Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00304 * 2 1 4 4 H 1.48507 * 109.46929 * 240.00115 * 3 2 1 5 5 H 1.48494 * 109.47082 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47166 * 120.00229 * 3 2 1 7 7 C 1.38820 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00079 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47159 * 176.66026 * 10 9 7 12 12 C 1.52995 * 115.55247 * 297.24232 * 11 10 9 13 13 C 1.53003 * 109.46886 * 295.45995 * 12 11 10 14 14 N 1.46507 * 109.46924 * 185.09820 * 13 12 11 15 15 C 1.34770 * 119.99639 * 179.97438 * 14 13 12 16 16 O 1.21290 * 120.00532 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99943 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.47228 * 180.02562 * 17 15 14 19 19 O 1.42909 * 109.47083 * 179.97438 * 18 17 15 20 20 C 1.42895 * 113.99587 * 179.97438 * 19 18 17 21 21 C 1.53009 * 109.46727 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.87021 * 54.29631 * 21 20 19 23 23 C 1.54095 * 109.87914 * 175.30875 * 21 20 19 24 24 C 1.54807 * 104.18996 * 121.45109 * 23 21 20 25 25 C 1.54995 * 102.09322 * 20.88022 * 24 23 21 26 26 O 1.43745 * 109.87712 * 293.29285 * 21 20 19 27 27 C 1.53004 * 117.49804 * 82.90732 * 11 10 9 28 28 C 1.52996 * 117.49915 * 151.56539 * 11 10 9 29 29 H 0.97001 * 119.99578 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00047 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46937 * 56.66205 * 10 9 7 32 32 H 1.08996 * 109.46920 * 296.65878 * 10 9 7 33 33 H 1.08996 * 109.47343 * 175.46012 * 12 11 10 34 34 H 1.09007 * 109.47348 * 55.45518 * 12 11 10 35 35 H 1.09002 * 109.47378 * 65.10241 * 13 12 11 36 36 H 1.08995 * 109.47327 * 305.09926 * 13 12 11 37 37 H 0.97001 * 119.99939 * 0.02562 * 14 13 12 38 38 H 1.08995 * 109.47154 * 60.00247 * 17 15 14 39 39 H 1.09003 * 109.47271 * 299.99884 * 17 15 14 40 40 H 1.08995 * 109.46991 * 59.99976 * 18 17 15 41 41 H 1.08996 * 109.46812 * 299.99670 * 18 17 15 42 42 H 1.09003 * 109.47185 * 299.99401 * 20 19 18 43 43 H 1.09002 * 109.47426 * 60.00698 * 20 19 18 44 44 H 1.08999 * 110.48520 * 240.13193 * 23 21 20 45 45 H 1.09001 * 110.48695 * 2.77203 * 23 21 20 46 46 H 1.09004 * 110.90561 * 139.07509 * 24 23 21 47 47 H 1.08996 * 110.90650 * 262.67864 * 24 23 21 48 48 H 1.09004 * 110.61891 * 81.47338 * 25 24 23 49 49 H 1.08998 * 110.62193 * 204.31884 * 25 24 23 50 50 H 1.09000 * 117.50100 * 215.00183 * 27 11 10 51 51 H 1.09005 * 117.49558 * 0.02562 * 27 11 10 52 52 H 1.08998 * 117.50080 * 359.97438 * 28 11 10 53 53 H 1.09002 * 117.49508 * 144.97294 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0658 -4.8186 0.0835 12 6 0.2198 -4.8731 1.3571 13 6 1.1293 -5.1154 2.5634 14 7 0.3101 -5.2889 3.7656 15 6 0.8999 -5.5164 4.9558 16 8 2.1089 -5.5771 5.0319 17 6 0.0573 -5.6955 6.1923 18 6 0.9668 -5.9377 7.3986 19 8 0.1677 -6.1069 8.5713 20 6 0.9239 -6.3408 9.7610 21 6 -0.0291 -6.5068 10.9465 22 1 -0.7596 -7.2858 10.7285 23 6 0.7686 -6.8757 12.2123 24 6 0.4311 -5.7466 13.2161 25 6 -0.8941 -5.1856 12.6403 26 8 -0.7030 -5.2646 11.2095 27 6 0.4124 -5.2852 -1.2190 28 6 1.4815 -6.1496 -0.5460 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.7287 -3.6891 0.8580 32 1 2.6389 -3.7410 -0.9189 33 1 -0.5034 -5.6847 1.2785 34 1 -0.3075 -3.9275 1.4839 35 1 1.7925 -4.2606 2.6960 36 1 1.7235 -6.0137 2.3959 37 1 -0.6568 -5.2408 3.7047 38 1 -0.6059 -6.5502 6.0594 39 1 -0.5369 -4.7972 6.3603 40 1 1.6296 -5.0827 7.5313 41 1 1.5612 -6.8358 7.2309 42 1 1.5168 -7.2478 9.6422 43 1 1.5865 -5.4946 9.9427 44 1 0.4433 -7.8410 12.6003 45 1 1.8374 -6.8898 11.9991 46 1 0.2805 -6.1489 14.2179 47 1 1.2086 -4.9827 13.2180 48 1 -1.7380 -5.8033 12.9475 49 1 -1.0420 -4.1523 12.9541 50 1 -0.6200 -5.6311 -1.1684 51 1 0.6898 -4.7648 -2.1357 52 1 2.4617 -6.1976 -1.0203 53 1 1.1528 -7.0642 -0.0524 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165933464.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = -131.365874 kcal Electronic energy + Delta-G solvation = -28781.716515 eV Core-core repulsion = 24653.057805 eV Total energy + Delta-G solvation = -4128.658710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92758 -40.47335 -39.54951 -38.57443 -36.09549 -35.75649 -33.43036 -32.99553 -32.78570 -31.48887 -30.55722 -27.77997 -26.40429 -25.27796 -24.63496 -23.76198 -23.00874 -22.94649 -21.96470 -21.45457 -19.94472 -19.04096 -18.47158 -17.70012 -17.43679 -17.16707 -16.90450 -16.77842 -16.60223 -16.49998 -16.23836 -15.90790 -15.53555 -15.12777 -14.92501 -14.85180 -14.57184 -14.52238 -14.26365 -13.87281 -13.77597 -13.24859 -13.14047 -13.01224 -12.77514 -12.67367 -12.54631 -12.43101 -12.32457 -12.28159 -12.21515 -12.19552 -12.03755 -11.93533 -11.85838 -11.57776 -11.12626 -11.01232 -10.87885 -10.66868 -10.65791 -10.54704 -10.10738 -8.97493 -7.95320 -5.22564 1.44860 1.47740 1.53695 1.57609 1.95774 2.53588 2.74044 2.91507 2.94115 3.37315 3.60804 3.71013 3.80774 3.82125 3.86906 3.96043 3.99996 4.01284 4.07234 4.09959 4.19261 4.23536 4.32830 4.39950 4.44532 4.46932 4.50013 4.52070 4.59790 4.64478 4.77214 4.80747 4.81023 4.84646 4.90774 4.95277 4.95810 4.99115 5.06700 5.09331 5.18014 5.19880 5.27550 5.34160 5.36753 5.44514 5.48060 5.93420 6.15792 6.27112 6.51905 7.20515 7.34241 8.10826 8.36613 9.27610 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.001766 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.803187 B =15852.416411 C =17707.093942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.187 3.813 11 C -0.143 4.143 12 C -0.074 4.074 13 C 0.133 3.867 14 N -0.715 5.715 15 C 0.513 3.487 16 O -0.589 6.589 17 C -0.129 4.129 18 C 0.081 3.919 19 O -0.397 6.397 20 C 0.058 3.942 21 C 0.074 3.926 22 H 0.076 0.924 23 C -0.146 4.146 24 C -0.152 4.152 25 C 0.033 3.967 26 O -0.400 6.400 27 C -0.164 4.164 28 C -0.149 4.149 29 H 0.251 0.749 30 H 0.377 0.623 31 H 0.015 0.985 32 H 0.012 0.988 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.417 0.583 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.097 0.903 50 H 0.110 0.890 51 H 0.079 0.921 52 H 0.095 0.905 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -20.945 22.639 31.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.377 5.377 10 C 0.061 3.939 11 C -0.144 4.144 12 C -0.111 4.111 13 C 0.009 3.991 14 N -0.367 5.367 15 C 0.301 3.699 16 O -0.470 6.470 17 C -0.169 4.169 18 C 0.004 3.996 19 O -0.317 6.317 20 C -0.018 4.018 21 C 0.016 3.984 22 H 0.094 0.906 23 C -0.183 4.183 24 C -0.189 4.189 25 C -0.043 4.043 26 O -0.320 6.320 27 C -0.201 4.201 28 C -0.186 4.186 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.254 0.746 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.118 0.882 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.128 0.872 51 H 0.098 0.902 52 H 0.113 0.887 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.483 -20.717 22.513 30.695 hybrid contribution 0.174 1.416 -0.209 1.442 sum -2.310 -19.301 22.303 29.586 Atomic orbital electron populations 1.69793 1.06327 1.26040 1.59337 1.25495 0.96440 1.00792 1.03746 0.85270 0.77302 0.79514 0.78032 1.20421 1.21838 1.20855 1.19561 0.91307 0.85629 1.41420 0.91321 1.42408 1.05623 1.00566 1.89123 1.20244 0.92705 0.84197 0.96786 1.21431 1.01969 0.96135 0.94880 1.21073 0.96775 1.02529 0.90773 1.21127 0.93733 1.00516 0.83685 1.45915 1.11462 1.72186 1.07148 1.20902 0.88288 0.75232 0.85469 1.90699 1.16674 1.52743 1.86869 1.21414 0.98784 1.06968 0.89690 1.22038 0.92657 1.00603 0.84321 1.87826 1.34518 1.93256 1.16094 1.22922 0.93878 1.01062 0.83949 1.22897 0.94122 0.87109 0.94267 0.90588 1.22959 1.01592 1.00553 0.93224 1.23145 0.97417 0.98153 1.00224 1.23822 0.97831 1.02749 0.79872 1.89013 1.78893 1.39592 1.24483 1.23002 0.98890 1.03140 0.95088 1.23090 0.99630 0.93348 1.02517 0.93994 0.79083 0.96686 0.96967 0.88472 0.92507 0.94691 0.91201 0.74638 0.85287 0.86950 0.94102 0.92330 0.90027 0.93177 0.88227 0.89381 0.87902 0.90696 0.91096 0.88528 0.87219 0.90226 0.88684 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.44 13.06 21.65 0.28 -59.15 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.25 -14.27 9.99 84.04 0.84 -13.43 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.73 -38.03 5.44 -343.45 -1.87 -39.89 16 10 C 0.19 7.79 5.89 86.38 0.51 8.30 16 11 C -0.14 -4.46 1.57 -52.18 -0.08 -4.55 16 12 C -0.07 -2.06 5.10 30.59 0.16 -1.91 16 13 C 0.13 3.93 5.39 86.38 0.47 4.39 16 14 N -0.72 -17.44 5.56 -463.04 -2.57 -20.01 16 15 C 0.51 13.85 7.83 87.66 0.69 14.54 16 16 O -0.59 -21.14 15.98 -3.06 -0.05 -21.19 16 17 C -0.13 -2.55 6.07 29.85 0.18 -2.37 16 18 C 0.08 1.81 5.23 71.98 0.38 2.19 16 19 O -0.40 -9.01 10.33 -147.06 -1.52 -10.53 16 20 C 0.06 1.03 5.39 71.99 0.39 1.42 16 21 C 0.07 1.16 3.70 30.97 0.11 1.27 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 C -0.15 -1.31 6.64 31.58 0.21 -1.10 16 24 C -0.15 -1.31 7.16 31.89 0.23 -1.08 16 25 C 0.03 0.42 7.72 72.66 0.56 0.98 16 26 O -0.40 -8.39 11.19 -147.06 -1.65 -10.04 16 27 C -0.16 -4.49 9.94 30.62 0.30 -4.19 16 28 C -0.15 -3.54 9.95 30.62 0.30 -3.24 16 29 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.38 20.42 7.11 -92.71 -0.66 19.76 16 31 H 0.02 0.66 7.17 -2.39 -0.02 0.65 16 32 H 0.01 0.53 8.11 -2.39 -0.02 0.51 16 33 H 0.10 2.02 8.10 -2.39 -0.02 2.00 16 34 H 0.06 1.92 7.53 -2.38 -0.02 1.90 16 35 H 0.03 1.33 7.27 -2.39 -0.02 1.31 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.42 7.42 8.47 -92.71 -0.79 6.64 16 38 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 41 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.09 0.67 7.70 -2.39 -0.02 0.65 16 46 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 50 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 51 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 52 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -76.91 431.44 -0.19 -77.10 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.56 Total: 36.79 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.71 Total: -2.52 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -4.16 Total: -119.06 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -3.21 Total: -41.76 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -76.91 -0.19 -77.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165933464.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.261 kcal (2) G-P(sol) polarization free energy of solvation -76.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds