Wall clock time and date at job start Sat Apr 11 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 120.00392 * 2 1 4 4 H 1.48503 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47433 * 299.99893 * 3 2 1 6 6 H 1.48500 * 109.47180 * 60.00415 * 3 2 1 7 7 C 1.38815 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00171 * 160.67962 * 7 2 1 9 9 N 1.36938 * 119.99984 * 340.68346 * 7 2 1 10 10 C 1.43426 * 120.63498 * 155.68180 * 9 7 2 11 11 C 1.55328 * 116.23572 * 269.37276 * 10 9 7 12 12 C 1.55185 * 108.87637 * 319.46864 * 11 10 9 13 13 O 1.39641 * 110.56946 * 322.14172 * 12 11 10 14 14 C 1.42374 * 108.63686 * 101.17214 * 13 12 11 15 15 H 1.09002 * 108.62249 * 28.42753 * 14 13 12 16 16 C 1.52997 * 108.62254 * 146.34504 * 14 13 12 17 17 N 1.46502 * 109.47012 * 299.99660 * 16 14 13 18 18 C 1.34776 * 120.00427 * 179.97438 * 17 16 14 19 19 O 1.21285 * 119.99492 * 0.28456 * 18 17 16 20 20 C 1.50699 * 120.00259 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.46844 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.46884 * 179.97438 * 21 20 18 23 23 C 1.53170 * 109.54721 * 294.55890 * 22 21 20 24 24 C 1.53093 * 109.16536 * 183.15016 * 23 22 21 25 25 O 1.42904 * 109.41432 * 57.60776 * 24 23 22 26 26 C 1.42897 * 114.09849 * 298.84550 * 25 24 23 27 27 C 1.53087 * 109.42025 * 61.15487 * 26 25 24 28 28 C 1.46919 * 113.78966 * 267.45708 * 14 13 12 29 29 H 0.97007 * 119.99443 * 359.97438 * 1 2 3 30 30 H 1.09005 * 108.12661 * 147.61851 * 10 9 7 31 31 H 1.08994 * 107.96476 * 31.00727 * 10 9 7 32 32 H 1.09006 * 109.56680 * 199.64579 * 11 10 9 33 33 H 1.09002 * 109.57025 * 79.28817 * 11 10 9 34 34 H 1.09001 * 109.25627 * 201.86468 * 12 11 10 35 35 H 1.08996 * 109.25832 * 82.42641 * 12 11 10 36 36 H 1.09001 * 109.47082 * 180.02562 * 16 14 13 37 37 H 1.08991 * 109.47374 * 59.99935 * 16 14 13 38 38 H 0.97006 * 119.99807 * 0.02562 * 17 16 14 39 39 H 1.08997 * 109.46929 * 300.00050 * 20 18 17 40 40 H 1.09001 * 109.47130 * 60.00479 * 20 18 17 41 41 H 1.08991 * 109.47374 * 300.00010 * 21 20 18 42 42 H 1.09001 * 109.47082 * 60.00185 * 21 20 18 43 43 H 1.09002 * 109.54010 * 54.82804 * 22 21 20 44 44 H 1.09002 * 109.52391 * 303.05257 * 23 22 21 45 45 H 1.09001 * 109.52267 * 63.24542 * 23 22 21 46 46 H 1.08996 * 109.48162 * 297.62745 * 24 23 22 47 47 H 1.09002 * 109.48891 * 177.59521 * 24 23 22 48 48 H 1.09006 * 109.48240 * 301.17324 * 26 25 24 49 49 H 1.09001 * 109.49026 * 181.14630 * 26 25 24 50 50 H 1.08998 * 109.52907 * 182.48680 * 27 26 25 51 51 H 1.09008 * 109.52207 * 62.29824 * 27 26 25 52 52 H 1.08999 * 109.99586 * 176.11816 * 28 14 13 53 53 H 1.09003 * 109.99424 * 297.48936 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0446 -1.2285 -0.3100 9 7 1.3832 -2.3549 0.3912 10 6 1.8495 -3.6320 -0.0656 11 6 1.2151 -4.1648 -1.3795 12 6 -0.3042 -3.8487 -1.3677 13 8 -0.8284 -4.0076 -0.0831 14 6 -0.9696 -2.7223 0.5128 15 1 -1.1303 -1.9883 -0.2768 16 6 -2.2003 -2.7377 1.4216 17 7 -3.3902 -3.0521 0.6269 18 6 -4.5982 -3.1212 1.2205 19 8 -4.7009 -2.9179 2.4118 20 6 -5.8221 -3.4452 0.4032 21 6 -7.0529 -3.4605 1.3119 22 6 -8.2956 -3.7888 0.4819 23 6 -8.5572 -2.6585 -0.5181 24 6 -9.8456 -2.9579 -1.2891 25 8 -10.9274 -3.1055 -0.3672 26 6 -10.7597 -4.1778 0.5623 27 6 -9.5081 -3.9276 1.4077 28 6 0.1944 -2.3060 1.3067 29 1 -0.4850 0.8401 0.0004 30 1 1.6629 -4.3626 0.7217 31 1 2.9272 -3.5634 -0.2128 32 1 1.3634 -5.2427 -1.4455 33 1 1.6829 -3.6771 -2.2347 34 1 -0.8174 -4.5249 -2.0515 35 1 -0.4601 -2.8208 -1.6950 36 1 -2.3219 -1.7588 1.8853 37 1 -2.0706 -3.4934 2.1962 38 1 -3.3086 -3.2114 -0.3265 39 1 -5.9522 -2.6895 -0.3714 40 1 -5.7005 -4.4240 -0.0608 41 1 -6.9231 -4.2159 2.0868 42 1 -7.1743 -2.4815 1.7756 43 1 -8.1384 -4.7240 -0.0556 44 1 -8.6643 -1.7154 0.0178 45 1 -7.7228 -2.5893 -1.2161 46 1 -9.7235 -3.8802 -1.8569 47 1 -10.0598 -2.1360 -1.9723 48 1 -10.6495 -5.1162 0.0188 49 1 -11.6323 -4.2349 1.2130 50 1 -9.3537 -4.7658 2.0870 51 1 -9.6343 -3.0101 1.9826 52 1 0.0500 -1.2906 1.6758 53 1 0.3395 -2.9904 2.1426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150404052.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:52 Heat of formation + Delta-G solvation = -138.547769 kcal Electronic energy + Delta-G solvation = -30750.682322 eV Core-core repulsion = 26621.712181 eV Total energy + Delta-G solvation = -4128.970141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.11153 -40.49211 -39.99063 -36.81519 -36.44164 -35.85845 -33.86272 -33.04902 -32.19302 -31.77911 -30.25835 -27.74193 -27.07077 -26.23802 -24.47882 -24.25096 -22.88998 -22.39870 -21.33283 -21.06562 -20.87883 -18.94859 -18.13908 -17.70687 -17.02148 -16.99248 -16.89378 -16.65612 -16.60426 -16.16269 -15.72948 -15.62581 -15.51195 -15.43066 -14.92452 -14.71674 -14.45491 -14.33528 -14.12797 -13.68893 -13.56706 -13.29814 -13.17275 -13.11635 -12.94067 -12.86894 -12.64537 -12.50693 -12.27222 -12.23524 -12.11733 -11.93347 -11.77182 -11.72629 -11.38269 -11.23625 -11.18678 -11.14060 -10.88476 -10.57003 -10.40435 -10.26301 -10.03234 -8.72390 -7.90501 -5.30850 1.45717 1.51150 1.58427 1.71069 2.29116 2.51662 3.03243 3.11696 3.26965 3.50271 3.70457 3.73387 3.82873 4.05142 4.12172 4.16729 4.26629 4.27686 4.32301 4.37651 4.42290 4.44447 4.53162 4.56282 4.64391 4.70107 4.74503 4.77609 4.79725 4.83098 4.84910 4.92176 4.96391 4.98862 5.07919 5.09701 5.18352 5.19024 5.20363 5.22921 5.32925 5.34523 5.40508 5.45718 5.50980 5.54253 5.68026 6.32540 6.35636 6.52232 6.63301 7.10029 7.31452 7.82406 8.35343 9.15421 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.002177 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.593735 B =12857.597467 C =13513.958130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.038 4.038 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.261 4.261 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.153 3.847 11 C -0.165 4.165 12 C 0.068 3.932 13 O -0.366 6.366 14 C 0.081 3.919 15 H 0.086 0.914 16 C 0.133 3.867 17 N -0.710 5.710 18 C 0.502 3.498 19 O -0.595 6.595 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.084 4.084 23 C -0.154 4.154 24 C 0.057 3.943 25 O -0.410 6.410 26 C 0.058 3.942 27 C -0.152 4.152 28 C 0.144 3.856 29 H 0.250 0.750 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.411 0.589 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.099 0.901 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.057 0.943 52 H 0.077 0.923 53 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.291 -10.463 -4.653 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.234 4.234 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.025 3.975 11 C -0.206 4.206 12 C -0.010 4.010 13 O -0.285 6.285 14 C 0.022 3.978 15 H 0.103 0.897 16 C 0.008 3.992 17 N -0.361 5.361 18 C 0.291 3.709 19 O -0.476 6.476 20 C -0.170 4.170 21 C -0.129 4.129 22 C -0.102 4.102 23 C -0.191 4.191 24 C -0.020 4.020 25 O -0.329 6.329 26 C -0.018 4.018 27 C -0.189 4.189 28 C 0.019 3.981 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.247 0.753 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.081 0.919 49 H 0.118 0.882 50 H 0.101 0.899 51 H 0.076 0.924 52 H 0.095 0.905 53 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -17.610 -10.241 -3.708 20.706 hybrid contribution 1.198 1.278 -0.228 1.767 sum -16.412 -8.963 -3.936 19.110 Atomic orbital electron populations 1.69996 1.05811 1.25575 1.54857 1.25473 0.96079 1.00511 1.01316 0.85349 0.78540 0.80693 0.76592 1.19994 1.22006 1.22095 1.19431 0.93670 0.86314 1.39701 0.91908 1.44235 1.34548 1.01937 1.51562 1.20502 0.96006 0.86709 0.94233 1.23498 0.96736 1.00633 0.99742 1.22404 0.93770 1.00189 0.84604 1.87512 1.83303 1.28175 1.29487 1.21722 0.93466 0.84765 0.97859 0.89667 1.21307 0.84225 0.99675 0.94035 1.45898 1.06489 1.70836 1.12875 1.21533 0.85553 0.75607 0.88237 1.90663 1.86960 1.52041 1.17923 1.21754 0.90419 1.05777 0.99045 1.21274 0.92468 1.01810 0.97328 1.21196 0.93501 0.99443 0.96065 1.22325 0.98975 0.98696 0.99152 1.22718 0.85962 1.02226 0.91053 1.87898 1.44016 1.53727 1.47277 1.22691 0.98242 0.89601 0.91252 1.22239 0.95144 1.02814 0.98735 1.20676 0.86395 0.99991 0.91062 0.94029 0.94761 0.95133 0.90311 0.92736 0.89375 0.94524 0.92501 0.92741 0.75350 0.86910 0.86270 0.92240 0.93260 0.89281 0.92397 0.89156 0.91849 0.88318 0.91939 0.88233 0.89907 0.92374 0.90475 0.95947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.14 9.56 21.65 0.21 -47.94 16 2 C -0.04 -1.94 4.92 84.86 0.42 -1.53 16 3 Si 0.96 43.02 29.60 68.60 2.03 45.05 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.26 -13.60 9.61 84.03 0.81 -12.79 16 8 H 0.06 3.28 7.87 -2.91 -0.02 3.26 16 9 N -0.60 -28.66 2.61 -705.99 -1.84 -30.51 16 10 C 0.15 6.27 5.33 87.75 0.47 6.74 16 11 C -0.17 -5.69 6.75 32.14 0.22 -5.47 16 12 C 0.07 2.33 6.38 72.73 0.46 2.79 16 13 O -0.37 -13.43 9.54 -137.20 -1.31 -14.74 16 14 C 0.08 3.24 1.95 28.71 0.06 3.29 16 15 H 0.09 3.86 5.23 -2.39 -0.01 3.85 16 16 C 0.13 4.93 5.24 86.38 0.45 5.38 16 17 N -0.71 -21.45 5.43 -463.07 -2.52 -23.96 16 18 C 0.50 14.87 7.83 87.66 0.69 15.56 16 19 O -0.59 -22.92 15.98 -3.04 -0.05 -22.97 16 20 C -0.13 -2.42 5.47 29.85 0.16 -2.26 16 21 C -0.09 -1.76 3.98 30.59 0.12 -1.64 16 22 C -0.08 -1.19 2.27 -10.68 -0.02 -1.21 16 23 C -0.15 -2.14 5.10 30.68 0.16 -1.98 16 24 C 0.06 0.76 6.84 72.01 0.49 1.26 16 25 O -0.41 -7.41 10.77 -148.98 -1.60 -9.01 16 26 C 0.06 0.79 6.84 72.01 0.49 1.28 16 27 C -0.15 -2.19 5.42 30.68 0.17 -2.02 16 28 C 0.14 6.56 4.71 83.79 0.39 6.96 16 29 H 0.25 12.98 8.31 -92.70 -0.77 12.21 16 30 H 0.03 1.36 7.99 -2.38 -0.02 1.34 16 31 H 0.03 1.24 7.95 -2.39 -0.02 1.22 16 32 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.04 1.46 6.66 -2.39 -0.02 1.45 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.41 10.54 8.33 -92.70 -0.77 9.77 16 39 H 0.11 1.68 6.66 -2.39 -0.02 1.67 16 40 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 42 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 43 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 1.00 6.75 -2.39 -0.02 0.98 16 46 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 48 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 52 H 0.08 3.95 6.02 -2.39 -0.01 3.93 16 53 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -63.68 403.55 0.56 -63.12 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.11 Total: 26.60 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 5.53 Total: 14.36 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -4.15 Total: -102.41 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -2.96 Total: -46.72 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -63.68 0.56 -63.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150404052.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.431 kcal (2) G-P(sol) polarization free energy of solvation -63.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds