Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40068 * 125.93480 * 2 1 4 4 C 1.31626 * 108.10942 * 180.27129 * 3 2 1 5 5 C 1.48424 * 126.03550 * 179.74574 * 4 3 2 6 6 C 1.39328 * 120.11501 * 179.76572 * 5 4 3 7 7 C 1.38024 * 119.87557 * 179.78851 * 6 5 4 8 8 C 1.38318 * 120.11626 * 0.46615 * 7 6 5 9 9 C 1.38313 * 120.24525 * 359.78458 * 8 7 6 10 10 C 1.38021 * 120.11993 * 359.97438 * 9 8 7 11 11 C 1.40841 * 107.92284 * 359.78108 * 4 3 2 12 12 C 1.35038 * 125.92750 * 179.89075 * 2 1 3 13 13 C 1.50701 * 126.01162 * 359.97438 * 12 2 1 14 14 N 1.46901 * 109.46921 * 274.71351 * 13 12 2 15 15 C 1.46958 * 111.00296 * 293.79820 * 14 13 12 16 16 C 1.53046 * 109.36205 * 176.81187 * 15 14 13 17 17 N 1.46955 * 109.36588 * 58.40292 * 16 15 14 18 18 C 1.46905 * 111.00275 * 176.80373 * 17 16 15 19 19 C 1.50694 * 109.47548 * 293.80481 * 18 17 16 20 20 H 1.08006 * 119.99830 * 359.97438 * 19 18 17 21 21 C 1.37869 * 120.00297 * 179.97438 * 19 18 17 22 22 N 1.31520 * 120.00128 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00328 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47035 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47516 * 120.00040 * 23 21 19 26 26 H 1.48501 * 109.47442 * 240.00366 * 23 21 19 27 27 C 1.46957 * 110.88307 * 300.67504 * 17 16 15 28 28 C 1.46955 * 110.99835 * 169.99883 * 14 13 12 29 29 H 1.09004 * 109.47163 * 270.11167 * 1 2 3 30 30 H 1.09003 * 109.46879 * 30.10834 * 1 2 3 31 31 H 1.08988 * 109.47400 * 150.10926 * 1 2 3 32 32 H 1.07998 * 120.05840 * 0.02562 * 6 5 4 33 33 H 1.07992 * 119.93838 * 180.23006 * 7 6 5 34 34 H 1.08005 * 119.87486 * 179.77033 * 8 7 6 35 35 H 1.08005 * 119.94004 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.06065 * 180.02562 * 10 9 8 37 37 H 1.08003 * 126.07258 * 179.97438 * 11 4 3 38 38 H 1.09002 * 109.47060 * 34.71532 * 13 12 2 39 39 H 1.09001 * 109.47380 * 154.71620 * 13 12 2 40 40 H 1.08997 * 109.48699 * 296.77801 * 15 14 13 41 41 H 1.08993 * 109.48441 * 56.84652 * 15 14 13 42 42 H 1.08997 * 109.49681 * 298.43123 * 16 15 14 43 43 H 1.09001 * 109.50181 * 178.37863 * 16 15 14 44 44 H 1.09006 * 109.46634 * 53.79910 * 18 17 16 45 45 H 1.08993 * 109.47424 * 173.79743 * 18 17 16 46 46 H 0.96997 * 120.00281 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.48667 * 299.35680 * 27 17 16 48 48 H 1.08993 * 109.48792 * 179.28632 * 27 17 16 49 49 H 1.09002 * 109.49170 * 303.15690 * 28 14 13 50 50 H 1.08998 * 109.49232 * 63.21899 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2870 1.1341 0.0000 4 6 3.5401 0.7312 -0.0059 5 6 4.7387 1.6065 -0.0134 6 6 6.0140 1.0455 -0.0143 7 6 7.1252 1.8641 -0.0257 8 6 6.9744 3.2390 -0.0265 9 6 5.7107 3.8013 -0.0204 10 6 4.5926 2.9920 -0.0140 11 6 3.5425 -0.6772 -0.0047 12 6 2.2573 -1.0935 0.0021 13 6 1.7901 -2.5262 0.0054 14 7 1.5306 -2.9535 1.3867 15 6 2.7745 -2.9929 2.1683 16 6 2.4516 -3.3643 3.6175 17 7 1.7729 -4.6674 3.6470 18 6 1.5134 -5.0947 5.0284 19 6 2.8222 -5.3600 5.7265 20 1 3.7538 -5.2250 5.1969 21 6 2.8306 -5.7749 7.0412 22 7 1.6963 -5.9397 7.6861 23 14 4.4531 -6.1044 7.9064 24 1 5.5754 -5.8472 6.9686 25 1 4.5773 -5.2081 9.0838 26 1 4.4966 -7.5194 8.3548 27 6 0.5290 -4.6279 2.8655 28 6 0.8519 -4.2565 1.4162 29 1 -0.3634 0.0020 1.0277 30 1 -0.3633 0.8890 -0.5155 31 1 -0.3633 -0.8909 -0.5121 32 1 6.1328 -0.0279 -0.0099 33 1 8.1142 1.4303 -0.0301 34 1 7.8466 3.8760 -0.0317 35 1 5.5986 4.8755 -0.0214 36 1 3.6063 3.4320 -0.0096 37 1 4.4165 -1.3117 -0.0089 38 1 0.8741 -2.6110 -0.5794 39 1 2.5607 -3.1607 -0.4325 40 1 3.4474 -3.7377 1.7434 41 1 3.2519 -2.0135 2.1416 42 1 1.8004 -2.6052 4.0511 43 1 3.3756 -3.4224 4.1928 44 1 0.9728 -4.3090 5.5562 45 1 0.9146 -6.0054 5.0206 46 1 1.7021 -6.2320 8.6109 47 1 -0.1440 -3.8832 3.2904 48 1 0.0516 -5.6074 2.8922 49 1 -0.0723 -4.1984 0.8412 50 1 1.5030 -5.0156 0.9827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143010769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = 96.929101 kcal Electronic energy + Delta-G solvation = -28929.615011 eV Core-core repulsion = 25150.457584 eV Total energy + Delta-G solvation = -3779.157427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.32948 -40.13813 -39.71865 -36.82627 -34.82922 -34.48107 -32.38546 -31.86343 -31.67607 -31.53603 -29.77359 -27.63898 -27.24636 -25.32092 -24.47931 -23.92946 -23.42473 -23.12531 -21.22637 -20.65398 -20.29143 -18.51026 -18.06479 -17.41503 -17.14862 -16.64884 -16.34825 -16.08559 -15.90162 -15.84548 -15.80832 -15.39985 -15.15834 -14.91279 -14.70210 -14.46794 -14.23212 -14.12694 -14.11366 -13.62924 -13.29531 -13.26518 -13.24319 -13.15084 -12.85768 -12.71255 -12.39313 -12.27672 -12.16436 -12.12009 -12.06081 -11.90526 -11.54073 -11.49290 -11.19532 -10.78105 -10.63816 -9.84203 -9.73110 -9.36929 -9.11642 -9.05014 -8.22297 -6.32525 0.02703 0.51429 0.92935 1.40254 1.40338 1.54289 1.57564 1.89400 2.39136 2.95168 3.04788 3.10070 3.28826 3.40865 3.54109 3.87916 3.97258 4.08849 4.12875 4.15159 4.20720 4.30088 4.34214 4.37744 4.42899 4.48246 4.55399 4.59319 4.59695 4.67522 4.68078 4.72538 4.76353 4.86990 4.95601 4.98740 5.02501 5.04696 5.11300 5.18498 5.20346 5.27028 5.43417 5.61687 5.62484 5.64161 5.71930 5.93707 5.96159 6.04706 6.08685 6.10954 6.31233 6.61590 6.69608 6.83539 7.37416 8.89193 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.010452 B = 0.002645 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.167005 B =10584.747880 C =12577.328490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.361 5.361 3 N -0.319 5.319 4 C 0.096 3.904 5 C -0.036 4.036 6 C -0.105 4.105 7 C -0.123 4.123 8 C -0.115 4.115 9 C -0.127 4.127 10 C -0.112 4.112 11 C -0.268 4.268 12 C 0.101 3.899 13 C 0.119 3.881 14 N -0.543 5.543 15 C 0.074 3.926 16 C 0.073 3.927 17 N -0.542 5.542 18 C 0.209 3.791 19 C -0.522 4.522 20 H 0.063 0.937 21 C 0.000 4.000 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.276 1.276 27 C 0.052 3.948 28 C 0.073 3.927 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.158 0.842 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.005 0.995 43 H 0.064 0.936 44 H -0.044 1.044 45 H 0.007 0.993 46 H 0.264 0.736 47 H 0.018 0.982 48 H 0.075 0.925 49 H 0.109 0.891 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 14.766 -22.205 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.143 5.143 3 N -0.143 5.143 4 C -0.066 4.066 5 C -0.038 4.038 6 C -0.125 4.125 7 C -0.141 4.141 8 C -0.134 4.134 9 C -0.144 4.144 10 C -0.131 4.131 11 C -0.298 4.298 12 C -0.027 4.027 13 C -0.009 4.009 14 N -0.269 5.269 15 C -0.054 4.054 16 C -0.056 4.056 17 N -0.266 5.266 18 C 0.082 3.918 19 C -0.560 4.560 20 H 0.081 0.919 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.794 3.206 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.202 1.202 27 C -0.076 4.076 28 C -0.054 4.054 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.136 0.864 37 H 0.176 0.824 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.024 0.976 43 H 0.083 0.917 44 H -0.027 1.027 45 H 0.025 0.975 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.093 0.907 49 H 0.127 0.873 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.221 15.684 -22.051 27.251 hybrid contribution 0.622 -0.884 1.274 1.671 sum 3.843 14.799 -20.778 25.797 Atomic orbital electron populations 1.22092 0.72391 1.05727 1.04036 1.48627 1.07583 1.02653 1.55462 1.77423 1.01487 1.08730 1.26611 1.20912 0.91592 0.93427 1.00674 1.18064 0.90313 0.92262 1.03135 1.21367 0.91034 1.01099 0.98957 1.21432 0.99193 0.93908 0.99564 1.21622 0.97986 0.95509 0.98265 1.21384 0.92187 1.00834 1.00039 1.21323 0.99709 0.92635 0.99470 1.21405 0.97200 0.93750 1.17448 1.21072 0.90678 0.90816 1.00157 1.20709 1.02884 0.87422 0.89884 1.62087 1.23862 1.29430 1.11537 1.22035 0.90824 1.00542 0.91991 1.21905 0.98369 0.88784 0.96503 1.62236 1.23117 1.27280 1.14011 1.19348 0.95734 0.92856 0.83828 1.21475 0.93302 1.44711 0.96524 0.91916 1.25934 1.00343 0.95245 0.98238 1.70094 1.27792 1.48171 1.11532 0.85330 0.79216 0.77868 0.78203 1.18581 1.20549 1.20202 1.22202 0.91046 1.00042 0.94344 1.22120 0.99679 0.88517 0.95098 0.90889 0.88660 0.86882 0.84652 0.83208 0.83180 0.83774 0.86425 0.82409 0.86828 0.90524 0.93556 0.90413 0.97623 0.91748 1.02656 0.97514 0.92677 0.96366 0.90653 0.87290 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.60 11.26 127.77 1.44 3.04 16 2 N -0.36 -8.76 4.01 -356.15 -1.43 -10.19 16 3 N -0.32 -9.19 12.24 -48.15 -0.59 -9.78 16 4 C 0.10 2.64 6.99 42.53 0.30 2.93 16 5 C -0.04 -0.88 5.88 -20.04 -0.12 -0.99 16 6 C -0.10 -2.10 9.58 22.48 0.22 -1.89 16 7 C -0.12 -1.95 10.03 22.24 0.22 -1.73 16 8 C -0.12 -1.70 10.04 22.31 0.22 -1.47 16 9 C -0.13 -2.17 10.03 22.24 0.22 -1.94 16 10 C -0.11 -2.52 9.69 22.48 0.22 -2.30 16 11 C -0.27 -6.60 8.97 22.18 0.20 -6.40 16 12 C 0.10 2.34 5.67 41.34 0.23 2.58 16 13 C 0.12 2.24 5.13 85.56 0.44 2.67 16 14 N -0.54 -13.78 4.70 -900.29 -4.23 -18.02 16 15 C 0.07 2.28 5.40 86.31 0.47 2.74 16 16 C 0.07 2.97 5.43 86.31 0.47 3.44 16 17 N -0.54 -23.70 4.70 -900.31 -4.23 -27.93 16 18 C 0.21 11.39 4.72 85.55 0.40 11.79 16 19 C -0.52 -30.04 8.47 25.60 0.22 -29.82 16 20 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16 21 C 0.00 0.01 5.46 84.65 0.46 0.48 16 22 N -0.94 -57.07 13.29 21.45 0.28 -56.79 16 23 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.05 1.82 5.61 86.31 0.48 2.30 16 28 C 0.07 1.81 5.61 86.31 0.48 2.30 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 1.20 7.12 -2.39 -0.02 1.18 16 32 H 0.14 2.35 7.04 -2.91 -0.02 2.33 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.12 2.74 7.85 -2.91 -0.02 2.71 16 37 H 0.16 3.31 7.34 -2.91 -0.02 3.28 16 38 H 0.11 1.50 7.10 -2.39 -0.02 1.48 16 39 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 2.37 6.38 -2.39 -0.02 2.35 16 42 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.06 2.86 6.79 -2.39 -0.02 2.84 16 44 H -0.04 -2.67 8.12 -2.38 -0.02 -2.69 16 45 H 0.01 0.39 8.03 -2.39 -0.02 0.37 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 49 H 0.11 1.94 8.07 -2.39 -0.02 1.92 16 50 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -73.99 402.25 -0.67 -74.67 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.92 Total: 13.55 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 6.58 Total: -12.27 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -10.20 Total: -122.70 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -73.99 -0.67 -74.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143010769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.598 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds