Wall clock time and date at job start Sat Apr 11 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.51467 * 2 1 4 4 N 1.46512 * 109.46814 * 304.89624 * 3 2 1 5 5 C 1.34771 * 119.99872 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00268 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99908 * 180.02562 * 5 4 3 8 8 C 1.53006 * 109.47306 * 179.97438 * 7 5 4 9 9 C 1.52990 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.09006 * 109.48331 * 55.00196 * 9 8 7 11 11 C 1.53092 * 109.48074 * 175.02616 * 9 8 7 12 12 C 1.53175 * 109.16387 * 177.59492 * 11 9 8 13 13 C 1.53182 * 109.03579 * 303.01617 * 12 11 9 14 14 C 1.53093 * 109.16076 * 56.97963 * 13 12 11 15 15 O 1.42897 * 109.42573 * 302.40147 * 14 13 12 16 16 C 1.52880 * 109.40774 * 120.12033 * 2 1 3 17 17 N 1.47153 * 108.60477 * 67.83958 * 16 2 1 18 18 C 1.36941 * 120.97852 * 230.49937 * 17 16 2 19 19 H 1.07997 * 120.00475 * 26.04358 * 18 17 16 20 20 C 1.38816 * 119.99586 * 206.04164 * 18 17 16 21 21 N 1.31619 * 120.00366 * 17.04483 * 20 18 17 22 22 Si 1.86800 * 119.99783 * 197.04989 * 20 18 17 23 23 H 1.48499 * 109.47529 * 84.88992 * 22 20 18 24 24 H 1.48503 * 109.46958 * 324.88821 * 22 20 18 25 25 H 1.48503 * 109.47124 * 204.89197 * 22 20 18 26 26 C 1.47150 * 118.03679 * 50.23227 * 17 16 2 27 27 C 1.53296 * 108.38239 * 309.71043 * 26 17 16 28 28 O 1.42955 * 109.51316 * 239.89388 * 2 1 3 29 29 H 1.08997 * 109.47215 * 180.10042 * 1 2 3 30 30 H 1.09005 * 109.47109 * 300.10646 * 1 2 3 31 31 H 1.09008 * 109.47030 * 60.10449 * 1 2 3 32 32 H 1.08998 * 109.47368 * 64.89017 * 3 2 1 33 33 H 1.08998 * 109.47231 * 184.90366 * 3 2 1 34 34 H 0.96994 * 119.99951 * 0.02562 * 4 3 2 35 35 H 1.08995 * 109.47034 * 299.99610 * 7 5 4 36 36 H 1.09003 * 109.47323 * 60.00005 * 7 5 4 37 37 H 1.09000 * 109.46746 * 300.00138 * 8 7 5 38 38 H 1.09004 * 109.46881 * 59.99676 * 8 7 5 39 39 H 1.09005 * 109.52053 * 297.49792 * 11 9 8 40 40 H 1.08999 * 109.52515 * 57.68184 * 11 9 8 41 41 H 1.09000 * 109.55136 * 62.88317 * 12 11 9 42 42 H 1.09001 * 109.54683 * 183.06288 * 12 11 9 43 43 H 1.08999 * 109.52244 * 176.88752 * 13 12 11 44 44 H 1.08998 * 109.52387 * 297.07596 * 13 12 11 45 45 H 1.09006 * 109.47747 * 62.37857 * 14 13 12 46 46 H 1.09000 * 109.47735 * 182.39774 * 14 13 12 47 47 H 1.08998 * 109.61705 * 308.02206 * 16 2 1 48 48 H 1.08995 * 109.52497 * 187.60813 * 16 2 1 49 49 H 0.96998 * 120.00249 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.68286 * 69.43260 * 26 17 16 51 51 H 1.09000 * 109.68489 * 189.95280 * 26 17 16 52 52 H 1.09000 * 109.51103 * 172.22762 * 27 26 17 53 53 H 1.09004 * 109.51235 * 292.38337 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4593 2.1663 -1.1330 5 6 1.7695 3.4622 -1.3353 6 8 2.5299 4.0289 -0.5792 7 6 1.1707 4.2073 -2.5003 8 6 1.6819 5.6494 -2.5005 9 6 1.0744 6.4057 -3.6836 10 1 -0.0123 6.3298 -3.6442 11 6 1.4863 7.8785 -3.6138 12 6 0.9246 8.6160 -4.8332 13 6 1.4287 7.9311 -6.1073 14 6 1.0191 6.4563 -6.0807 15 8 1.5478 5.8373 -4.9062 16 6 2.0380 -0.7236 1.2472 17 7 1.6978 -2.1507 1.1333 18 6 1.0635 -2.8078 2.1537 19 1 0.4423 -2.2588 2.8458 20 6 1.2189 -4.1796 2.2983 21 7 2.2107 -4.7971 1.6922 22 14 0.0204 -5.1492 3.3531 23 1 -1.1710 -5.5108 2.5438 24 1 -0.4009 -4.3215 4.5119 25 1 0.6803 -6.3863 3.8424 26 6 2.0540 -2.8494 -0.1118 27 6 1.5405 -2.0209 -1.2950 28 8 2.0075 -0.6759 -1.1657 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3633 0.5155 0.8891 31 1 -0.3633 0.5122 -0.8910 32 1 1.7514 1.9303 0.9305 33 1 3.1275 1.4425 -0.0878 34 1 0.8510 1.7132 -1.7374 35 1 1.4596 3.7190 -3.4310 36 1 0.0843 4.2073 -2.4119 37 1 1.3927 6.1374 -1.5697 38 1 2.7683 5.6498 -2.5886 39 1 1.0883 8.3252 -2.7027 40 1 2.5738 7.9529 -3.6121 41 1 -0.1647 8.5842 -4.8088 42 1 1.2595 9.6532 -4.8183 43 1 0.9895 8.4156 -6.9793 44 1 2.5150 8.0066 -6.1560 45 1 -0.0684 6.3811 -6.0729 46 1 1.4118 5.9540 -6.9647 47 1 1.5631 -0.3026 2.1334 48 1 3.1194 -0.6086 1.3200 49 1 2.3191 -5.7558 1.7929 50 1 3.1371 -2.9520 -0.1782 51 1 1.5903 -3.8358 -0.1249 52 1 1.9121 -2.4475 -2.2266 53 1 0.4505 -2.0290 -1.2992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108251285.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:07 Heat of formation + Delta-G solvation = -143.427771 kcal Electronic energy + Delta-G solvation = -30421.829422 eV Core-core repulsion = 26292.647668 eV Total energy + Delta-G solvation = -4129.181754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.18001 -40.48626 -39.97236 -36.62612 -35.85239 -34.87768 -34.49895 -33.60416 -32.69967 -31.03594 -29.78354 -28.15514 -27.55920 -26.14806 -24.92217 -24.68013 -23.15611 -22.39815 -21.33622 -21.04164 -20.21022 -18.90239 -18.17841 -17.56902 -17.41272 -16.97125 -16.80667 -16.64429 -16.28749 -16.09560 -15.61507 -15.54455 -15.40654 -15.21890 -15.07488 -14.67081 -14.54865 -14.39930 -14.33817 -13.73342 -13.57030 -13.40108 -13.09447 -12.99687 -12.90333 -12.77826 -12.76017 -12.56769 -12.41709 -12.12331 -12.09415 -12.05823 -12.02008 -11.85021 -11.80942 -11.54846 -11.17625 -11.15242 -10.83955 -10.76079 -10.48905 -10.29549 -10.05210 -8.72366 -7.89661 -5.36341 1.47378 1.48040 1.56694 1.71014 2.22232 2.49239 2.78682 2.89808 3.24982 3.49148 3.69240 3.80820 3.90019 3.97018 3.98071 4.01645 4.07113 4.09914 4.19527 4.35795 4.39722 4.45764 4.50303 4.51163 4.61153 4.63232 4.69595 4.70905 4.73450 4.77850 4.81668 4.88033 4.90663 4.96674 5.01077 5.05249 5.06853 5.12396 5.17226 5.22446 5.23202 5.31027 5.40275 5.43488 5.47597 5.56511 5.62966 6.28775 6.36859 6.38914 6.60957 7.07396 7.30310 7.75695 8.29954 9.16255 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031922 B = 0.001821 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.917624 B =15374.822021 C =15648.067987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 C 0.147 3.853 4 N -0.711 5.711 5 C 0.508 3.492 6 O -0.590 6.590 7 C -0.127 4.127 8 C -0.093 4.093 9 C 0.093 3.907 10 H 0.074 0.926 11 C -0.152 4.152 12 C -0.122 4.122 13 C -0.157 4.157 14 C 0.054 3.946 15 O -0.400 6.400 16 C 0.122 3.878 17 N -0.604 5.604 18 C -0.259 4.259 19 H 0.073 0.927 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.281 1.281 24 H -0.270 1.270 25 H -0.298 1.298 26 C 0.144 3.856 27 C 0.050 3.950 28 O -0.385 6.385 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.414 0.586 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.070 0.930 48 H 0.009 0.991 49 H 0.250 0.750 50 H -0.006 1.006 51 H 0.067 0.933 52 H 0.104 0.896 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.071 24.296 -16.179 30.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.057 3.943 3 C 0.022 3.978 4 N -0.364 5.364 5 C 0.296 3.704 6 O -0.471 6.471 7 C -0.167 4.167 8 C -0.130 4.130 9 C 0.035 3.965 10 H 0.092 0.908 11 C -0.190 4.190 12 C -0.159 4.159 13 C -0.194 4.194 14 C -0.022 4.022 15 O -0.320 6.320 16 C -0.004 4.004 17 N -0.328 5.328 18 C -0.389 4.389 19 H 0.090 0.910 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.798 3.202 23 H -0.208 1.208 24 H -0.195 1.195 25 H -0.225 1.225 26 C 0.019 3.981 27 C -0.027 4.027 28 O -0.305 6.305 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.251 0.749 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.027 0.973 49 H 0.060 0.940 50 H 0.012 0.988 51 H 0.086 0.914 52 H 0.122 0.878 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.248 24.451 -15.746 29.972 hybrid contribution -0.313 -1.294 0.768 1.537 sum -7.561 23.157 -14.978 28.597 Atomic orbital electron populations 1.22170 0.93702 1.02755 1.02887 1.21981 0.94867 0.90626 0.86816 1.21069 0.97813 0.88558 0.90356 1.45929 1.48966 1.11161 1.30296 1.21366 0.80611 0.81716 0.86677 1.90678 1.38209 1.68776 1.49419 1.21625 1.03082 0.95819 0.96139 1.21315 1.00804 0.93812 0.97116 1.22153 0.98113 0.92195 0.84004 0.90765 1.22211 1.01527 0.95506 0.99774 1.21603 1.01063 0.99554 0.93714 1.22195 1.01680 0.96469 0.99077 1.22721 0.98617 0.93073 0.87785 1.87927 1.70839 1.58962 1.14256 1.21504 0.96707 0.85526 0.96678 1.44213 1.68738 1.05548 1.14318 1.19510 1.20751 0.91049 1.07591 0.90979 1.25809 0.98800 0.98958 1.01108 1.70196 1.30495 1.08948 1.48620 0.85242 0.78480 0.77757 0.78696 1.20767 1.19455 1.22470 1.21289 0.95804 0.96120 0.84930 1.23182 0.98841 0.81976 0.98745 1.87843 1.73323 1.26190 1.43118 0.92611 0.91124 0.90392 0.89753 0.92818 0.74902 0.87535 0.86213 0.89874 0.92721 0.89950 0.92289 0.90886 0.90903 0.89413 0.92153 0.92111 0.88354 0.91202 0.97263 0.94046 0.98771 0.91441 0.87771 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 7.85 71.98 0.57 -3.94 16 2 C 0.10 3.25 0.78 -10.83 -0.01 3.24 16 3 C 0.15 4.37 4.85 86.38 0.42 4.79 16 4 N -0.71 -17.26 5.19 -463.05 -2.40 -19.66 16 5 C 0.51 12.84 7.83 87.66 0.69 13.53 16 6 O -0.59 -19.94 15.98 -3.04 -0.05 -19.98 16 7 C -0.13 -2.16 5.60 29.85 0.17 -2.00 16 8 C -0.09 -1.67 4.21 30.59 0.13 -1.54 16 9 C 0.09 1.33 2.64 30.62 0.08 1.41 16 10 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 11 C -0.15 -1.94 5.42 30.68 0.17 -1.77 16 12 C -0.12 -1.18 6.03 30.71 0.19 -0.99 16 13 C -0.16 -1.55 6.14 30.69 0.19 -1.36 16 14 C 0.05 0.62 6.84 72.01 0.49 1.12 16 15 O -0.40 -6.85 9.94 -148.98 -1.48 -8.33 16 16 C 0.12 5.09 5.37 86.21 0.46 5.55 16 17 N -0.60 -29.82 2.58 -698.35 -1.80 -31.61 16 18 C -0.26 -13.87 9.65 84.03 0.81 -13.06 16 19 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 20 C -0.05 -2.82 4.94 84.86 0.42 -2.40 16 21 N -0.94 -54.88 11.15 21.65 0.24 -54.64 16 22 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 26 C 0.14 6.92 5.45 86.35 0.47 7.39 16 27 C 0.05 1.83 6.60 72.08 0.48 2.31 16 28 O -0.39 -13.75 10.17 -148.98 -1.52 -15.27 16 29 H 0.05 1.88 6.12 -2.39 -0.01 1.87 16 30 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.08 1.73 6.59 -2.38 -0.02 1.71 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.41 8.24 7.00 -92.71 -0.65 7.59 16 35 H 0.11 1.75 7.82 -2.39 -0.02 1.73 16 36 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.49 8.10 -2.39 -0.02 1.48 16 38 H 0.05 1.25 8.10 -2.38 -0.02 1.23 16 39 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.07 2.76 7.95 -2.39 -0.02 2.74 16 48 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 50 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 51 H 0.07 3.57 6.15 -2.39 -0.01 3.56 16 52 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 53 H 0.06 2.03 6.25 -2.38 -0.01 2.01 16 Total: -1.00 -69.51 406.65 0.96 -68.54 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.23 Total: 22.67 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.71 Total: 12.28 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.96 Total: -105.92 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -3.05 Total: -43.58 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.51 0.96 -68.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108251285.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.883 kcal (2) G-P(sol) polarization free energy of solvation -69.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds