Wall clock time and date at job start Sat Apr 11 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34821 * 125.89669 * 2 1 4 4 C 1.36429 * 107.61397 * 180.13001 * 3 2 1 5 5 C 1.48477 * 126.22829 * 179.87125 * 4 3 2 6 6 C 1.39300 * 120.12122 * 179.71021 * 5 4 3 7 7 C 1.38028 * 119.88184 * 180.02562 * 6 5 4 8 8 C 1.38316 * 120.11694 * 0.02684 * 7 6 5 9 9 C 1.50703 * 119.88259 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47510 * 89.99342 * 9 8 7 11 11 C 1.46891 * 111.00013 * 180.02562 * 10 9 8 12 12 C 1.53039 * 109.46168 * 275.02859 * 11 10 9 13 13 C 1.53198 * 109.31553 * 178.60088 * 12 11 10 14 14 N 1.46922 * 108.76201 * 54.65551 * 13 12 11 15 15 C 1.36936 * 120.63028 * 126.36182 * 14 13 12 16 16 H 1.08000 * 119.99975 * 331.86573 * 15 14 13 17 17 C 1.38815 * 120.00271 * 151.85902 * 15 14 13 18 18 N 1.31620 * 119.99634 * 343.07517 * 17 15 14 19 19 Si 1.86795 * 119.99949 * 163.06746 * 17 15 14 20 20 H 1.48502 * 109.47317 * 90.00417 * 19 17 15 21 21 H 1.48507 * 109.47087 * 210.00321 * 19 17 15 22 22 H 1.48498 * 109.47449 * 330.00267 * 19 17 15 23 23 C 1.46926 * 118.74106 * 306.38705 * 14 13 12 24 24 C 1.53046 * 109.45776 * 154.97735 * 11 10 9 25 25 C 1.38318 * 120.23596 * 0.24623 * 8 7 6 26 26 C 1.38026 * 120.11732 * 359.45532 * 25 8 7 27 27 C 1.40844 * 107.55350 * 359.61138 * 4 3 2 28 28 N 1.30676 * 108.10066 * 0.24224 * 27 4 3 29 29 H 1.08999 * 109.47305 * 270.28653 * 1 2 3 30 30 H 1.09003 * 109.47195 * 30.28410 * 1 2 3 31 31 H 1.09002 * 109.47448 * 150.28488 * 1 2 3 32 32 H 1.08002 * 126.19733 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.06003 * 0.04888 * 6 5 4 34 34 H 1.07997 * 119.94278 * 180.02562 * 7 6 5 35 35 H 1.09009 * 109.46709 * 329.99667 * 9 8 7 36 36 H 1.09001 * 109.47182 * 210.00149 * 9 8 7 37 37 H 1.00901 * 111.00138 * 303.96409 * 10 9 8 38 38 H 1.09000 * 109.45962 * 35.00213 * 11 10 9 39 39 H 1.08994 * 109.50190 * 298.56707 * 12 11 10 40 40 H 1.09004 * 109.49735 * 58.66898 * 12 11 10 41 41 H 1.09000 * 109.59555 * 294.87065 * 13 12 11 42 42 H 1.08999 * 109.70480 * 174.50615 * 13 12 11 43 43 H 0.97003 * 119.99572 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.58544 * 293.81761 * 23 14 13 45 45 H 1.08998 * 109.70281 * 173.46372 * 23 14 13 46 46 H 1.08993 * 109.49791 * 301.33574 * 24 11 10 47 47 H 1.08997 * 109.49655 * 61.43954 * 24 11 10 48 48 H 1.08006 * 119.93757 * 179.70262 * 25 8 7 49 49 H 1.08001 * 120.05994 * 180.28974 * 26 25 8 50 50 H 1.08003 * 125.95704 * 180.22129 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.0922 0.0000 4 6 3.5509 0.6642 -0.0030 5 6 4.7598 1.5262 -0.0067 6 6 6.0285 0.9509 -0.0034 7 6 7.1490 1.7570 -0.0064 8 6 7.0137 3.1335 -0.0121 9 6 8.2407 4.0085 -0.0148 10 7 8.6406 4.2871 -1.4006 11 6 9.8365 5.1390 -1.4423 12 6 9.4202 6.6078 -1.3357 13 6 10.6718 7.4911 -1.3443 14 7 11.4655 7.1744 -2.5394 15 6 11.8458 8.1635 -3.4067 16 1 11.2424 9.0534 -3.5090 17 6 13.0069 8.0226 -4.1543 18 7 13.9080 7.1279 -3.8079 19 14 13.2902 9.1024 -5.6519 20 1 14.0004 10.3406 -5.2422 21 1 14.1127 8.3656 -6.6450 22 1 11.9831 9.4594 -6.2593 23 6 11.8431 5.7762 -2.7866 24 6 10.5783 4.9120 -2.7615 25 6 5.7563 3.7098 -0.0097 26 6 4.6293 2.9130 -0.0130 27 6 3.5330 -0.7441 0.0043 28 7 2.2858 -1.1343 0.0060 29 1 -0.3634 0.0051 1.0276 30 1 -0.3634 0.8874 -0.5182 31 1 -0.3634 -0.8925 -0.5094 32 1 1.9234 2.1199 -0.0004 33 1 6.1352 -0.1238 0.0011 34 1 8.1330 1.3120 -0.0042 35 1 9.0529 3.4969 0.5019 36 1 8.0194 4.9461 0.4951 37 1 8.7888 3.4307 -1.9133 38 1 10.4918 4.8859 -0.6089 39 1 8.7850 6.8683 -2.1822 40 1 8.8714 6.7639 -0.4068 41 1 11.2636 7.2953 -0.4501 42 1 10.3804 8.5412 -1.3669 43 1 14.7192 7.0292 -4.3306 44 1 12.5304 5.4406 -2.0101 45 1 12.3237 5.6921 -3.7613 46 1 10.8540 3.8611 -2.8477 47 1 9.9321 5.1888 -3.5945 48 1 5.6563 4.7852 -0.0094 49 1 3.6479 3.3641 -0.0159 50 1 4.3991 -1.3894 0.0076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116878063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:06 Heat of formation + Delta-G solvation = 122.106077 kcal Electronic energy + Delta-G solvation = -27866.563508 eV Core-core repulsion = 24088.497837 eV Total energy + Delta-G solvation = -3778.065671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57982 -39.32138 -37.89474 -35.31270 -33.90090 -32.77257 -31.65362 -31.04620 -30.23290 -29.63099 -28.70793 -27.10298 -25.24406 -24.03827 -23.09002 -22.31427 -21.76294 -21.11385 -20.84816 -20.29163 -19.01934 -17.77360 -16.77618 -16.01574 -15.88008 -15.60536 -15.29268 -14.98093 -14.75462 -14.49265 -14.40804 -13.91992 -13.61896 -13.51240 -13.44584 -13.37860 -13.20340 -13.05540 -12.88565 -12.56706 -12.40804 -12.20282 -11.99425 -11.41989 -11.31232 -11.09365 -10.96556 -10.83694 -10.67504 -10.63468 -10.30471 -10.15876 -9.92004 -9.86782 -9.75899 -9.54930 -9.38680 -8.97975 -8.43110 -8.14543 -7.89540 -6.62108 -5.75124 -3.16739 0.89964 1.38234 1.61888 2.08010 2.60080 3.40144 3.47093 3.50146 3.83043 4.04307 4.36448 4.53655 4.55928 4.59877 4.64971 4.76095 4.84848 4.90512 4.91441 4.99500 5.12569 5.29769 5.39116 5.39270 5.45667 5.51919 5.55625 5.68881 5.72782 5.77011 5.95065 5.98986 6.03264 6.13757 6.20741 6.37721 6.39520 6.49179 6.54235 6.57786 6.59239 6.62576 6.68668 6.72250 6.87307 6.93527 7.09502 7.27596 7.40280 7.41617 7.66786 7.70919 7.83862 8.49646 9.25797 9.89616 10.46712 11.33646 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.027658 B = 0.001629 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.134327 B =17179.484774 C =17311.655055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.375 5.375 3 C 0.067 3.933 4 C -0.195 4.195 5 C -0.001 4.001 6 C -0.118 4.118 7 C -0.107 4.107 8 C -0.082 4.082 9 C 0.097 3.903 10 N -0.682 5.682 11 C 0.096 3.904 12 C -0.116 4.116 13 C 0.144 3.856 14 N -0.591 5.591 15 C -0.250 4.250 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.174 3.826 24 C -0.140 4.140 25 C -0.090 4.090 26 C -0.123 4.123 27 C 0.064 3.936 28 N -0.298 5.298 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.337 0.663 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.014 0.986 42 H 0.054 0.946 43 H 0.253 0.747 44 H 0.016 0.984 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.124 0.876 49 H 0.117 0.883 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.325 -14.606 10.278 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.156 5.156 3 C -0.079 4.079 4 C -0.206 4.206 5 C -0.003 4.003 6 C -0.137 4.137 7 C -0.126 4.126 8 C -0.083 4.083 9 C -0.032 4.032 10 N -0.313 5.313 11 C -0.013 4.013 12 C -0.156 4.156 13 C 0.017 3.983 14 N -0.314 5.314 15 C -0.379 4.379 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.549 5.549 19 Si 0.731 3.269 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.047 3.953 24 C -0.180 4.180 25 C -0.108 4.108 26 C -0.142 4.142 27 C -0.123 4.123 28 N -0.118 5.118 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.194 0.806 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.155 0.845 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.142 0.858 49 H 0.135 0.865 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -25.581 -15.109 10.125 31.388 hybrid contribution 1.387 0.558 -0.493 1.574 sum -24.194 -14.551 9.632 29.830 Atomic orbital electron populations 1.21900 0.73936 1.04722 1.03537 1.48397 1.06817 1.03772 1.56576 1.22563 0.90697 0.93423 1.01262 1.18937 0.92175 0.92951 1.16566 1.17988 0.90845 0.91964 0.99491 1.20975 0.91451 0.99488 1.01738 1.20968 0.98447 0.93127 1.00022 1.19878 0.94969 0.93558 0.99870 1.20918 0.93151 0.97956 0.91141 1.60663 1.37687 1.21173 1.11802 1.21491 0.88528 0.93569 0.97707 1.21999 0.98978 0.94195 1.00429 1.20931 0.90794 0.96699 0.89840 1.44036 1.61463 1.03058 1.22865 1.19186 1.03073 0.99682 1.16004 0.91752 1.25036 0.94975 0.98961 1.00768 1.70033 1.08371 1.37414 1.39096 0.86314 0.77715 0.79864 0.82998 1.21444 1.21598 1.20491 1.20729 0.90575 0.82288 1.01659 1.22399 1.00218 0.99109 0.96292 1.20939 0.91567 0.99873 0.98452 1.21020 0.98460 0.92484 1.02193 1.23983 0.95093 0.94312 0.98930 1.77270 1.01827 1.08205 1.24547 0.90591 0.89279 0.89133 0.80570 0.86244 0.86241 0.94770 0.90334 0.84532 0.94669 0.91783 0.93626 0.96822 0.92762 0.93709 0.96640 0.89376 0.93675 0.91841 0.85848 0.86527 0.79742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.37 11.46 59.84 0.69 1.05 16 2 N -0.37 -3.01 4.00 -67.90 -0.27 -3.28 16 3 C 0.07 0.52 10.88 -16.89 -0.18 0.34 16 4 C -0.20 -1.84 6.04 -105.34 -0.64 -2.47 16 5 C 0.00 -0.01 5.88 -104.89 -0.62 -0.63 16 6 C -0.12 -1.16 9.58 -39.26 -0.38 -1.53 16 7 C -0.11 -1.12 9.68 -39.63 -0.38 -1.51 16 8 C -0.08 -0.94 5.40 -104.56 -0.56 -1.50 16 9 C 0.10 1.21 5.60 -4.97 -0.03 1.18 16 10 N -0.68 -9.86 6.30 -107.95 -0.68 -10.54 16 11 C 0.10 1.64 2.46 -67.67 -0.17 1.47 16 12 C -0.12 -2.10 5.59 -26.61 -0.15 -2.25 16 13 C 0.14 3.09 6.52 -3.71 -0.02 3.06 16 14 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 15 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 16 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 18 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 19 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 24 C -0.14 -2.70 5.36 -26.61 -0.14 -2.85 16 25 C -0.09 -0.97 9.68 -39.63 -0.38 -1.36 16 26 C -0.12 -1.20 9.57 -39.26 -0.38 -1.58 16 27 C 0.06 0.60 11.42 -17.06 -0.19 0.40 16 28 N -0.30 -3.08 12.54 30.80 0.39 -2.69 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.18 0.82 7.28 -52.49 -0.38 0.43 16 33 H 0.12 0.93 7.05 -52.49 -0.37 0.56 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.03 0.42 8.00 -51.92 -0.42 0.00 16 36 H 0.08 0.98 7.35 -51.93 -0.38 0.60 16 37 H 0.34 4.67 8.32 -39.29 -0.33 4.34 16 38 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.73 7.42 -51.93 -0.39 0.34 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 46 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 47 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 49 H 0.12 0.87 7.02 -52.49 -0.37 0.50 16 50 H 0.19 1.26 7.35 -52.48 -0.39 0.87 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -32.94 401.84 -11.14 -44.09 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.92 Total: 2.05 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.79 Total: -11.16 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.46 Total: -57.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.94 -11.14 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116878063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.193 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds