Wall clock time and date at job start Sat Apr 11 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.51264 * 2 1 4 4 N 1.46511 * 109.46688 * 59.90282 * 3 2 1 5 5 C 1.34773 * 119.99660 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00622 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99676 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.47123 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47200 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.52175 * 55.12067 * 9 8 7 11 11 C 1.53177 * 109.52412 * 175.31088 * 9 8 7 12 12 C 1.53176 * 109.04005 * 176.88622 * 11 9 8 13 13 C 1.53092 * 109.16116 * 303.02083 * 12 11 9 14 14 O 1.42906 * 109.41751 * 57.60530 * 13 12 11 15 15 C 1.42906 * 114.09576 * 298.84462 * 14 13 12 16 16 C 1.53305 * 109.51270 * 239.90524 * 2 1 3 17 17 N 1.47153 * 108.38117 * 292.32487 * 16 2 1 18 18 C 1.36937 * 120.98344 * 129.44135 * 17 16 2 19 19 H 1.08007 * 119.99657 * 333.66082 * 18 17 16 20 20 C 1.38812 * 120.00149 * 153.65563 * 18 17 16 21 21 N 1.31608 * 120.00041 * 334.96609 * 20 18 17 22 22 Si 1.86804 * 119.99759 * 154.96275 * 20 18 17 23 23 H 1.48504 * 109.47099 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46978 * 240.00020 * 22 20 18 25 25 H 1.48505 * 109.47009 * 120.00164 * 22 20 18 26 26 C 1.47154 * 118.03853 * 309.71667 * 17 16 2 27 27 C 1.52877 * 108.60853 * 50.22658 * 26 17 16 28 28 O 1.42956 * 109.55848 * 120.13321 * 2 1 3 29 29 H 1.09004 * 109.46437 * 180.09922 * 1 2 3 30 30 H 1.08999 * 109.47094 * 300.09138 * 1 2 3 31 31 H 1.08996 * 109.47387 * 60.09713 * 1 2 3 32 32 H 1.09001 * 109.47227 * 179.89582 * 3 2 1 33 33 H 1.08993 * 109.47632 * 299.90450 * 3 2 1 34 34 H 0.96995 * 119.99679 * 359.97438 * 4 3 2 35 35 H 1.09001 * 109.47176 * 299.99504 * 7 5 4 36 36 H 1.08992 * 109.47344 * 60.00247 * 7 5 4 37 37 H 1.09001 * 109.46785 * 299.99328 * 8 7 5 38 38 H 1.08993 * 109.47655 * 59.99939 * 8 7 5 39 39 H 1.09003 * 109.54375 * 296.75567 * 11 9 8 40 40 H 1.09000 * 109.54430 * 57.01495 * 11 9 8 41 41 H 1.08998 * 109.52555 * 183.11189 * 12 11 9 42 42 H 1.08995 * 109.57161 * 62.95050 * 12 11 9 43 43 H 1.09003 * 109.48224 * 297.62744 * 13 12 11 44 44 H 1.08993 * 109.48522 * 177.59023 * 13 12 11 45 45 H 1.08994 * 109.48116 * 301.17132 * 15 14 13 46 46 H 1.09000 * 109.47949 * 181.13825 * 15 14 13 47 47 H 1.08995 * 109.68083 * 172.60201 * 16 2 1 48 48 H 1.08992 * 109.71074 * 52.06571 * 16 2 1 49 49 H 0.97006 * 120.00245 * 354.23460 * 21 20 18 50 50 H 1.08997 * 109.68421 * 170.01151 * 26 17 16 51 51 H 1.09000 * 109.68138 * 290.56353 * 26 17 16 52 52 H 1.08999 * 109.58500 * 187.92992 * 27 26 17 53 53 H 1.09004 * 109.41073 * 67.83873 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5512 2.1337 1.1951 5 6 1.8778 3.4237 1.4085 6 8 2.5767 4.0123 0.6110 7 6 1.3735 4.1353 2.6375 8 6 1.8846 5.5774 2.6376 9 6 1.3731 6.2996 3.8857 10 1 1.6610 5.7387 4.7748 11 6 1.9781 7.7055 3.9476 12 6 1.3993 8.4458 5.1573 13 6 -0.1273 8.4746 5.0455 14 8 -0.6228 7.1368 4.9608 15 6 -0.1524 6.4114 3.8230 16 6 2.0421 -0.7246 -1.2502 17 7 1.6971 -2.1504 -1.1342 18 6 1.0619 -2.8072 -2.1541 19 1 0.4395 -2.2580 -2.8452 20 6 1.2180 -4.1788 -2.2999 21 7 2.2940 -4.7724 -1.8287 22 14 -0.0993 -5.1820 -3.1648 23 1 -1.1998 -4.2844 -3.5989 24 1 -0.6339 -6.2060 -2.2317 25 1 0.4891 -5.8530 -4.3518 26 6 2.0492 -2.8480 0.1127 27 6 1.5417 -2.0214 1.2943 28 8 2.0086 -0.6762 1.1650 29 1 -0.3632 -1.0277 0.0018 30 1 -0.3633 0.5152 0.8892 31 1 -0.3634 0.5123 -0.8908 32 1 3.1311 1.4413 0.0019 33 1 1.6796 1.9557 -0.8907 34 1 0.9919 1.6631 1.8327 35 1 0.2835 4.1366 2.6350 36 1 1.7342 3.6215 3.5285 37 1 2.9746 5.5765 2.6400 38 1 1.5235 6.0910 1.7467 39 1 3.0609 7.6324 4.0488 40 1 1.7318 8.2490 3.0355 41 1 1.7823 9.4660 5.1776 42 1 1.6877 7.9301 6.0732 43 1 -0.4159 9.0263 4.1508 44 1 -0.5471 8.9626 5.9250 45 1 -0.4413 6.9362 2.9124 46 1 -0.5902 5.4132 3.8219 47 1 3.1240 -0.6133 -1.3217 48 1 1.5703 -0.3038 -2.1381 49 1 3.0156 -4.2429 -1.4547 50 1 1.5818 -3.8326 0.1271 51 1 3.1319 -2.9542 0.1808 52 1 1.9142 -2.4481 2.2256 53 1 0.4517 -2.0293 1.3004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108312180.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:33 Heat of formation + Delta-G solvation = -148.159979 kcal Electronic energy + Delta-G solvation = -30467.583720 eV Core-core repulsion = 26338.196762 eV Total energy + Delta-G solvation = -4129.386957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27002 -40.58435 -40.03918 -36.94322 -36.15896 -35.81289 -33.82158 -33.53890 -32.64090 -30.74086 -29.89623 -28.08411 -27.18467 -25.98092 -25.47546 -25.11269 -23.14923 -22.42039 -21.24550 -20.99709 -20.29437 -19.55324 -18.26325 -17.59632 -17.32890 -17.00350 -16.92738 -16.56837 -16.33574 -16.16624 -15.73265 -15.72732 -15.59071 -15.38243 -15.14598 -14.73055 -14.63132 -14.49691 -14.31686 -13.89947 -13.56440 -13.53696 -13.22272 -13.10414 -13.04152 -12.80296 -12.72433 -12.50343 -12.26791 -12.23200 -12.15592 -12.05967 -11.89532 -11.77078 -11.72029 -11.45919 -11.17148 -11.14498 -10.92035 -10.86786 -10.43443 -10.35788 -10.09870 -8.97469 -8.28133 -5.45001 1.58317 1.65331 1.67157 1.81386 2.16991 2.60412 2.68466 2.98933 3.16277 3.37155 3.69694 3.71734 3.79942 3.82841 3.87321 3.94960 3.98726 4.04536 4.27348 4.29843 4.30988 4.34473 4.36031 4.51056 4.54248 4.55363 4.59461 4.61304 4.64822 4.69161 4.74818 4.77084 4.86026 4.89724 4.91712 4.93185 4.95875 5.04057 5.09812 5.13691 5.16782 5.24450 5.27995 5.33335 5.39936 5.47350 5.76671 6.21642 6.29117 6.32137 6.57298 6.93902 7.26832 7.69090 8.13070 8.95811 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.001818 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.697938 B =15401.753225 C =15573.295240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.100 3.900 3 C 0.148 3.852 4 N -0.711 5.711 5 C 0.507 3.493 6 O -0.590 6.590 7 C -0.135 4.135 8 C -0.090 4.090 9 C -0.115 4.115 10 H 0.083 0.917 11 C -0.121 4.121 12 C -0.153 4.153 13 C 0.052 3.948 14 O -0.404 6.404 15 C 0.059 3.941 16 C 0.124 3.876 17 N -0.611 5.611 18 C -0.350 4.350 19 H 0.056 0.944 20 C -0.076 4.076 21 N -0.943 5.943 22 Si 1.119 2.881 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.295 1.295 26 C 0.121 3.879 27 C 0.055 3.945 28 O -0.380 6.380 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.415 0.585 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.106 0.894 47 H 0.011 0.989 48 H 0.065 0.935 49 H 0.253 0.747 50 H 0.058 0.942 51 H 0.002 0.998 52 H 0.111 0.889 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.341 24.117 15.666 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 C 0.023 3.977 4 N -0.363 5.363 5 C 0.295 3.705 6 O -0.471 6.471 7 C -0.174 4.174 8 C -0.128 4.128 9 C -0.134 4.134 10 H 0.101 0.899 11 C -0.159 4.159 12 C -0.190 4.190 13 C -0.024 4.024 14 O -0.323 6.323 15 C -0.017 4.017 16 C -0.002 4.002 17 N -0.337 5.337 18 C -0.480 4.480 19 H 0.074 0.926 20 C -0.272 4.272 21 N -0.585 5.585 22 Si 0.944 3.056 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.222 1.222 26 C -0.004 4.004 27 C -0.022 4.022 28 O -0.300 6.300 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.252 0.748 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.070 0.930 46 H 0.124 0.876 47 H 0.029 0.971 48 H 0.083 0.917 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.020 0.980 52 H 0.129 0.871 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.332 23.006 14.924 28.144 hybrid contribution 1.008 0.810 -0.247 1.316 sum -5.325 23.815 14.677 28.477 Atomic orbital electron populations 1.22156 0.93691 1.02672 1.02924 1.22040 0.94804 0.90713 0.86590 1.21054 0.98748 0.88783 0.89139 1.45889 1.53317 1.11910 1.25195 1.21411 0.79379 0.81424 0.88238 1.90686 1.40096 1.67141 1.49169 1.21790 1.04015 0.96316 0.95299 1.21223 1.00839 0.93277 0.97462 1.21753 0.96167 0.96873 0.98576 0.89901 1.21661 1.00639 0.95052 0.98521 1.22171 0.96169 1.01926 0.98764 1.22747 0.93805 0.83296 1.02548 1.87915 1.70895 1.26506 1.46977 1.22832 0.93205 0.97464 0.88237 1.21581 0.96531 0.85352 0.96779 1.44267 1.69521 1.06291 1.13595 1.20245 1.24054 0.93835 1.09829 0.92623 1.27200 1.01669 0.97036 1.01303 1.70853 1.05470 1.39202 1.42991 0.82805 0.73246 0.74561 0.75013 1.19633 1.21175 1.22175 1.21434 0.96082 0.96417 0.86502 1.22992 0.99084 0.81921 0.98206 1.87843 1.73175 1.25921 1.43019 0.92770 0.90108 0.91457 0.92723 0.89983 0.74820 0.86319 0.86702 0.92210 0.92102 0.91255 0.91794 0.89581 0.91322 0.92810 0.87938 0.92986 0.87644 0.97149 0.91655 0.93677 0.92322 0.98015 0.87097 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.46 7.92 71.98 0.57 -3.89 16 2 C 0.10 3.20 0.76 -10.69 -0.01 3.20 16 3 C 0.15 4.23 4.82 86.38 0.42 4.64 16 4 N -0.71 -16.05 5.15 -463.06 -2.39 -18.43 16 5 C 0.51 11.75 7.83 87.66 0.69 12.44 16 6 O -0.59 -18.96 15.98 -3.02 -0.05 -19.01 16 7 C -0.13 -1.86 5.46 29.85 0.16 -1.70 16 8 C -0.09 -1.36 3.98 30.60 0.12 -1.24 16 9 C -0.11 -1.41 2.39 -10.70 -0.03 -1.43 16 10 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 11 C -0.12 -1.42 5.31 30.71 0.16 -1.25 16 12 C -0.15 -1.53 6.14 30.68 0.19 -1.34 16 13 C 0.05 0.59 6.84 72.01 0.49 1.08 16 14 O -0.40 -6.44 10.77 -148.98 -1.60 -8.04 16 15 C 0.06 0.74 5.82 72.01 0.42 1.16 16 16 C 0.12 5.12 5.41 86.36 0.47 5.59 16 17 N -0.61 -29.89 2.44 -698.33 -1.70 -31.59 16 18 C -0.35 -19.02 9.54 84.03 0.80 -18.22 16 19 H 0.06 3.01 7.94 -2.91 -0.02 2.99 16 20 C -0.08 -4.22 4.71 84.86 0.40 -3.82 16 21 N -0.94 -56.82 12.44 21.65 0.27 -56.55 16 22 Si 1.12 49.84 29.99 68.60 2.06 51.89 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 26 C 0.12 5.60 4.85 86.21 0.42 6.02 16 27 C 0.06 1.93 6.58 71.94 0.47 2.41 16 28 O -0.38 -12.82 9.98 -148.98 -1.49 -14.31 16 29 H 0.05 1.83 6.11 -2.39 -0.01 1.82 16 30 H 0.08 1.76 6.86 -2.39 -0.02 1.74 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.41 7.53 7.20 -92.71 -0.67 6.87 16 35 H 0.12 1.07 6.63 -2.39 -0.02 1.06 16 36 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.09 8.10 -2.39 -0.02 1.08 16 38 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.11 1.05 6.69 -2.39 -0.02 1.04 16 47 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.06 2.65 7.95 -2.39 -0.02 2.63 16 49 H 0.25 15.70 6.61 -92.70 -0.61 15.09 16 50 H 0.06 3.01 6.44 -2.39 -0.02 3.00 16 51 H 0.00 0.09 7.76 -2.39 -0.02 0.07 16 52 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 53 H 0.06 2.02 6.25 -2.39 -0.01 2.00 16 Total: -1.00 -71.07 403.06 1.22 -69.85 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.38 Total: 22.56 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.75 Total: 3.63 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.82 Total: -106.58 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -3.14 Total: -41.35 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.06 Total: 51.89 kcal Total: -71.07 1.22 -69.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108312180.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.308 kcal (2) G-P(sol) polarization free energy of solvation -71.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds