Wall clock time and date at job start Sat Apr 11 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48505 * 109.47146 * 240.00233 * 3 2 1 5 5 H 1.48498 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46853 * 120.00386 * 3 2 1 7 7 C 1.38811 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99873 * 195.46614 * 7 2 1 9 9 N 1.36938 * 120.00453 * 15.46490 * 7 2 1 10 10 C 1.47513 * 118.75197 * 26.09327 * 9 7 2 11 11 C 1.53580 * 111.02025 * 138.37604 * 10 9 7 12 12 C 1.51534 * 109.58248 * 320.01899 * 11 10 9 13 13 O 1.42157 * 108.76095 * 91.40523 * 12 11 10 14 14 C 1.38011 * 119.43633 * 272.77763 * 13 12 11 15 15 H 1.09008 * 109.46860 * 303.42480 * 14 13 12 16 16 C 1.52997 * 109.47369 * 183.42902 * 14 13 12 17 17 N 1.46502 * 109.47008 * 64.99590 * 16 14 13 18 18 C 1.34774 * 120.00078 * 180.02562 * 17 16 14 19 19 O 1.21287 * 120.00066 * 359.97438 * 18 17 16 20 20 C 1.50693 * 120.00244 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.47469 * 179.97438 * 20 18 17 22 22 C 1.52996 * 109.47363 * 180.02562 * 21 20 18 23 23 H 1.08997 * 109.48146 * 55.00042 * 22 21 20 24 24 C 1.53093 * 109.48001 * 175.02583 * 22 21 20 25 25 C 1.53202 * 109.15000 * 177.59352 * 24 22 21 26 26 C 1.53179 * 109.04388 * 303.02410 * 25 24 22 27 27 C 1.53092 * 109.16159 * 56.97794 * 26 25 24 28 28 O 1.42902 * 109.41864 * 302.39698 * 27 26 25 29 29 C 1.45119 * 118.76131 * 206.09804 * 9 7 2 30 30 H 0.97005 * 119.99965 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.16694 * 17.97826 * 10 9 7 32 32 H 1.08998 * 109.12816 * 258.74220 * 10 9 7 33 33 H 1.09005 * 109.44710 * 199.98718 * 11 10 9 34 34 H 1.08999 * 109.45097 * 80.06069 * 11 10 9 35 35 H 1.09000 * 109.59249 * 331.61960 * 12 11 10 36 36 H 1.09000 * 109.58785 * 211.18064 * 12 11 10 37 37 H 1.09000 * 109.46707 * 305.00238 * 16 14 13 38 38 H 1.09002 * 109.47471 * 185.00043 * 16 14 13 39 39 H 0.96996 * 120.00225 * 0.02562 * 17 16 14 40 40 H 1.08998 * 109.47311 * 60.00142 * 20 18 17 41 41 H 1.08993 * 109.47508 * 299.99859 * 20 18 17 42 42 H 1.09006 * 109.46984 * 59.99618 * 21 20 18 43 43 H 1.09002 * 109.47195 * 300.00447 * 21 20 18 44 44 H 1.09007 * 109.52345 * 297.50786 * 24 22 21 45 45 H 1.09003 * 109.52420 * 57.70038 * 24 22 21 46 46 H 1.09005 * 109.53977 * 183.15494 * 25 24 22 47 47 H 1.08998 * 109.61463 * 62.94121 * 25 24 22 48 48 H 1.09007 * 109.51856 * 297.07841 * 26 25 24 49 49 H 1.08995 * 109.52476 * 176.88552 * 26 25 24 50 50 H 1.08994 * 109.48126 * 182.41216 * 27 26 25 51 51 H 1.09006 * 109.48943 * 62.38275 * 27 26 25 52 52 H 1.08997 * 109.46294 * 149.26764 * 29 9 7 53 53 H 1.09002 * 109.45796 * 29.30719 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0610 -1.2192 0.2489 9 7 1.3628 -2.3665 -0.3173 10 6 0.1710 -2.3025 -1.1842 11 6 0.1767 -3.4423 -2.2135 12 6 1.5841 -3.6477 -2.7360 13 8 2.2337 -4.6214 -1.9293 14 6 2.8926 -4.2232 -0.7839 15 1 3.6427 -3.4742 -1.0380 16 6 3.5762 -5.4322 -0.1421 17 7 4.6225 -5.9333 -1.0368 18 6 5.3618 -7.0013 -0.6773 19 8 5.1613 -7.5472 0.3871 20 6 6.4385 -7.5165 -1.5972 21 6 7.1221 -8.7256 -0.9556 22 6 8.2156 -9.2483 -1.8893 23 1 8.9035 -8.4386 -2.1324 24 6 8.9815 -10.3782 -1.1963 25 6 10.0343 -10.9362 -2.1593 26 6 9.3400 -11.4053 -3.4416 27 6 8.5601 -10.2356 -4.0476 28 8 7.6201 -9.7444 -3.0899 29 6 1.8749 -3.6166 0.2126 30 1 -0.4850 0.8401 0.0004 31 1 0.1606 -1.3469 -1.7083 32 1 -0.7241 -2.3819 -0.5673 33 1 -0.4843 -3.1866 -3.0418 34 1 -0.1728 -4.3601 -1.7407 35 1 2.1331 -2.7073 -2.6870 36 1 1.5436 -3.9963 -3.7680 37 1 2.8394 -6.2167 0.0307 38 1 4.0213 -5.1361 0.8078 39 1 4.7831 -5.4966 -1.8878 40 1 7.1754 -6.7320 -1.7693 41 1 5.9938 -7.8120 -2.5474 42 1 6.3854 -9.5103 -0.7830 43 1 7.5669 -8.4297 -0.0054 44 1 9.4729 -9.9912 -0.3035 45 1 8.2874 -11.1708 -0.9166 46 1 10.5457 -11.7781 -1.6926 47 1 10.7585 -10.1581 -2.4005 48 1 8.6531 -12.2186 -3.2072 49 1 10.0877 -11.7529 -4.1545 50 1 8.0292 -10.5747 -4.9371 51 1 9.2525 -9.4387 -4.3192 52 1 1.0502 -4.3141 0.3589 53 1 2.3675 -3.4317 1.1673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150395649.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:47 Heat of formation + Delta-G solvation = -146.003927 kcal Electronic energy + Delta-G solvation = -30201.071036 eV Core-core repulsion = 26071.777572 eV Total energy + Delta-G solvation = -4129.293464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.02288 -40.43102 -39.98011 -37.00620 -35.93778 -34.87969 -34.49924 -33.63930 -33.40818 -31.25408 -29.97964 -27.54899 -27.12555 -26.32389 -24.87508 -24.12843 -22.53862 -22.29345 -21.44174 -21.23326 -20.90122 -18.86741 -18.15939 -17.66516 -17.46659 -17.30967 -16.87333 -16.64471 -16.46247 -16.28629 -15.73135 -15.54146 -15.47339 -15.30459 -14.79238 -14.62544 -14.51121 -14.39114 -14.14974 -13.71025 -13.57525 -13.46814 -13.12664 -13.01006 -12.97694 -12.80003 -12.73272 -12.49594 -12.40353 -12.12793 -12.09717 -12.06042 -11.81355 -11.76477 -11.55239 -11.48799 -11.31533 -11.16269 -10.87509 -10.53555 -10.30712 -10.26586 -10.04846 -8.72833 -7.89514 -5.36974 1.46434 1.47480 1.54568 1.70988 2.24016 2.49837 2.76754 2.89377 3.25521 3.55920 3.69860 3.81174 3.96356 4.00342 4.06044 4.10118 4.14449 4.19065 4.22102 4.34594 4.36285 4.39603 4.50145 4.54310 4.59334 4.62998 4.68035 4.72359 4.74547 4.80469 4.86003 4.89863 4.91945 4.96592 5.04602 5.12003 5.14342 5.16962 5.18620 5.22153 5.24547 5.30906 5.43232 5.46201 5.48749 5.60583 5.74616 6.35043 6.38306 6.61680 6.75092 7.13725 7.30568 7.85901 8.27429 9.16029 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.001881 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.831577 B =14881.442840 C =15232.025158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.270 4.270 8 H 0.068 0.932 9 N -0.605 5.605 10 C 0.186 3.814 11 C -0.165 4.165 12 C 0.092 3.908 13 O -0.392 6.392 14 C 0.087 3.913 15 H 0.046 0.954 16 C 0.142 3.858 17 N -0.714 5.714 18 C 0.508 3.492 19 O -0.590 6.590 20 C -0.127 4.127 21 C -0.092 4.092 22 C 0.093 3.907 23 H 0.073 0.927 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.156 4.156 27 C 0.054 3.946 28 O -0.399 6.399 29 C 0.122 3.878 30 H 0.250 0.750 31 H 0.047 0.953 32 H -0.008 1.008 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.414 0.586 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.087 0.913 50 H 0.099 0.901 51 H 0.060 0.940 52 H 0.041 0.959 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.180 -19.251 -10.249 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.400 4.400 8 H 0.086 0.914 9 N -0.327 5.327 10 C 0.061 3.939 11 C -0.204 4.204 12 C 0.016 3.984 13 O -0.311 6.311 14 C 0.026 3.974 15 H 0.064 0.936 16 C 0.017 3.983 17 N -0.366 5.366 18 C 0.296 3.704 19 O -0.471 6.471 20 C -0.167 4.167 21 C -0.130 4.130 22 C 0.035 3.965 23 H 0.091 0.909 24 C -0.190 4.190 25 C -0.160 4.160 26 C -0.194 4.194 27 C -0.022 4.022 28 O -0.319 6.319 29 C -0.006 4.006 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.010 0.990 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.250 0.750 40 H 0.135 0.865 41 H 0.126 0.874 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.106 0.894 50 H 0.117 0.883 51 H 0.078 0.922 52 H 0.059 0.941 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.680 -19.668 -9.562 28.761 hybrid contribution -0.049 1.643 0.250 1.662 sum 18.631 -18.025 -9.311 27.545 Atomic orbital electron populations 1.70228 1.06614 1.25883 1.55291 1.25792 0.96036 1.01474 1.00951 0.85366 0.77559 0.79278 0.78377 1.20122 1.22204 1.20300 1.19477 0.92594 0.85875 1.42059 0.91422 1.44025 1.31553 1.02100 1.55048 1.20776 0.86958 0.96083 0.90118 1.22632 0.98848 0.99175 0.99723 1.22075 0.91271 0.91601 0.93484 1.86106 1.70557 1.37945 1.36509 1.22276 0.93633 0.94398 0.87126 0.93569 1.21146 0.89415 0.94812 0.92929 1.45932 1.35717 1.31840 1.23095 1.21364 0.82755 0.79115 0.87167 1.90674 1.70873 1.59215 1.26362 1.21618 0.96556 0.99564 0.98915 1.21312 0.97397 0.96528 0.97788 1.22147 0.94124 0.95299 0.84900 0.90920 1.22212 0.98562 0.98749 0.99467 1.21610 0.97447 1.01417 0.95494 1.22195 1.00235 0.98721 0.98248 1.22725 0.92438 0.95597 0.91451 1.87926 1.34715 1.81373 1.27899 1.21571 0.95767 0.87782 0.95435 0.94117 0.93454 0.98967 0.89674 0.92238 0.94083 0.87375 0.91994 0.90474 0.75016 0.86517 0.87361 0.92532 0.90030 0.90029 0.92172 0.90881 0.90963 0.92058 0.89407 0.88259 0.92204 0.94071 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.44 11.00 21.65 0.24 -54.20 16 2 C -0.05 -2.56 4.89 84.86 0.41 -2.15 16 3 Si 0.97 43.93 29.58 68.60 2.03 45.96 16 4 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.27 -14.37 9.46 84.03 0.80 -13.58 16 8 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 9 N -0.61 -29.54 2.23 -698.13 -1.55 -31.09 16 10 C 0.19 8.85 4.70 86.38 0.41 9.26 16 11 C -0.16 -5.98 5.78 30.31 0.18 -5.80 16 12 C 0.09 3.00 6.37 71.50 0.46 3.46 16 13 O -0.39 -13.04 9.38 -117.82 -1.11 -14.15 16 14 C 0.09 2.96 2.68 31.21 0.08 3.05 16 15 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 16 C 0.14 4.27 5.34 86.38 0.46 4.73 16 17 N -0.71 -17.99 5.49 -463.06 -2.54 -20.53 16 18 C 0.51 13.22 7.83 87.66 0.69 13.91 16 19 O -0.59 -20.29 15.98 -3.05 -0.05 -20.34 16 20 C -0.13 -2.25 5.60 29.85 0.17 -2.08 16 21 C -0.09 -1.71 4.21 30.59 0.13 -1.58 16 22 C 0.09 1.37 2.64 30.62 0.08 1.45 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 C -0.15 -1.99 5.42 30.69 0.17 -1.82 16 25 C -0.12 -1.22 6.03 30.72 0.19 -1.03 16 26 C -0.16 -1.57 6.14 30.68 0.19 -1.38 16 27 C 0.05 0.63 6.84 72.01 0.49 1.12 16 28 O -0.40 -6.89 9.94 -148.98 -1.48 -8.37 16 29 C 0.12 5.05 5.12 87.26 0.45 5.50 16 30 H 0.25 14.18 8.31 -92.70 -0.77 13.40 16 31 H 0.05 2.50 6.37 -2.39 -0.02 2.49 16 32 H -0.01 -0.42 8.04 -2.39 -0.02 -0.44 16 33 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.06 2.15 8.01 -2.39 -0.02 2.13 16 35 H 0.04 1.54 7.40 -2.39 -0.02 1.52 16 36 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.41 8.62 8.46 -92.71 -0.78 7.84 16 40 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.11 1.81 7.82 -2.39 -0.02 1.79 16 42 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 43 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 44 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 49 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 52 H 0.04 1.70 8.11 -2.39 -0.02 1.68 16 53 H 0.05 2.11 7.98 -2.39 -0.02 2.09 16 Total: -1.00 -68.16 410.69 0.95 -67.21 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.08 Total: 22.46 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 5.33 Total: 13.05 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -3.86 Total: -105.83 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -2.64 Total: -42.86 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.16 0.95 -67.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150395649.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.793 kcal (2) G-P(sol) polarization free energy of solvation -68.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds