Wall clock time and date at job start Sat Apr 11 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00090 * 2 1 4 4 H 1.48500 * 109.47099 * 275.55287 * 3 2 1 5 5 H 1.48498 * 109.47176 * 35.54834 * 3 2 1 6 6 H 1.48494 * 109.47425 * 155.55247 * 3 2 1 7 7 C 1.38810 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99928 * 336.55450 * 7 2 1 9 9 N 1.36936 * 120.00210 * 156.54962 * 7 2 1 10 10 C 1.43423 * 120.63803 * 320.50444 * 9 7 2 11 11 C 1.55332 * 116.23590 * 269.37868 * 10 9 7 12 12 C 1.55198 * 108.87095 * 319.46003 * 11 10 9 13 13 O 1.39637 * 110.57085 * 322.15012 * 12 11 10 14 14 C 1.42377 * 108.64129 * 101.17015 * 13 12 11 15 15 H 1.08998 * 108.50953 * 28.48447 * 14 13 12 16 16 C 1.52993 * 108.62432 * 146.34019 * 14 13 12 17 17 N 1.46500 * 109.47360 * 304.24157 * 16 14 13 18 18 C 1.34773 * 120.00473 * 179.97438 * 17 16 14 19 19 O 1.21287 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.00238 * 180.02562 * 18 17 16 21 21 C 1.53005 * 109.47336 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47171 * 179.97438 * 21 20 18 23 23 H 1.08993 * 109.48271 * 305.00211 * 22 21 20 24 24 C 1.53090 * 109.47979 * 184.97258 * 22 21 20 25 25 C 1.53181 * 109.16425 * 182.41769 * 24 22 21 26 26 C 1.53182 * 109.04266 * 56.96910 * 25 24 22 27 27 C 1.53092 * 109.16079 * 303.02803 * 26 25 24 28 28 O 1.42903 * 109.47853 * 65.02378 * 22 21 20 29 29 C 1.46917 * 113.78912 * 267.45640 * 14 13 12 30 30 H 0.97001 * 119.99783 * 359.97438 * 1 2 3 31 31 H 1.08999 * 108.13167 * 147.61526 * 10 9 7 32 32 H 1.09000 * 107.96166 * 31.00212 * 10 9 7 33 33 H 1.08997 * 109.56945 * 199.64755 * 11 10 9 34 34 H 1.08996 * 109.57425 * 79.27476 * 11 10 9 35 35 H 1.09006 * 109.25388 * 82.42477 * 12 11 10 36 36 H 1.08997 * 109.25790 * 201.86371 * 12 11 10 37 37 H 1.09008 * 109.47140 * 64.23893 * 16 14 13 38 38 H 1.09002 * 109.47476 * 184.23901 * 16 14 13 39 39 H 0.97004 * 120.00100 * 0.02562 * 17 16 14 40 40 H 1.09002 * 109.47140 * 300.00141 * 20 18 17 41 41 H 1.08996 * 109.47669 * 59.99909 * 20 18 17 42 42 H 1.09002 * 109.47035 * 300.00100 * 21 20 18 43 43 H 1.08998 * 109.47133 * 60.00071 * 21 20 18 44 44 H 1.08993 * 109.52689 * 302.31973 * 24 22 21 45 45 H 1.09012 * 109.51950 * 62.50977 * 24 22 21 46 46 H 1.08996 * 109.53897 * 297.10658 * 25 24 22 47 47 H 1.09002 * 109.62044 * 176.88196 * 25 24 22 48 48 H 1.08994 * 109.52491 * 183.12074 * 26 25 24 49 49 H 1.09001 * 109.57454 * 62.95755 * 26 25 24 50 50 H 1.09004 * 109.48204 * 297.61844 * 27 26 25 51 51 H 1.09003 * 109.47972 * 177.59483 * 27 26 25 52 52 H 1.09003 * 109.98806 * 297.48708 * 29 14 13 53 53 H 1.08993 * 109.99366 * 176.11814 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3804 2.1141 -1.3935 5 1 1.5112 2.6160 0.8140 6 1 3.6015 1.4092 0.5794 7 6 2.0103 -1.2021 0.0005 8 1 1.5372 -2.0986 0.3731 9 7 3.2949 -1.2513 -0.4714 10 6 3.6759 -0.5015 -1.6331 11 6 3.5337 -1.2300 -2.9976 12 6 3.9997 -2.7011 -2.8323 13 8 5.1011 -2.7736 -1.9770 14 6 4.6536 -3.1980 -0.6938 15 1 3.7629 -3.8126 -0.8237 16 6 5.7477 -4.0546 -0.0535 17 7 6.0841 -5.1654 -0.9475 18 6 7.0297 -6.0563 -0.5891 19 8 7.6025 -5.9383 0.4734 20 6 7.3761 -7.1986 -1.5090 21 6 8.4701 -8.0554 -0.8687 22 6 8.8214 -9.2154 -1.8024 23 1 7.9173 -9.7743 -2.0438 24 6 9.8249 -10.1417 -1.1106 25 6 10.2174 -11.2666 -2.0734 26 6 10.7833 -10.6511 -3.3569 27 6 9.7427 -9.7051 -3.9618 28 8 9.3992 -8.7016 -3.0041 29 6 4.3311 -2.0913 0.2172 30 1 -0.4850 0.8401 0.0004 31 1 4.7170 -0.2006 -1.5162 32 1 3.0660 0.4013 -1.6655 33 1 4.1534 -0.7323 -3.7435 34 1 2.4911 -1.2108 -3.3149 35 1 3.1831 -3.2923 -2.4177 36 1 4.2746 -3.1028 -3.8075 37 1 6.6344 -3.4439 0.1168 38 1 5.3902 -4.4492 0.8977 39 1 5.6268 -5.2592 -1.7978 40 1 6.4897 -7.8096 -1.6794 41 1 7.7334 -6.8037 -2.4600 42 1 9.3567 -7.4446 -0.6979 43 1 8.1124 -8.4504 0.0822 44 1 10.7128 -9.5742 -0.8323 45 1 9.3698 -10.5693 -0.2170 46 1 9.3383 -11.8648 -2.3129 47 1 10.9734 -11.8993 -1.6083 48 1 11.0139 -11.4428 -4.0697 49 1 11.6910 -10.0938 -3.1252 50 1 8.8507 -10.2706 -4.2316 51 1 10.1561 -9.2315 -4.8523 52 1 5.2236 -1.4967 0.4118 53 1 3.9317 -2.4830 1.1526 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150395648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:45 Heat of formation + Delta-G solvation = -137.723199 kcal Electronic energy + Delta-G solvation = -30331.184681 eV Core-core repulsion = 26202.250297 eV Total energy + Delta-G solvation = -4128.934385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20753 -40.55520 -40.01924 -37.06330 -36.01137 -34.88339 -34.50355 -33.86873 -33.55301 -31.24517 -30.34971 -27.75277 -27.20975 -26.28142 -24.82186 -23.98445 -22.56929 -22.48279 -21.85056 -21.27440 -20.92817 -18.85883 -18.21930 -17.57303 -17.54397 -17.37943 -17.16506 -16.75781 -16.30634 -16.08156 -15.86189 -15.70090 -15.49319 -15.31568 -14.95033 -14.68253 -14.53584 -14.40732 -14.23727 -14.01372 -13.78075 -13.67070 -13.56600 -13.11572 -12.98825 -12.85626 -12.70759 -12.64173 -12.34135 -12.13007 -12.06539 -12.02520 -11.81677 -11.74903 -11.62996 -11.55347 -11.32485 -11.16663 -10.90735 -10.60144 -10.43248 -10.30047 -10.04995 -8.75856 -8.24473 -5.64524 1.28755 1.38900 1.50076 1.70599 2.24141 2.39432 2.88958 2.92654 3.02394 3.21320 3.69255 3.80701 3.94918 3.97541 4.00516 4.03221 4.09063 4.18535 4.21720 4.27767 4.34748 4.38695 4.39351 4.51268 4.57568 4.58560 4.63062 4.67304 4.71196 4.72936 4.79465 4.83918 4.90109 4.96144 4.98089 5.04340 5.08172 5.11409 5.11838 5.16667 5.17256 5.21830 5.26926 5.30406 5.42855 5.47741 5.92182 6.13024 6.30335 6.37866 6.60666 6.95448 7.30207 7.57589 8.05738 8.94444 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.001876 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.971493 B =14920.450177 C =15345.043027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.010 4.010 3 Si 0.937 3.063 4 H -0.279 1.279 5 H -0.306 1.306 6 H -0.266 1.266 7 C -0.257 4.257 8 H 0.047 0.953 9 N -0.610 5.610 10 C 0.144 3.856 11 C -0.167 4.167 12 C 0.069 3.931 13 O -0.355 6.355 14 C 0.075 3.925 15 H 0.068 0.932 16 C 0.126 3.874 17 N -0.713 5.713 18 C 0.508 3.492 19 O -0.590 6.590 20 C -0.128 4.128 21 C -0.092 4.092 22 C 0.093 3.907 23 H 0.073 0.927 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.157 4.157 27 C 0.054 3.946 28 O -0.399 6.399 29 C 0.110 3.890 30 H 0.264 0.736 31 H 0.041 0.959 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.413 0.587 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.099 0.901 52 H 0.050 0.950 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.169 -22.640 -9.555 31.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.207 4.207 3 Si 0.766 3.234 4 H -0.206 1.206 5 H -0.235 1.235 6 H -0.191 1.191 7 C -0.387 4.387 8 H 0.065 0.935 9 N -0.334 5.334 10 C 0.017 3.983 11 C -0.207 4.207 12 C -0.008 4.008 13 O -0.273 6.273 14 C 0.015 3.985 15 H 0.086 0.914 16 C 0.001 3.999 17 N -0.365 5.365 18 C 0.296 3.704 19 O -0.471 6.471 20 C -0.167 4.167 21 C -0.130 4.130 22 C 0.035 3.965 23 H 0.091 0.909 24 C -0.190 4.190 25 C -0.160 4.160 26 C -0.194 4.194 27 C -0.022 4.022 28 O -0.319 6.319 29 C -0.014 4.014 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.250 0.750 40 H 0.135 0.865 41 H 0.126 0.874 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.117 0.883 52 H 0.068 0.932 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.649 -22.204 -8.849 30.942 hybrid contribution -0.637 1.108 0.026 1.278 sum 19.012 -21.096 -8.823 29.738 Atomic orbital electron populations 1.69985 1.07471 1.27478 1.53316 1.26050 0.95519 1.00818 0.98332 0.85935 0.79336 0.80945 0.77138 1.20590 1.23459 1.19083 1.18592 0.88066 0.93131 1.38876 0.93533 1.44197 1.06860 1.55971 1.26346 1.20722 0.97109 0.93269 0.87203 1.23456 1.00636 0.98336 0.98303 1.22462 0.88341 0.95336 0.94706 1.87609 1.30977 1.88559 1.20136 1.21703 0.95861 0.95077 0.85832 0.91440 1.21427 0.97674 0.87495 0.93301 1.45853 1.40365 1.27071 1.23184 1.21338 0.78188 0.83743 0.87108 1.90678 1.53461 1.76469 1.26469 1.21620 1.01470 0.94688 0.98928 1.21311 0.98096 0.95831 0.97792 1.22150 0.95426 0.94030 0.84873 0.90894 1.22208 0.99860 0.97456 0.99479 1.21605 1.01623 0.97256 0.95483 1.22194 0.99136 0.99832 0.98257 1.22723 0.97627 0.90395 0.91451 1.87925 1.81966 1.34201 1.27818 1.21204 0.91906 0.92636 0.95622 0.92728 0.94082 0.96390 0.90188 0.92984 0.93315 0.88358 0.91944 0.90330 0.75043 0.86484 0.87399 0.92578 0.90015 0.92204 0.90017 0.90958 0.90895 0.89438 0.92083 0.92179 0.88281 0.93170 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.97 21.65 0.30 -56.94 16 2 C -0.01 -0.54 5.27 84.86 0.45 -0.10 16 3 Si 0.94 46.33 25.24 68.60 1.73 48.06 16 4 H -0.28 -13.31 6.74 99.48 0.67 -12.64 16 5 H -0.31 -15.26 7.11 99.48 0.71 -14.55 16 6 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.26 -14.00 9.93 84.03 0.83 -13.16 16 8 H 0.05 2.77 8.06 -2.91 -0.02 2.75 16 9 N -0.61 -27.65 2.16 -706.00 -1.52 -29.17 16 10 C 0.14 6.08 4.31 87.75 0.38 6.46 16 11 C -0.17 -5.77 6.75 32.15 0.22 -5.55 16 12 C 0.07 2.01 6.38 72.74 0.46 2.47 16 13 O -0.35 -10.67 9.34 -137.16 -1.28 -11.95 16 14 C 0.07 2.26 2.16 28.70 0.06 2.32 16 15 H 0.07 2.10 6.76 -2.39 -0.02 2.08 16 16 C 0.13 3.40 5.27 86.38 0.45 3.86 16 17 N -0.71 -16.27 5.40 -463.06 -2.50 -18.77 16 18 C 0.51 12.36 7.83 87.66 0.69 13.05 16 19 O -0.59 -19.33 15.98 -3.05 -0.05 -19.38 16 20 C -0.13 -2.10 5.60 29.85 0.17 -1.93 16 21 C -0.09 -1.62 4.21 30.60 0.13 -1.49 16 22 C 0.09 1.30 2.64 30.62 0.08 1.38 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 C -0.15 -1.90 5.42 30.68 0.17 -1.73 16 25 C -0.12 -1.16 6.03 30.72 0.19 -0.98 16 26 C -0.16 -1.50 6.14 30.69 0.19 -1.31 16 27 C 0.05 0.60 6.84 72.01 0.49 1.10 16 28 O -0.40 -6.63 9.94 -148.98 -1.48 -8.11 16 29 C 0.11 4.06 5.58 83.78 0.47 4.53 16 30 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.04 1.65 7.99 -2.39 -0.02 1.63 16 32 H 0.02 0.85 3.44 -2.39 -0.01 0.84 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.52 6.66 -2.38 -0.02 1.51 16 36 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.41 7.61 8.19 -92.71 -0.76 6.85 16 40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.11 1.67 7.82 -2.39 -0.02 1.66 16 42 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 43 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 51 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 53 H 0.08 2.97 8.00 -2.39 -0.02 2.95 16 Total: -1.00 -70.20 405.03 0.71 -69.49 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.08 Total: 17.86 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 5.42 Total: 8.90 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.72 Total: -104.88 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -2.81 Total: -39.43 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.73 Total: 48.06 kcal Total: -70.20 0.71 -69.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150395648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.233 kcal (2) G-P(sol) polarization free energy of solvation -70.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds