Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00177 * 2 1 4 4 H 1.48494 * 109.47010 * 270.00115 * 3 2 1 5 5 H 1.48507 * 109.46596 * 30.00234 * 3 2 1 6 6 H 1.48495 * 109.46644 * 149.99760 * 3 2 1 7 7 C 1.38817 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00004 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99408 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99823 * 185.85872 * 9 7 2 11 11 C 1.52999 * 109.47252 * 59.72929 * 10 9 7 12 12 N 1.46502 * 109.46883 * 54.61953 * 11 10 9 13 13 C 1.34780 * 120.00182 * 177.71349 * 12 11 10 14 14 O 1.21278 * 119.99441 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00108 * 180.02562 * 13 12 11 16 16 O 1.42903 * 109.47174 * 180.02562 * 15 13 12 17 17 C 1.42891 * 114.00169 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47533 * 179.97438 * 17 16 15 19 19 H 1.08999 * 110.43857 * 303.91334 * 18 17 16 20 20 C 1.54803 * 110.49225 * 181.21977 * 18 17 16 21 21 C 1.54999 * 102.09457 * 220.44319 * 20 18 17 22 22 O 1.44382 * 103.48859 * 37.02736 * 21 20 18 23 23 C 1.43745 * 106.97065 * 319.93784 * 22 21 20 24 24 C 1.53005 * 109.47017 * 299.73470 * 10 9 7 25 25 C 1.53003 * 109.47001 * 299.99718 * 24 10 9 26 26 C 1.52996 * 109.47096 * 300.00136 * 25 24 10 27 27 C 1.53005 * 109.47307 * 60.00051 * 26 25 24 28 28 C 1.52995 * 109.47515 * 179.73523 * 10 9 7 29 29 H 0.97000 * 119.99827 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00440 * 5.85664 * 9 7 2 31 31 H 1.08997 * 109.47669 * 174.62097 * 11 10 9 32 32 H 1.09003 * 109.47358 * 294.62478 * 11 10 9 33 33 H 0.97000 * 119.99836 * 357.72492 * 12 11 10 34 34 H 1.09006 * 109.46671 * 299.99466 * 15 13 12 35 35 H 1.08993 * 109.47376 * 59.99512 * 15 13 12 36 36 H 1.09004 * 109.47414 * 300.00243 * 17 16 15 37 37 H 1.09000 * 109.47207 * 59.99631 * 17 16 15 38 38 H 1.09006 * 110.91097 * 338.64482 * 20 18 17 39 39 H 1.09002 * 110.90656 * 102.24437 * 20 18 17 40 40 H 1.08988 * 110.62092 * 278.52098 * 21 20 18 41 41 H 1.09008 * 110.74941 * 155.58876 * 21 20 18 42 42 H 1.09001 * 109.87928 * 267.08666 * 23 22 21 43 43 H 1.09004 * 109.99625 * 146.01352 * 23 22 21 44 44 H 1.08998 * 109.47480 * 180.02562 * 24 10 9 45 45 H 1.08997 * 109.47235 * 59.99834 * 24 10 9 46 46 H 1.08996 * 109.46871 * 179.97438 * 25 24 10 47 47 H 1.09007 * 109.46878 * 60.00107 * 25 24 10 48 48 H 1.08999 * 109.47151 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.47108 * 299.99508 * 26 25 24 50 50 H 1.08993 * 109.47033 * 59.99784 * 27 26 25 51 51 H 1.08997 * 109.47235 * 179.97438 * 27 26 25 52 52 H 1.09004 * 109.46551 * 299.99796 * 28 10 9 53 53 H 1.09002 * 109.47584 * 180.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0523 -3.6535 0.1284 11 6 2.8237 -3.6663 1.4496 12 7 1.9016 -3.3987 2.5561 13 6 2.3525 -3.4069 3.8262 14 8 3.5218 -3.6353 4.0529 15 6 1.4039 -3.1321 4.9644 16 8 2.1143 -3.1960 6.2027 17 6 1.3024 -2.9483 7.3521 18 6 2.1623 -3.0424 8.6140 19 1 2.6601 -4.0108 8.6641 20 6 1.2987 -2.8079 9.8771 21 6 2.2340 -1.9354 10.7526 22 8 2.8985 -1.0861 9.7925 23 6 3.1978 -1.9016 8.6473 24 6 3.0335 -3.7991 -1.0365 25 6 2.2621 -3.7863 -2.3577 26 6 1.2686 -4.9496 -2.3794 27 6 0.2873 -4.8040 -1.2145 28 6 1.0587 -4.8168 0.1066 29 1 -0.4850 0.8401 0.0004 30 1 0.3593 -2.3902 -0.0859 31 1 3.2867 -4.6429 1.5906 32 1 3.5964 -2.8978 1.4267 33 1 0.9665 -3.2157 2.3746 34 1 0.9712 -2.1388 4.8450 35 1 0.6086 -3.8774 4.9625 36 1 0.8675 -1.9513 7.2818 37 1 0.5049 -3.6899 7.4002 38 1 0.3842 -2.2693 9.6286 39 1 1.0703 -3.7514 10.3728 40 1 2.9569 -2.5575 11.2799 41 1 1.6563 -1.3382 11.4583 42 1 4.2021 -2.3151 8.7390 43 1 3.1237 -1.3070 7.7367 44 1 3.5740 -4.7408 -0.9409 45 1 3.7414 -2.9704 -1.0210 46 1 2.9612 -3.8896 -3.1876 47 1 1.7214 -2.8447 -2.4537 48 1 0.7193 -4.9408 -3.3209 49 1 1.8093 -5.8911 -2.2836 50 1 -0.2534 -3.8625 -1.3105 51 1 -0.4208 -5.6325 -1.2303 52 1 0.3597 -4.7131 0.9366 53 1 1.5994 -5.7584 0.2030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115755822.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -153.485055 kcal Electronic energy + Delta-G solvation = -30850.517879 eV Core-core repulsion = 26720.900009 eV Total energy + Delta-G solvation = -4129.617870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04125 -40.53258 -39.85711 -38.33803 -35.86896 -35.03653 -33.91858 -32.86414 -31.55175 -30.78727 -30.32479 -29.02981 -26.66872 -25.86472 -25.65668 -23.47526 -23.37920 -21.92832 -21.63751 -21.26144 -19.80981 -19.04835 -18.29412 -17.94642 -17.71689 -17.02774 -16.93614 -16.73207 -16.33749 -16.04854 -15.93735 -15.77579 -15.47215 -15.32384 -14.95338 -14.72347 -14.35744 -14.22914 -13.93009 -13.60979 -13.38918 -13.28953 -13.24448 -12.92993 -12.87398 -12.81206 -12.64955 -12.59345 -12.50259 -12.18035 -12.06790 -12.05783 -11.90748 -11.68079 -11.62510 -11.21114 -11.13267 -10.91329 -10.76169 -10.70520 -10.65195 -10.62105 -9.90276 -8.90246 -7.88115 -5.11656 1.43189 1.47165 1.51671 1.64347 1.92885 2.57905 2.95036 3.02027 3.45252 3.53781 3.79234 3.82210 3.84628 3.93033 3.94272 4.04477 4.14704 4.18142 4.22350 4.27400 4.32924 4.35882 4.40939 4.49464 4.52237 4.65761 4.67510 4.76765 4.77917 4.79789 4.82567 4.85222 4.87218 4.92522 4.98075 5.01140 5.08498 5.16564 5.19915 5.23649 5.46076 5.49819 5.52078 5.58087 5.61015 5.70468 5.80605 5.87645 6.05973 6.35443 6.67790 7.31554 7.44929 8.17180 8.44070 9.34036 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.002699 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.129288 B =10370.421191 C =11879.719271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.941 3.059 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.206 4.206 8 H 0.059 0.941 9 N -0.708 5.708 10 C 0.190 3.810 11 C 0.125 3.875 12 N -0.692 5.692 13 C 0.504 3.496 14 O -0.584 6.584 15 C 0.051 3.949 16 O -0.392 6.392 17 C 0.064 3.936 18 C -0.118 4.118 19 H 0.095 0.905 20 C -0.138 4.138 21 C 0.037 3.963 22 O -0.408 6.408 23 C 0.050 3.950 24 C -0.117 4.117 25 C -0.106 4.106 26 C -0.108 4.108 27 C -0.113 4.113 28 C -0.108 4.108 29 H 0.247 0.753 30 H 0.379 0.621 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.409 0.591 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.057 0.943 47 H 0.042 0.958 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.044 0.956 51 H 0.076 0.924 52 H 0.064 0.936 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 -13.361 12.671 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.253 4.253 3 Si 0.774 3.226 4 H -0.221 1.221 5 H -0.226 1.226 6 H -0.212 1.212 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.349 5.349 10 C 0.099 3.901 11 C -0.001 4.001 12 N -0.344 5.344 13 C 0.290 3.710 14 O -0.464 6.464 15 C -0.028 4.028 16 O -0.311 6.311 17 C -0.012 4.012 18 C -0.137 4.137 19 H 0.114 0.886 20 C -0.175 4.175 21 C -0.039 4.039 22 O -0.327 6.327 23 C -0.027 4.027 24 C -0.157 4.157 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.150 4.150 28 C -0.145 4.145 29 H 0.056 0.944 30 H 0.213 0.787 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.246 0.754 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.063 0.937 51 H 0.094 0.906 52 H 0.082 0.918 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.675 -13.212 12.878 18.525 hybrid contribution -0.171 1.703 -0.460 1.772 sum -1.845 -11.509 12.418 17.031 Atomic orbital electron populations 1.69727 1.05573 1.25238 1.60322 1.25081 0.95951 0.99304 1.04922 0.85621 0.77747 0.82272 0.76994 1.22067 1.22602 1.21189 1.19172 0.90614 0.85063 1.38955 0.92290 1.42463 1.05821 0.99836 1.86745 1.20037 0.92243 0.86995 0.90810 1.21711 0.92172 0.98898 0.87349 1.45622 1.13929 1.70152 1.04658 1.20807 0.88814 0.76658 0.84715 1.90650 1.19766 1.50828 1.85172 1.22217 0.93637 1.03936 0.83038 1.87947 1.36830 1.92704 1.13612 1.22777 0.93473 1.01062 0.83854 1.22544 0.96704 1.00011 0.94398 0.88641 1.23145 0.98608 1.02218 0.93527 1.23814 0.94720 0.93255 0.92081 1.88861 1.79550 1.35833 1.28491 1.23174 0.98216 0.92347 0.88921 1.21816 0.97746 1.00440 0.95649 1.21311 0.97982 0.98880 0.96225 1.21455 0.96935 0.98061 0.98100 1.21442 0.97842 1.01381 0.94350 1.21667 0.97677 0.97150 0.98055 0.94426 0.78729 0.91648 0.95298 0.75425 0.89365 0.86887 0.92579 0.90168 0.89489 0.87257 0.91126 0.87274 0.92524 0.91276 0.90951 0.94481 0.92429 0.93949 0.92097 0.90844 0.93681 0.90569 0.91767 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.92 13.07 21.65 0.28 -53.64 16 2 C -0.06 -3.22 5.50 84.86 0.47 -2.76 16 3 Si 0.94 45.86 29.55 68.60 2.03 47.89 16 4 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.21 -10.36 8.72 84.03 0.73 -9.63 16 8 H 0.06 3.08 6.75 -2.91 -0.02 3.06 16 9 N -0.71 -29.95 3.46 -303.34 -1.05 -31.00 16 10 C 0.19 6.38 0.40 3.60 0.00 6.38 16 11 C 0.12 4.47 4.31 86.38 0.37 4.84 16 12 N -0.69 -23.40 5.10 -463.06 -2.36 -25.76 16 13 C 0.50 17.84 7.91 87.66 0.69 18.53 16 14 O -0.58 -25.76 16.50 16.01 0.26 -25.50 16 15 C 0.05 1.36 6.42 71.24 0.46 1.81 16 16 O -0.39 -11.22 9.62 -129.94 -1.25 -12.47 16 17 C 0.06 1.27 5.03 71.98 0.36 1.64 16 18 C -0.12 -2.17 3.34 -9.81 -0.03 -2.20 16 19 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 20 C -0.14 -1.70 6.71 31.89 0.21 -1.48 16 21 C 0.04 0.55 7.72 72.67 0.56 1.12 16 22 O -0.41 -9.93 11.52 -148.98 -1.72 -11.65 16 23 C 0.05 1.21 7.23 72.35 0.52 1.73 16 24 C -0.12 -3.79 4.57 30.60 0.14 -3.65 16 25 C -0.11 -3.30 5.77 30.59 0.18 -3.13 16 26 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 27 C -0.11 -2.93 5.75 30.60 0.18 -2.75 16 28 C -0.11 -2.85 4.66 30.59 0.14 -2.71 16 29 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 30 H 0.38 17.19 6.52 -92.71 -0.60 16.59 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 33 H 0.41 13.00 7.37 -92.71 -0.68 12.32 16 34 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 0.99 7.87 -2.38 -0.02 0.97 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 41 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.94 7.60 -2.38 -0.02 1.92 16 44 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.04 1.38 7.18 -2.39 -0.02 1.36 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.04 1.64 7.60 -2.38 -0.02 1.62 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 51 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.06 1.64 7.26 -2.38 -0.02 1.62 16 53 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -68.94 411.26 0.97 -67.97 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.39 Total: 38.95 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.17 Total: 5.21 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -3.13 Total: -110.39 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -2.70 Total: -49.62 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -68.94 0.97 -67.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115755822.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.517 kcal (2) G-P(sol) polarization free energy of solvation -68.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds