Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99611 * 2 1 4 4 H 1.48502 * 109.47148 * 269.99409 * 3 2 1 5 5 H 1.48496 * 109.47548 * 29.99962 * 3 2 1 6 6 H 1.48505 * 109.47114 * 150.00070 * 3 2 1 7 7 C 1.38814 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00063 * 195.51262 * 7 2 1 9 9 N 1.36937 * 119.99636 * 15.50698 * 7 2 1 10 10 C 1.44460 * 118.51019 * 206.09815 * 9 7 2 11 11 C 1.54873 * 109.33035 * 268.93853 * 10 9 7 12 12 C 1.47681 * 109.68340 * 290.10342 * 11 10 9 13 13 O 1.42488 * 113.65932 * 60.81372 * 12 11 10 14 14 C 1.40525 * 113.54937 * 272.22441 * 13 12 11 15 15 H 1.08995 * 109.40282 * 335.18507 * 14 13 12 16 16 C 1.52994 * 109.34099 * 215.38237 * 14 13 12 17 17 N 1.46506 * 109.47165 * 64.80024 * 16 14 13 18 18 C 1.34776 * 120.00287 * 179.97438 * 17 16 14 19 19 O 1.21282 * 119.99454 * 0.02562 * 18 17 16 20 20 C 1.50692 * 120.00073 * 179.97438 * 18 17 16 21 21 C 1.53006 * 109.47156 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.46725 * 180.02562 * 21 20 18 23 23 C 1.53171 * 109.54366 * 294.82050 * 22 21 20 24 24 C 1.53103 * 109.15675 * 183.24750 * 23 22 21 25 25 O 1.42904 * 109.49037 * 57.47670 * 24 23 22 26 26 C 1.42909 * 114.09340 * 298.88930 * 25 24 23 27 27 C 1.53093 * 109.41433 * 61.15585 * 26 25 24 28 28 C 1.48179 * 118.51544 * 26.12857 * 9 7 2 29 29 H 0.96996 * 120.00331 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.49755 * 28.90007 * 10 9 7 31 31 H 1.09003 * 109.48890 * 148.98588 * 10 9 7 32 32 H 1.08997 * 109.43762 * 50.17105 * 11 10 9 33 33 H 1.09006 * 109.43566 * 170.04051 * 11 10 9 34 34 H 1.09003 * 108.64669 * 181.87998 * 12 11 10 35 35 H 1.08998 * 108.64672 * 299.72163 * 12 11 10 36 36 H 1.09004 * 109.47270 * 184.79702 * 16 14 13 37 37 H 1.08999 * 109.47496 * 304.79882 * 16 14 13 38 38 H 0.97001 * 119.99486 * 359.97438 * 17 16 14 39 39 H 1.08997 * 109.47895 * 300.00492 * 20 18 17 40 40 H 1.09000 * 109.46891 * 60.00627 * 20 18 17 41 41 H 1.08995 * 109.47058 * 300.00110 * 21 20 18 42 42 H 1.09000 * 109.46832 * 60.00439 * 21 20 18 43 43 H 1.08996 * 109.54745 * 55.00232 * 22 21 20 44 44 H 1.09003 * 109.52544 * 303.06421 * 23 22 21 45 45 H 1.08997 * 109.52410 * 63.25153 * 23 22 21 46 46 H 1.08997 * 109.40481 * 297.48903 * 24 23 22 47 47 H 1.09001 * 109.49549 * 177.50936 * 24 23 22 48 48 H 1.08994 * 109.47852 * 301.17732 * 26 25 24 49 49 H 1.08992 * 109.48740 * 181.14572 * 26 25 24 50 50 H 1.09000 * 109.52127 * 182.48258 * 27 26 25 51 51 H 1.09006 * 109.57169 * 62.32697 * 27 26 25 52 52 H 1.09006 * 109.23289 * 18.45361 * 28 9 7 53 53 H 1.09001 * 109.19652 * 259.05964 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0609 -1.2190 0.2507 9 7 1.3630 -2.3666 -0.3160 10 6 1.8771 -3.6077 0.2154 11 6 2.8900 -4.2140 -0.7870 12 6 2.1761 -4.6909 -1.9886 13 8 1.4800 -3.6618 -2.6862 14 6 0.1734 -3.4487 -2.2150 15 1 -0.1931 -4.3587 -1.7401 16 6 -0.7365 -3.0868 -3.3905 17 7 -0.8295 -4.2274 -4.3053 18 6 -1.5828 -4.1382 -5.4193 19 8 -2.1832 -3.1134 -5.6648 20 6 -1.6779 -5.3112 -6.3605 21 6 -2.5880 -4.9494 -7.5361 22 6 -2.6851 -6.1407 -8.4913 23 6 -1.3125 -6.4102 -9.1154 24 6 -1.4368 -7.5505 -10.1295 25 8 -2.4079 -7.2047 -11.1192 26 6 -3.7209 -6.9887 -10.5978 27 6 -3.6888 -5.8244 -9.6043 28 6 0.1675 -2.2967 -1.1886 29 1 -0.4850 0.8400 -0.0004 30 1 2.3753 -3.4177 1.1660 31 1 1.0544 -4.3062 0.3685 32 1 3.6157 -3.4531 -1.0744 33 1 3.4087 -5.0500 -0.3176 34 1 2.8992 -5.1438 -2.6669 35 1 1.4590 -5.4547 -1.6877 36 1 -1.7302 -2.8381 -3.0178 37 1 -0.3220 -2.2291 -3.9203 38 1 -0.3489 -5.0469 -4.1091 39 1 -0.6843 -5.5594 -6.7336 40 1 -2.0919 -6.1693 -5.8309 41 1 -3.5816 -4.7011 -7.1633 42 1 -2.1736 -4.0915 -8.0656 43 1 -3.0154 -7.0224 -7.9422 44 1 -0.9595 -5.5115 -9.6213 45 1 -0.6059 -6.6909 -8.3344 46 1 -1.7492 -8.4596 -9.6156 47 1 -0.4724 -7.7174 -10.6093 48 1 -4.0632 -7.8904 -10.0901 49 1 -4.4019 -6.7508 -11.4148 50 1 -4.6801 -5.6866 -9.1726 51 1 -3.3859 -4.9129 -10.1197 52 1 0.1647 -1.3439 -1.7182 53 1 -0.7297 -2.3682 -0.5737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150404054.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = -146.436725 kcal Electronic energy + Delta-G solvation = -30395.386520 eV Core-core repulsion = 26266.074288 eV Total energy + Delta-G solvation = -4129.312232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.05026 -40.39127 -39.96149 -36.91980 -36.43289 -35.90584 -34.13694 -33.00792 -32.22457 -31.79961 -30.29833 -27.73249 -27.06024 -26.30878 -24.47979 -24.22938 -22.87915 -22.37184 -21.60038 -21.00770 -20.86765 -18.86513 -18.15261 -17.77684 -17.24670 -17.01418 -16.89924 -16.71875 -16.60084 -16.22335 -15.81628 -15.64440 -15.45040 -15.31960 -14.87318 -14.61883 -14.54655 -14.20926 -14.20545 -13.85543 -13.65138 -13.33650 -13.16944 -13.09053 -13.02658 -12.86865 -12.77575 -12.44503 -12.31264 -12.23556 -12.11394 -11.99449 -11.80867 -11.72524 -11.45422 -11.36022 -11.23319 -11.13751 -10.92026 -10.57249 -10.39882 -10.25759 -10.10954 -8.68630 -7.87372 -5.32264 1.42185 1.45608 1.52470 1.68555 2.19141 2.50194 2.92683 3.03820 3.26215 3.57644 3.68989 3.72987 3.82475 4.03031 4.04837 4.12098 4.13585 4.21439 4.27084 4.28728 4.31550 4.44427 4.47095 4.53790 4.58555 4.62164 4.64596 4.70290 4.79679 4.83278 4.84961 4.88587 4.88947 4.93275 4.96561 5.10025 5.14923 5.20255 5.22168 5.23342 5.26888 5.33530 5.43992 5.51930 5.52803 5.60655 5.69940 6.33168 6.38376 6.58228 6.60109 7.15774 7.30528 7.92378 8.29692 9.17240 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019041 B = 0.002014 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.189937 B =13896.966354 C =14684.773943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.960 3.040 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.258 4.258 8 H 0.062 0.938 9 N -0.603 5.603 10 C 0.147 3.853 11 C -0.171 4.171 12 C 0.068 3.932 13 O -0.378 6.378 14 C 0.079 3.921 15 H 0.076 0.924 16 C 0.136 3.864 17 N -0.710 5.710 18 C 0.502 3.498 19 O -0.595 6.595 20 C -0.128 4.128 21 C -0.093 4.093 22 C -0.083 4.083 23 C -0.153 4.153 24 C 0.056 3.944 25 O -0.411 6.411 26 C 0.059 3.941 27 C -0.153 4.153 28 C 0.171 3.829 29 H 0.248 0.752 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.415 0.585 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.063 0.937 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.056 0.944 52 H 0.040 0.960 53 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -22.227 -16.014 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.789 3.211 4 H -0.219 1.219 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.389 4.389 8 H 0.080 0.920 9 N -0.325 5.325 10 C 0.021 3.979 11 C -0.211 4.211 12 C -0.008 4.008 13 O -0.296 6.296 14 C 0.019 3.981 15 H 0.094 0.906 16 C 0.010 3.990 17 N -0.362 5.362 18 C 0.290 3.710 19 O -0.476 6.476 20 C -0.168 4.168 21 C -0.132 4.132 22 C -0.101 4.101 23 C -0.191 4.191 24 C -0.020 4.020 25 O -0.330 6.330 26 C -0.018 4.018 27 C -0.191 4.191 28 C 0.045 3.955 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.252 0.748 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.081 0.919 49 H 0.116 0.884 50 H 0.100 0.900 51 H 0.075 0.925 52 H 0.059 0.941 53 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -4.044 -21.281 -16.491 27.225 hybrid contribution 0.366 1.445 0.919 1.751 sum -3.677 -19.836 -15.573 25.485 Atomic orbital electron populations 1.70175 1.06351 1.25579 1.55967 1.25706 0.96090 1.01240 1.01571 0.85375 0.78320 0.80185 0.77253 1.21906 1.22057 1.19223 1.19453 0.92413 0.86370 1.40679 0.92016 1.43820 1.31635 1.02775 1.54259 1.20923 0.95199 0.86976 0.94851 1.22153 0.99706 1.01024 0.98198 1.21572 0.96460 0.88462 0.94337 1.87433 1.26189 1.58653 1.57351 1.22723 0.83467 0.98893 0.93042 0.90587 1.21150 0.98510 0.89344 0.89965 1.45848 1.49820 1.17308 1.23234 1.21612 0.77430 0.90209 0.81711 1.90700 1.47488 1.34043 1.75362 1.21757 1.04058 0.95705 0.95251 1.21295 0.99387 0.97660 0.94819 1.21190 0.95433 0.98237 0.95270 1.22328 0.97683 0.99535 0.99532 1.22732 0.92684 0.96462 0.90163 1.87904 1.19536 1.90375 1.35182 1.22680 0.84104 0.97200 0.97769 1.22245 1.00473 0.99199 0.97146 1.21391 0.87971 0.96173 0.89939 0.94291 0.94101 0.93550 0.94015 0.88458 0.88489 0.91704 0.91283 0.93847 0.74794 0.86518 0.85780 0.92400 0.93463 0.89087 0.92540 0.88762 0.91780 0.88289 0.91857 0.88414 0.90035 0.92531 0.94132 0.97065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 10.98 21.65 0.24 -55.83 16 2 C -0.05 -2.91 4.88 84.86 0.41 -2.50 16 3 Si 0.96 46.50 29.58 68.60 2.03 48.53 16 4 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.26 -14.36 9.43 84.03 0.79 -13.57 16 8 H 0.06 3.39 7.88 -2.91 -0.02 3.36 16 9 N -0.60 -29.71 2.59 -696.44 -1.80 -31.51 16 10 C 0.15 5.69 5.68 87.40 0.50 6.19 16 11 C -0.17 -5.25 6.03 29.57 0.18 -5.07 16 12 C 0.07 1.80 6.04 70.32 0.42 2.23 16 13 O -0.38 -13.18 9.76 -144.91 -1.41 -14.60 16 14 C 0.08 2.78 2.35 31.03 0.07 2.85 16 15 H 0.08 2.25 7.20 -2.39 -0.02 2.23 16 16 C 0.14 4.64 5.23 86.38 0.45 5.09 16 17 N -0.71 -17.89 5.49 -463.06 -2.54 -20.43 16 18 C 0.50 13.22 7.83 87.65 0.69 13.91 16 19 O -0.60 -22.07 15.98 -3.03 -0.05 -22.12 16 20 C -0.13 -1.92 5.46 29.85 0.16 -1.76 16 21 C -0.09 -1.62 3.98 30.60 0.12 -1.50 16 22 C -0.08 -1.01 2.27 -10.68 -0.02 -1.03 16 23 C -0.15 -1.77 5.10 30.69 0.16 -1.61 16 24 C 0.06 0.64 6.84 72.02 0.49 1.14 16 25 O -0.41 -6.87 10.77 -148.98 -1.60 -8.47 16 26 C 0.06 0.73 6.84 72.01 0.49 1.22 16 27 C -0.15 -2.03 5.42 30.69 0.17 -1.87 16 28 C 0.17 8.20 4.50 86.50 0.39 8.59 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.04 1.63 7.97 -2.39 -0.02 1.61 16 31 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 1.37 7.28 -2.39 -0.02 1.36 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.42 7.50 8.46 -92.71 -0.78 6.72 16 39 H 0.12 1.26 6.65 -2.39 -0.02 1.24 16 40 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 42 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 0.74 6.74 -2.39 -0.02 0.72 16 46 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 52 H 0.04 2.27 6.24 -2.38 -0.01 2.25 16 53 H 0.01 0.59 8.02 -2.39 -0.02 0.57 16 Total: -1.00 -75.89 407.40 0.42 -75.47 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.09 Total: 16.66 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.48 Total: 12.31 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.11 Total: -107.78 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -3.07 Total: -45.19 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -75.89 0.42 -75.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150404054.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.969 kcal (2) G-P(sol) polarization free energy of solvation -75.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds