Wall clock time and date at job start Sat Apr 11 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00023 * 2 1 4 4 C 1.53007 * 109.47095 * 210.00048 * 3 2 1 5 5 C 1.53000 * 109.46694 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47403 * 60.00122 * 5 4 3 7 7 C 1.50702 * 109.47123 * 59.99529 * 6 5 4 8 8 O 1.21284 * 120.00393 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00362 * 179.97438 * 7 6 5 10 10 C 1.46492 * 120.00146 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47030 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.55364 * 59.87075 * 11 10 9 13 13 C 1.53291 * 109.51508 * 179.97438 * 11 10 9 14 14 N 1.47152 * 108.41794 * 172.24509 * 13 11 10 15 15 C 1.36936 * 120.98117 * 129.42482 * 14 13 11 16 16 H 1.07995 * 120.00160 * 333.76283 * 15 14 13 17 17 C 1.38813 * 119.99627 * 153.75840 * 15 14 13 18 18 N 1.31620 * 119.99535 * 160.00643 * 17 15 14 19 19 Si 1.86806 * 120.00325 * 340.00853 * 17 15 14 20 20 H 1.48497 * 109.47113 * 91.87032 * 19 17 15 21 21 H 1.48500 * 109.46845 * 211.86809 * 19 17 15 22 22 H 1.48495 * 109.46883 * 331.86763 * 19 17 15 23 23 C 1.47154 * 118.03608 * 309.44943 * 14 13 11 24 24 C 1.53293 * 108.38364 * 50.53018 * 23 14 13 25 25 O 1.42955 * 109.22725 * 307.69928 * 24 23 14 26 26 C 1.52998 * 109.47102 * 299.99801 * 6 5 4 27 27 C 1.52998 * 109.47275 * 60.00138 * 26 6 5 28 28 H 1.09004 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47072 * 299.99843 * 1 2 3 30 30 H 1.09000 * 109.47268 * 59.99896 * 1 2 3 31 31 H 1.08995 * 109.47598 * 330.00597 * 3 2 1 32 32 H 1.08989 * 109.46865 * 60.00439 * 4 3 2 33 33 H 1.09002 * 109.47146 * 300.00324 * 4 3 2 34 34 H 1.09002 * 109.47273 * 299.99860 * 5 4 3 35 35 H 1.09001 * 109.46794 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47290 * 179.97438 * 6 5 4 37 37 H 0.96998 * 119.99386 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.47333 * 60.00416 * 10 9 7 39 39 H 1.09000 * 109.47571 * 299.99952 * 10 9 7 40 40 H 1.08997 * 109.47308 * 180.12722 * 12 11 10 41 41 H 1.08997 * 109.47508 * 300.13204 * 12 11 10 42 42 H 1.09007 * 109.46684 * 60.12664 * 12 11 10 43 43 H 1.09000 * 109.68075 * 52.50348 * 13 11 10 44 44 H 1.09002 * 109.68387 * 291.98878 * 13 11 10 45 45 H 0.97003 * 119.99572 * 180.02562 * 18 17 15 46 46 H 1.08994 * 109.68101 * 170.26069 * 23 14 13 47 47 H 1.09003 * 109.68227 * 290.81015 * 23 14 13 48 48 H 1.09002 * 109.50904 * 67.62645 * 24 23 14 49 49 H 1.09004 * 109.51168 * 187.72015 * 24 23 14 50 50 H 1.09001 * 109.47231 * 179.97438 * 26 6 5 51 51 H 1.08995 * 109.47205 * 299.99534 * 26 6 5 52 52 H 1.09001 * 109.47240 * 180.02562 * 27 26 6 53 53 H 1.09002 * 109.47288 * 59.99948 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9815 2.6608 -0.7207 6 6 4.1890 3.1261 0.7220 7 6 5.1085 2.1663 1.4320 8 8 5.5545 1.2049 0.8422 9 7 5.4363 2.3766 2.7223 10 6 6.3307 1.4438 3.4123 11 6 6.5381 1.9091 4.8551 12 6 5.1901 1.9544 5.5774 13 6 7.4733 0.9333 5.5783 14 7 7.8055 1.4979 6.8960 15 6 7.6702 0.7525 8.0367 16 1 6.9569 -0.0577 8.0709 17 6 8.4499 1.0383 9.1490 18 7 8.0764 0.6194 10.3396 19 14 10.0291 2.0174 8.9563 20 1 9.7419 3.4621 9.1447 21 1 11.0149 1.5719 9.9736 22 1 10.5857 1.7964 7.5974 23 6 8.2869 2.8874 6.9517 24 6 7.3124 3.7686 6.1620 25 8 7.1261 3.2131 4.8580 26 6 2.8404 3.1683 1.4432 27 6 2.2178 1.7707 1.4427 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.3450 1.9994 -0.5137 32 1 3.2111 0.9314 -1.7489 33 1 4.0242 0.5692 -0.2075 34 1 3.3163 3.3551 -1.2343 35 1 4.9425 2.6307 -1.2341 36 1 4.6329 4.1217 0.7224 37 1 5.0800 3.1457 3.1940 38 1 7.2913 1.4139 2.8982 39 1 5.8873 0.4481 3.4123 40 1 5.3391 2.2881 6.6043 41 1 4.5252 2.6481 5.0628 42 1 4.7455 0.9591 5.5796 43 1 8.3850 0.7989 4.9961 44 1 6.9743 -0.0273 5.7058 45 1 8.6211 0.8194 11.1170 46 1 8.3260 3.2210 7.9886 47 1 9.2805 2.9497 6.5078 48 1 6.3548 3.8081 6.6811 49 1 7.7210 4.7754 6.0747 50 1 2.9882 3.4994 2.4712 51 1 2.1753 3.8626 0.9297 52 1 1.2568 1.8009 1.9562 53 1 2.8829 1.0765 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108167864.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:59 Heat of formation + Delta-G solvation = -131.564699 kcal Electronic energy + Delta-G solvation = -31868.548346 eV Core-core repulsion = 27739.881014 eV Total energy + Delta-G solvation = -4128.667332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.65944 -40.75740 -39.29242 -37.08340 -36.64680 -35.87261 -33.79589 -33.27776 -31.62382 -31.20029 -29.94238 -28.14996 -27.72295 -27.07887 -24.82088 -24.23486 -23.61769 -23.00786 -21.96219 -20.82592 -20.21138 -18.96619 -17.86961 -17.67049 -17.48805 -17.31234 -17.11127 -16.45914 -16.17310 -16.06481 -16.00331 -15.81635 -15.53963 -15.35697 -15.02277 -14.72741 -14.51920 -14.20802 -14.01510 -13.99431 -13.78622 -13.46974 -13.31552 -13.25308 -13.09233 -12.97270 -12.84523 -12.60097 -12.51273 -12.35008 -12.14991 -12.10404 -11.99631 -11.70680 -11.57113 -11.44863 -11.34681 -11.27665 -11.05886 -10.56507 -10.43497 -10.35605 -9.98109 -8.96326 -8.19895 -5.53062 1.25218 1.39796 1.47657 1.75159 2.22011 2.37103 2.67400 2.87873 3.00580 3.20460 3.65263 3.73846 3.79355 3.87486 3.92513 3.97234 4.09089 4.18559 4.25104 4.28919 4.29575 4.41412 4.45298 4.48813 4.52303 4.55660 4.56141 4.60577 4.65627 4.67279 4.75049 4.81403 4.84093 4.85041 4.93215 4.94407 5.01087 5.04257 5.06833 5.10043 5.22780 5.26845 5.34648 5.35819 5.42502 5.61418 5.77147 6.07571 6.22319 6.37457 6.63996 6.80886 7.36055 7.53351 7.93846 8.99532 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.002547 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.954168 B =10989.059602 C =11509.884186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.090 3.910 4 C -0.132 4.132 5 C -0.090 4.090 6 C -0.106 4.106 7 C 0.512 3.488 8 O -0.578 6.578 9 N -0.710 5.710 10 C 0.149 3.851 11 C 0.100 3.900 12 C -0.158 4.158 13 C 0.124 3.876 14 N -0.616 5.616 15 C -0.245 4.245 16 H 0.057 0.943 17 C -0.032 4.032 18 N -0.954 5.954 19 Si 0.945 3.055 20 H -0.267 1.267 21 H -0.312 1.312 22 H -0.270 1.270 23 C 0.080 3.920 24 C 0.055 3.945 25 O -0.375 6.375 26 C -0.102 4.102 27 C -0.144 4.144 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.127 0.873 37 H 0.412 0.588 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.262 0.738 46 H 0.065 0.935 47 H 0.032 0.968 48 H 0.061 0.939 49 H 0.120 0.880 50 H 0.082 0.918 51 H 0.105 0.895 52 H 0.075 0.925 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.115 11.074 -22.435 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C 0.033 3.967 4 C -0.169 4.169 5 C -0.128 4.128 6 C -0.127 4.127 7 C 0.300 3.700 8 O -0.458 6.458 9 N -0.362 5.362 10 C 0.024 3.976 11 C 0.059 3.941 12 C -0.216 4.216 13 C -0.002 4.002 14 N -0.341 5.341 15 C -0.374 4.374 16 H 0.075 0.925 17 C -0.227 4.227 18 N -0.600 5.600 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.241 1.241 22 H -0.195 1.195 23 C -0.044 4.044 24 C -0.023 4.023 25 O -0.294 6.294 26 C -0.139 4.139 27 C -0.182 4.182 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.145 0.855 37 H 0.250 0.750 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.050 0.950 48 H 0.079 0.921 49 H 0.138 0.862 50 H 0.101 0.899 51 H 0.123 0.877 52 H 0.093 0.907 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.601 10.298 -22.849 29.005 hybrid contribution 0.883 -0.070 1.288 1.563 sum -13.718 10.228 -21.561 27.526 Atomic orbital electron populations 1.22934 0.79904 1.03416 1.00834 1.87920 1.21196 1.29400 1.95212 1.22264 0.94844 0.84037 0.95544 1.21793 0.95590 0.99136 1.00394 1.21290 1.01502 0.95670 0.94304 1.21490 0.95678 0.99505 0.95996 1.21267 0.80994 0.86294 0.81413 1.90637 1.55938 1.32509 1.66698 1.45854 1.49009 1.29308 1.12073 1.21037 0.94338 0.93098 0.89177 1.22035 0.93244 0.84534 0.94268 1.22162 0.95656 1.02832 1.00920 1.21634 0.96770 0.96199 0.85611 1.44374 1.78161 1.09083 1.02471 1.18811 1.15645 1.13521 0.89425 0.92542 1.25830 1.01047 1.00813 0.95040 1.69943 1.39710 1.51725 0.98655 0.85970 0.81147 0.78721 0.76707 1.19337 1.24130 1.19465 1.22137 0.96921 0.85434 0.99949 1.23049 0.98817 0.96806 0.83624 1.87871 1.82479 1.31087 1.27980 1.21532 0.94206 0.96470 1.01729 1.22059 1.01459 0.97490 0.97157 0.89361 0.93310 0.92716 0.90133 0.91951 0.91812 0.88250 0.91842 0.85548 0.75042 0.92062 0.90542 0.92802 0.90212 0.91954 0.95032 0.91375 0.92853 0.91707 0.94993 0.92100 0.86187 0.89898 0.87676 0.90659 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 113.37 1.23 1.58 16 2 O -0.42 -9.20 10.35 -148.98 -1.54 -10.74 16 3 C 0.09 1.58 2.61 30.60 0.08 1.66 16 4 C -0.13 -2.68 5.28 30.60 0.16 -2.52 16 5 C -0.09 -1.34 5.09 30.59 0.16 -1.18 16 6 C -0.11 -1.49 3.01 -11.54 -0.03 -1.53 16 7 C 0.51 11.81 5.64 87.66 0.49 12.31 16 8 O -0.58 -18.28 13.66 -3.04 -0.04 -18.33 16 9 N -0.71 -15.59 5.05 -463.06 -2.34 -17.93 16 10 C 0.15 4.06 4.82 86.38 0.42 4.48 16 11 C 0.10 3.03 0.76 -10.69 -0.01 3.02 16 12 C -0.16 -4.48 7.93 71.98 0.57 -3.91 16 13 C 0.12 4.76 5.40 86.35 0.47 5.23 16 14 N -0.62 -28.20 2.35 -697.55 -1.64 -29.84 16 15 C -0.24 -13.54 10.10 84.03 0.85 -12.69 16 16 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 17 C -0.03 -1.85 5.26 84.86 0.45 -1.41 16 18 N -0.95 -58.97 13.97 21.65 0.30 -58.67 16 19 Si 0.95 45.95 24.29 68.60 1.67 47.61 16 20 H -0.27 -11.93 6.58 99.48 0.65 -11.27 16 21 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 22 H -0.27 -12.90 6.55 99.48 0.65 -12.25 16 23 C 0.08 3.27 4.38 86.35 0.38 3.65 16 24 C 0.05 1.69 6.60 72.08 0.48 2.17 16 25 O -0.38 -11.39 9.99 -148.98 -1.49 -12.88 16 26 C -0.10 -1.09 5.36 30.59 0.16 -0.92 16 27 C -0.14 -2.36 5.32 30.60 0.16 -2.20 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 0.58 7.87 -2.39 -0.02 0.56 16 30 H 0.05 0.57 8.09 -2.39 -0.02 0.56 16 31 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.83 5.51 -2.39 -0.01 1.82 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.41 7.28 6.62 -92.71 -0.61 6.66 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.83 6.11 -2.39 -0.01 1.81 16 41 H 0.08 1.73 6.86 -2.39 -0.02 1.71 16 42 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 2.64 7.95 -2.39 -0.02 2.63 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.06 2.85 4.61 -2.39 -0.01 2.84 16 47 H 0.03 1.32 6.87 -2.39 -0.02 1.30 16 48 H 0.06 1.86 6.25 -2.39 -0.01 1.85 16 49 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 50 H 0.08 0.75 7.56 -2.39 -0.02 0.73 16 51 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.07 1.07 7.87 -2.39 -0.02 1.05 16 53 H 0.04 0.95 7.22 -2.39 -0.02 0.93 16 Total: -1.00 -73.24 391.30 1.10 -72.15 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.18 Total: 20.89 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.00 Total: 7.73 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.68 Total: -106.44 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -3.07 Total: -41.94 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.61 kcal Total: -73.24 1.10 -72.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108167864.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.416 kcal (2) G-P(sol) polarization free energy of solvation -73.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds