.47308 * 180.12722 * 12 11 10 41 41 H 1.08997 * 109.47508 * 300.13204 * 12 11 10 42 42 H 1.09007 * 109.46684 * 60.12664 * 12 11 10 43 43 H 1.09000 * 109.68075 * 52.50348 * 13 11 10 44 44 H 1.09002 * 109.68387 * 291.98878 * 13 11 10 45 45 H 0.97003 * 119.99572 * 180.02562 * 18 17 15 46 46 H 1.08994 * 109.68101 * 170.26069 * 23 14 13 47 47 H 1.09003 * 109.68227 * 290.81015 * 23 14 13 48 48 H 1.09002 * 109.50904 * 67.62645 * 24 23 14 49 49 H 1.09004 * 109.51168 * 187.72015 * 24 23 14 50 50 H 1.09001 * 109.47231 * 179.97438 * 26 6 5 51 51 H 1.08995 * 109.47205 * 299.99534 * 26 6 5 52 52 H 1.09001 * 109.47240 * 180.02562 * 27 26 6 53 53 H 1.09002 * 109.47288 * 59.99948 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9815 2.6608 -0.7207 6 6 4.1890 3.1261 0.7220 7 6 5.1085 2.1663 1.4320 8 8 5.5545 1.2049 0.8422 9 7 5.4363 2.3766 2.7223 10 6 6.3307 1.4438 3.4123 11 6 6.5381 1.9091 4.8551 12 6 5.1901 1.9544 5.5774 13 6 7.4733 0.9333 5.5783 14 7 7.8055 1.4979 6.8960 15 6 7.6702 0.7525 8.0367 16 1 6.9569 -0.0577 8.0709 17 6 8.4499 1.0383 9.1490 18 7 8.0764 0.6194 10.3396 19 14 10.0291 2.0174 8.9563 20 1 9.7419 3.4621 9.1447 21 1 11.0149 1.5719 9.9736 22 1 10.5857 1.7964 7.5974 23 6 8.2869 2.8874 6.9517 24 6 7.3124 3.7686 6.1620 25 8 7.1261 3.2131 4.8580 26 6 2.8404 3.1683 1.4432 27 6 2.2178 1.7707 1.4427 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.3450 1.9994 -0.5137 32 1 3.2111 0.9314 -1.7489 33 1 4.0242 0.5692 -0.2075 34 1 3.3163 3.3551 -1.2343 35 1 4.9425 2.6307 -1.2341 36 1 4.6329 4.1217 0.7224 37 1 5.0800 3.1457 3.1940 38 1 7.2913 1.4139 2.8982 39 1 5.8873 0.4481 3.4123 40 1 5.3391 2.2881 6.6043 41 1 4.5252 2.6481 5.0628 42 1 4.7455 0.9591 5.5796 43 1 8.3850 0.7989 4.9961 44 1 6.9743 -0.0273 5.7058 45 1 8.6211 0.8194 11.1170 46 1 8.3260 3.2210 7.9886 47 1 9.2805 2.9497 6.5078 48 1 6.3548 3.8081 6.6811 49 1 7.7210 4.7754 6.0747 50 1 2.9882 3.4994 2.4712 51 1 2.1753 3.8626 0.9297 52 1 1.2568 1.8009 1.9562 53 1 2.8829 1.0765 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108167864.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:00 Heat of formation + Delta-G solvation = -108.524183 kcal Electronic energy + Delta-G solvation = -31867.549234 eV Core-core repulsion = 27739.881014 eV Total energy + Delta-G solvation = -4127.668220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -40.74804 -39.43514 -38.42414 -36.22231 -35.20160 -34.47719 -32.32639 -31.49312 -30.89132 -30.42506 -28.43336 -27.00503 -26.53949 -25.85728 -23.32704 -23.16875 -22.86612 -21.65910 -21.00731 -19.75168 -18.93326 -17.14032 -16.94616 -16.77246 -16.32325 -16.18962 -15.59422 -15.39996 -15.32337 -15.25158 -14.64032 -14.23444 -14.12081 -14.06272 -13.85849 -13.76845 -13.43158 -13.29177 -12.74596 -12.66812 -12.46023 -12.40960 -12.30848 -12.13540 -11.91852 -11.82684 -11.62132 -11.47882 -11.34910 -11.03888 -10.93821 -10.84095 -10.78706 -10.64405 -10.39116 -10.31780 -9.73921 -9.67244 -9.56590 -9.52768 -9.42646 -8.92766 -8.61143 -7.05973 -6.02489 -3.39745 2.67547 3.18941 3.24604 3.43684 3.46560 3.53211 4.00481 4.33867 4.42091 4.45163 4.60507 4.72418 4.76158 4.82642 4.97480 5.06759 5.08004 5.10277 5.13542 5.19648 5.20949 5.23179 5.27132 5.35997 5.39249 5.44580 5.54998 5.67831 5.71459 5.73985 5.75163 5.80893 5.86690 5.91305 5.94834 5.96107 6.04697 6.06381 6.20142 6.21391 6.32063 6.44136 6.46766 6.54634 6.56058 6.71205 7.02816 7.56250 7.59329 7.81022 8.22890 8.28742 8.81032 9.61793 9.97694 11.13096 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.002547 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.954168 B =10989.059602 C =11509.884186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.092 3.908 4 C -0.131 4.131 5 C -0.092 4.092 6 C -0.112 4.112 7 C 0.517 3.483 8 O -0.538 6.538 9 N -0.717 5.717 10 C 0.138 3.862 11 C 0.087 3.913 12 C -0.166 4.166 13 C 0.131 3.869 14 N -0.604 5.604 15 C -0.260 4.260 16 H 0.089 0.911 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.884 3.116 20 H -0.289 1.289 21 H -0.302 1.302 22 H -0.271 1.271 23 C 0.089 3.911 24 C 0.046 3.954 25 O -0.380 6.380 26 C -0.107 4.107 27 C -0.145 4.145 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.402 0.598 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.264 0.736 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.056 0.944 49 H 0.085 0.915 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.065 0.935 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.783 7.701 -20.377 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.034 3.966 4 C -0.168 4.168 5 C -0.130 4.130 6 C -0.133 4.133 7 C 0.303 3.697 8 O -0.416 6.416 9 N -0.369 5.369 10 C 0.014 3.986 11 C 0.046 3.954 12 C -0.223 4.223 13 C 0.004 3.996 14 N -0.328 5.328 15 C -0.388 4.388 16 H 0.106 0.894 17 C -0.175 4.175 18 N -0.550 5.550 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.196 1.196 23 C -0.037 4.037 24 C -0.032 4.032 25 O -0.299 6.299 26 C -0.145 4.145 27 C -0.183 4.183 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.237 0.763 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.103 0.897 50 H 0.090 0.910 51 H 0.093 0.907 52 H 0.084 0.916 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.249 6.879 -20.751 25.563 hybrid contribution 0.534 1.106 0.726 1.427 sum -12.715 7.985 -20.025 25.029 Atomic orbital electron populations 1.22767 0.81528 1.02624 0.99677 1.87957 1.19221 1.28042 1.95010 1.22179 0.95146 0.84102 0.95176 1.21840 0.95443 0.98617 1.00922 1.21269 1.01543 0.96279 0.93946 1.21411 0.95703 0.99589 0.96622 1.20496 0.81201 0.86290 0.81716 1.90634 1.54423 1.30645 1.65876 1.45958 1.49506 1.29481 1.11951 1.21325 0.94271 0.92696 0.90280 1.22243 0.93821 0.85649 0.93698 1.22246 0.95696 1.02089 1.02304 1.21461 0.95989 0.95223 0.86918 1.44303 1.77922 1.08160 1.02428 1.18894 1.17282 1.14490 0.88122 0.89391 1.25245 0.98234 0.98686 0.95360 1.69820 1.38394 1.48896 0.97854 0.86972 0.85379 0.78821 0.77379 1.21645 1.23061 1.19558 1.22024 0.95729 0.85907 0.99998 1.23081 0.99623 0.96324 0.84183 1.87850 1.82538 1.31285 1.28263 1.21489 0.94888 0.97326 1.00804 1.22072 1.01582 0.96901 0.97703 0.89772 0.94190 0.94285 0.92633 0.91758 0.87891 0.91510 0.90626 0.88317 0.76267 0.90876 0.90114 0.90268 0.93427 0.91775 0.94876 0.90835 0.92659 0.90115 0.94843 0.92600 0.89729 0.90965 0.90731 0.91625 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.34 10.35 -35.23 -0.36 -4.70 16 3 C 0.09 0.88 2.61 -26.72 -0.07 0.81 16 4 C -0.13 -1.38 5.28 -26.73 -0.14 -1.52 16 5 C -0.09 -0.80 5.09 -26.73 -0.14 -0.94 16 6 C -0.11 -0.97 3.01 -91.77 -0.28 -1.25 16 7 C 0.52 6.32 5.64 -10.98 -0.06 6.26 16 8 O -0.54 -8.42 13.66 5.55 0.08 -8.34 16 9 N -0.72 -8.59 5.05 -60.29 -0.30 -8.90 16 10 C 0.14 1.95 4.82 -4.04 -0.02 1.93 16 11 C 0.09 1.37 0.76 -90.46 -0.07 1.31 16 12 C -0.17 -2.47 7.93 37.16 0.29 -2.18 16 13 C 0.13 2.51 5.40 -3.54 -0.02 2.49 16 14 N -0.60 -13.82 2.35 -171.83 -0.40 -14.22 16 15 C -0.26 -7.01 10.10 -15.06 -0.15 -7.16 16 16 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 17 C 0.02 0.67 5.26 -17.43 -0.09 0.58 16 18 N -0.91 -27.20 13.97 55.49 0.78 -26.42 16 19 Si 0.88 22.00 24.29 -169.99 -4.13 17.87 16 20 H -0.29 -6.85 6.58 56.52 0.37 -6.47 16 21 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 22 H -0.27 -6.71 6.55 56.52 0.37 -6.34 16 23 C 0.09 1.88 4.38 -3.53 -0.02 1.86 16 24 C 0.05 0.78 6.60 37.31 0.25 1.02 16 25 O -0.38 -6.31 9.99 -35.23 -0.35 -6.66 16 26 C -0.11 -0.79 5.36 -26.73 -0.14 -0.93 16 27 C -0.14 -1.34 5.32 -26.73 -0.14 -1.48 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 30 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 31 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 32 H 0.06 0.64 8.14 -51.94 -0.42 0.22 16 33 H 0.10 1.42 5.51 -51.93 -0.29 1.13 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 4.24 6.62 -40.82 -0.27 3.97 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.39 6.11 -51.93 -0.32 1.07 16 41 H 0.05 0.59 6.86 -51.93 -0.36 0.23 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.38 7.95 -51.93 -0.41 0.97 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 1.83 4.61 -51.93 -0.24 1.60 16 47 H 0.03 0.73 6.87 -51.93 -0.36 0.37 16 48 H 0.06 0.93 6.25 -51.93 -0.32 0.61 16 49 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 50 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 51 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 53 H 0.07 0.88 7.22 -51.93 -0.37 0.50 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -32.10 391.30 -7.75 -39.85 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -9.24 Total: 3.49 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 0.30 Total: 2.14 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.07 Total: -49.54 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.64 Total: -19.70 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.13 Total: 17.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.10 -7.75 -39.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108167864.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.678 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds