Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34821 * 125.89669 * 2 1 4 4 C 1.36429 * 107.61397 * 180.13001 * 3 2 1 5 5 C 1.48477 * 126.22829 * 179.87125 * 4 3 2 6 6 C 1.39300 * 120.12122 * 179.71021 * 5 4 3 7 7 C 1.38028 * 119.88184 * 180.02562 * 6 5 4 8 8 C 1.38316 * 120.11694 * 0.02684 * 7 6 5 9 9 C 1.50703 * 119.88259 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47510 * 89.99342 * 9 8 7 11 11 C 1.46891 * 111.00013 * 180.02562 * 10 9 8 12 12 C 1.53039 * 109.46168 * 275.02859 * 11 10 9 13 13 C 1.53198 * 109.31553 * 178.60088 * 12 11 10 14 14 N 1.46922 * 108.76201 * 54.65551 * 13 12 11 15 15 C 1.36936 * 120.63028 * 126.36182 * 14 13 12 16 16 H 1.08000 * 119.99975 * 331.86573 * 15 14 13 17 17 C 1.38815 * 120.00271 * 151.85902 * 15 14 13 18 18 N 1.31620 * 119.99634 * 343.07517 * 17 15 14 19 19 Si 1.86795 * 119.99949 * 163.06746 * 17 15 14 20 20 H 1.48502 * 109.47317 * 90.00417 * 19 17 15 21 21 H 1.48507 * 109.47087 * 210.00321 * 19 17 15 22 22 H 1.48498 * 109.47449 * 330.00267 * 19 17 15 23 23 C 1.46926 * 118.74106 * 306.38705 * 14 13 12 24 24 C 1.53046 * 109.45776 * 154.97735 * 11 10 9 25 25 C 1.38318 * 120.23596 * 0.24623 * 8 7 6 26 26 C 1.38026 * 120.11732 * 359.45532 * 25 8 7 27 27 C 1.40844 * 107.55350 * 359.61138 * 4 3 2 28 28 N 1.30676 * 108.10066 * 0.24224 * 27 4 3 29 29 H 1.08999 * 109.47305 * 270.28653 * 1 2 3 30 30 H 1.09003 * 109.47195 * 30.28410 * 1 2 3 31 31 H 1.09002 * 109.47448 * 150.28488 * 1 2 3 32 32 H 1.08002 * 126.19733 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.06003 * 0.04888 * 6 5 4 34 34 H 1.07997 * 119.94278 * 180.02562 * 7 6 5 35 35 H 1.09009 * 109.46709 * 329.99667 * 9 8 7 36 36 H 1.09001 * 109.47182 * 210.00149 * 9 8 7 37 37 H 1.00901 * 111.00138 * 303.96409 * 10 9 8 38 38 H 1.09000 * 109.45962 * 35.00213 * 11 10 9 39 39 H 1.08994 * 109.50190 * 298.56707 * 12 11 10 40 40 H 1.09004 * 109.49735 * 58.66898 * 12 11 10 41 41 H 1.09000 * 109.59555 * 294.87065 * 13 12 11 42 42 H 1.08999 * 109.70480 * 174.50615 * 13 12 11 43 43 H 0.97003 * 119.99572 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.58544 * 293.81761 * 23 14 13 45 45 H 1.08998 * 109.70281 * 173.46372 * 23 14 13 46 46 H 1.08993 * 109.49791 * 301.33574 * 24 11 10 47 47 H 1.08997 * 109.49655 * 61.43954 * 24 11 10 48 48 H 1.08006 * 119.93757 * 179.70262 * 25 8 7 49 49 H 1.08001 * 120.05994 * 180.28974 * 26 25 8 50 50 H 1.08003 * 125.95704 * 180.22129 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.0922 0.0000 4 6 3.5509 0.6642 -0.0030 5 6 4.7598 1.5262 -0.0067 6 6 6.0285 0.9509 -0.0034 7 6 7.1490 1.7570 -0.0064 8 6 7.0137 3.1335 -0.0121 9 6 8.2407 4.0085 -0.0148 10 7 8.6406 4.2871 -1.4006 11 6 9.8365 5.1390 -1.4423 12 6 9.4202 6.6078 -1.3357 13 6 10.6718 7.4911 -1.3443 14 7 11.4655 7.1744 -2.5394 15 6 11.8458 8.1635 -3.4067 16 1 11.2424 9.0534 -3.5090 17 6 13.0069 8.0226 -4.1543 18 7 13.9080 7.1279 -3.8079 19 14 13.2902 9.1024 -5.6519 20 1 14.0004 10.3406 -5.2422 21 1 14.1127 8.3656 -6.6450 22 1 11.9831 9.4594 -6.2593 23 6 11.8431 5.7762 -2.7866 24 6 10.5783 4.9120 -2.7615 25 6 5.7563 3.7098 -0.0097 26 6 4.6293 2.9130 -0.0130 27 6 3.5330 -0.7441 0.0043 28 7 2.2858 -1.1343 0.0060 29 1 -0.3634 0.0051 1.0276 30 1 -0.3634 0.8874 -0.5182 31 1 -0.3634 -0.8925 -0.5094 32 1 1.9234 2.1199 -0.0004 33 1 6.1352 -0.1238 0.0011 34 1 8.1330 1.3120 -0.0042 35 1 9.0529 3.4969 0.5019 36 1 8.0194 4.9461 0.4951 37 1 8.7888 3.4307 -1.9133 38 1 10.4918 4.8859 -0.6089 39 1 8.7850 6.8683 -2.1822 40 1 8.8714 6.7639 -0.4068 41 1 11.2636 7.2953 -0.4501 42 1 10.3804 8.5412 -1.3669 43 1 14.7192 7.0292 -4.3306 44 1 12.5304 5.4406 -2.0101 45 1 12.3237 5.6921 -3.7613 46 1 10.8540 3.8611 -2.8477 47 1 9.9321 5.1888 -3.5945 48 1 5.6563 4.7852 -0.0094 49 1 3.6479 3.3641 -0.0159 50 1 4.3991 -1.3894 0.0076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116878063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = 103.187801 kcal Electronic energy + Delta-G solvation = -27867.383866 eV Core-core repulsion = 24088.497837 eV Total energy + Delta-G solvation = -3778.886029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.17570 -40.17552 -39.36341 -36.71661 -34.73992 -34.00080 -32.93620 -31.84999 -31.63592 -31.08224 -29.76310 -27.80796 -26.66172 -25.38450 -23.88362 -23.72437 -23.04736 -22.41945 -21.45334 -21.00625 -20.66431 -18.72656 -18.34518 -17.01291 -16.84819 -16.37719 -16.29180 -16.13042 -15.96088 -15.57942 -15.53380 -15.29537 -15.08525 -14.79584 -14.47395 -14.24167 -13.94936 -13.88063 -13.77773 -13.72226 -13.37447 -13.29130 -13.11292 -13.01846 -12.92516 -12.56557 -12.43244 -12.13454 -12.04162 -11.95550 -11.77705 -11.74253 -11.51755 -11.21922 -11.12934 -10.54188 -10.51410 -10.37864 -9.72324 -9.30768 -8.67859 -8.59650 -7.86477 -5.31375 0.19441 0.64023 0.99350 1.47126 1.48808 1.58814 1.63351 1.91276 2.52656 3.02659 3.27749 3.46663 3.54988 3.72187 3.85927 3.94134 4.03114 4.10271 4.15202 4.20727 4.25538 4.32668 4.43712 4.44369 4.49323 4.57043 4.62703 4.69739 4.72310 4.73509 4.75657 4.77766 4.90590 4.99226 5.02133 5.07714 5.12839 5.19449 5.28102 5.30346 5.43400 5.47488 5.55097 5.66257 5.69605 5.75162 5.78966 5.84459 6.06677 6.14557 6.22849 6.40836 6.53316 6.66629 7.16378 7.87895 8.39803 9.20118 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.027658 B = 0.001629 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.134327 B =17179.484774 C =17311.655055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.376 5.376 3 C 0.076 3.924 4 C -0.220 4.220 5 C -0.002 4.002 6 C -0.127 4.127 7 C -0.113 4.113 8 C -0.098 4.098 9 C 0.102 3.898 10 N -0.679 5.679 11 C 0.107 3.893 12 C -0.103 4.103 13 C 0.140 3.860 14 N -0.610 5.610 15 C -0.263 4.263 16 H 0.065 0.935 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.271 1.271 23 C 0.180 3.820 24 C -0.126 4.126 25 C -0.100 4.100 26 C -0.127 4.127 27 C 0.055 3.945 28 N -0.334 5.334 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.209 0.791 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.342 0.658 38 H 0.033 0.967 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.012 0.988 42 H 0.054 0.946 43 H 0.250 0.750 44 H -0.005 1.005 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.128 0.872 49 H 0.140 0.860 50 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.833 -14.682 10.634 32.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.157 5.157 3 C -0.072 4.072 4 C -0.232 4.232 5 C -0.004 4.004 6 C -0.145 4.145 7 C -0.132 4.132 8 C -0.098 4.098 9 C -0.027 4.027 10 N -0.311 5.311 11 C -0.003 4.003 12 C -0.142 4.142 13 C 0.014 3.986 14 N -0.334 5.334 15 C -0.393 4.393 16 H 0.083 0.917 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.196 1.196 23 C 0.054 3.946 24 C -0.166 4.166 25 C -0.118 4.118 26 C -0.145 4.145 27 C -0.131 4.131 28 N -0.155 5.155 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.225 0.775 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.161 0.839 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.013 0.987 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.146 0.854 49 H 0.158 0.842 50 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -28.136 -15.202 10.502 33.660 hybrid contribution 2.052 0.547 -0.533 2.190 sum -26.083 -14.654 9.969 31.535 Atomic orbital electron populations 1.22254 0.71733 1.06140 1.04821 1.48772 1.08147 1.03276 1.55508 1.23080 0.90241 0.94646 0.99244 1.19055 0.92742 0.92951 1.18424 1.18165 0.91186 0.92313 0.98719 1.21215 0.91372 1.00401 1.01533 1.21107 0.99146 0.92967 0.99933 1.19824 0.94717 0.93786 1.01496 1.20895 0.93795 0.98312 0.89658 1.60579 1.35738 1.21320 1.13445 1.21235 0.89301 0.93653 0.96065 1.21810 0.97056 0.94039 1.01316 1.21083 0.91612 0.97648 0.88242 1.44310 1.61906 1.03156 1.24015 1.19517 1.03047 1.00196 1.16588 0.91723 1.25794 0.94859 1.00591 1.03379 1.70185 1.08722 1.39141 1.40119 0.85289 0.77652 0.78097 0.79488 1.21042 1.21811 1.19645 1.20535 0.92305 0.82841 0.98963 1.22155 0.97833 0.99191 0.97383 1.21082 0.91761 1.00307 0.98669 1.21265 0.99252 0.92384 1.01637 1.24297 0.95423 0.94842 0.98516 1.77211 1.02511 1.09838 1.25976 0.89360 0.86536 0.89107 0.77469 0.84733 0.85449 0.94428 0.90334 0.83942 0.94921 0.92882 0.90904 0.96985 0.92744 0.94123 0.98661 0.92771 0.91535 0.92827 0.85449 0.84241 0.78436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.46 127.77 1.46 1.91 16 2 N -0.38 -5.31 4.00 -368.73 -1.48 -6.78 16 3 C 0.08 0.99 10.88 83.81 0.91 1.90 16 4 C -0.22 -3.77 6.04 -20.33 -0.12 -3.90 16 5 C 0.00 -0.04 5.88 -20.04 -0.12 -0.16 16 6 C -0.13 -2.31 9.58 22.48 0.22 -2.09 16 7 C -0.11 -2.20 9.68 22.24 0.22 -1.99 16 8 C -0.10 -2.07 5.40 -19.83 -0.11 -2.18 16 9 C 0.10 2.34 5.60 85.56 0.48 2.82 16 10 N -0.68 -18.39 6.30 -495.43 -3.12 -21.51 16 11 C 0.11 3.51 2.46 44.95 0.11 3.62 16 12 C -0.10 -3.57 5.59 30.67 0.17 -3.39 16 13 C 0.14 5.95 6.52 86.37 0.56 6.52 16 14 N -0.61 -31.44 2.99 -699.09 -2.09 -33.54 16 15 C -0.26 -14.83 9.58 84.03 0.81 -14.02 16 16 H 0.07 3.56 7.88 -2.91 -0.02 3.53 16 17 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 18 N -0.94 -56.11 11.19 21.65 0.24 -55.86 16 19 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 C 0.18 8.85 5.30 86.36 0.46 9.31 16 24 C -0.13 -4.80 5.36 30.67 0.16 -4.64 16 25 C -0.10 -1.97 9.68 22.24 0.22 -1.76 16 26 C -0.13 -2.20 9.57 22.48 0.21 -1.98 16 27 C 0.06 0.98 11.42 85.50 0.98 1.96 16 28 N -0.33 -6.59 12.54 -56.46 -0.71 -7.30 16 29 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.21 1.14 7.28 -2.91 -0.02 1.12 16 33 H 0.13 1.91 7.05 -2.91 -0.02 1.89 16 34 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.04 0.85 8.00 -2.38 -0.02 0.83 16 36 H 0.08 1.80 7.35 -2.39 -0.02 1.78 16 37 H 0.34 8.83 8.32 -89.69 -0.75 8.08 16 38 H 0.03 1.11 7.80 -2.39 -0.02 1.09 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.15 7.42 -2.38 -0.02 2.13 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.05 3.02 6.06 -2.39 -0.01 3.00 16 46 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 47 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 49 H 0.14 1.64 7.02 -2.91 -0.02 1.62 16 50 H 0.20 2.56 7.35 -2.91 -0.02 2.54 16 Total: -1.00 -71.96 401.84 2.10 -69.87 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.19 Total: 18.14 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 7.03 Total: -10.55 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -7.15 Total: -124.99 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.96 2.10 -69.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116878063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.053 kcal (2) G-P(sol) polarization free energy of solvation -71.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds