Wall clock time and date at job start Sat Apr 11 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48498 * 109.47201 * 270.00272 * 3 2 1 5 5 H 1.48500 * 109.47122 * 29.99992 * 3 2 1 6 6 H 1.48496 * 109.47417 * 149.99847 * 3 2 1 7 7 C 1.38811 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00293 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99881 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99949 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46704 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46863 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.47300 * 180.02562 * 12 11 10 14 14 C 1.46504 * 119.99871 * 269.99978 * 13 12 11 15 15 C 1.53006 * 109.46986 * 279.64225 * 14 13 12 16 16 C 1.54269 * 110.03013 * 294.87593 * 15 14 13 17 17 C 1.54963 * 104.15678 * 217.13729 * 16 15 14 18 18 C 1.54882 * 102.77778 * 37.89093 * 17 16 15 19 19 C 1.53877 * 110.03092 * 177.66159 * 15 14 13 20 20 C 1.34778 * 120.00506 * 89.99964 * 13 12 11 21 21 O 1.21277 * 119.99603 * 6.39467 * 20 13 12 22 22 C 1.50700 * 120.00165 * 186.39609 * 20 13 12 23 23 H 1.08994 * 109.52359 * 317.16052 * 22 20 13 24 24 C 1.53143 * 109.52396 * 77.29446 * 22 20 13 25 25 O 1.43073 * 109.14906 * 175.28156 * 24 22 20 26 26 C 1.43080 * 113.59361 * 302.04126 * 25 24 22 27 27 C 1.53147 * 109.14621 * 57.95222 * 26 25 24 28 28 O 1.43069 * 109.20608 * 304.65793 * 27 26 25 29 29 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00176 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.46874 * 60.00198 * 10 9 7 32 32 H 1.09001 * 109.46958 * 300.00011 * 10 9 7 33 33 H 1.09006 * 109.47085 * 60.00298 * 11 10 9 34 34 H 1.08995 * 109.47540 * 299.99900 * 11 10 9 35 35 H 1.09000 * 109.47382 * 59.99759 * 12 11 10 36 36 H 1.09009 * 109.47086 * 300.00161 * 12 11 10 37 37 H 1.08997 * 109.46761 * 39.64061 * 14 13 12 38 38 H 1.08996 * 109.47491 * 159.64410 * 14 13 12 39 39 H 1.08996 * 110.01569 * 56.26867 * 15 14 13 40 40 H 1.08996 * 110.48988 * 335.78675 * 16 15 14 41 41 H 1.09005 * 110.48158 * 98.42798 * 16 15 14 42 42 H 1.09007 * 110.71904 * 279.57578 * 17 16 15 43 43 H 1.09002 * 110.91870 * 156.30293 * 17 16 15 44 44 H 1.09005 * 110.48833 * 203.40260 * 18 17 16 45 45 H 1.08998 * 110.60016 * 80.81841 * 18 17 16 46 46 H 1.09000 * 110.03152 * 238.57405 * 19 15 14 47 47 H 1.09000 * 110.03024 * 359.97438 * 19 15 14 48 48 H 1.08993 * 109.52543 * 55.37277 * 24 22 20 49 49 H 1.09000 * 109.52331 * 295.17788 * 24 22 20 50 50 H 1.09002 * 109.52380 * 298.05960 * 26 25 24 51 51 H 1.08991 * 109.58261 * 177.88938 * 26 25 24 52 52 H 1.09007 * 109.52112 * 64.59416 * 27 26 25 53 53 H 1.09001 * 109.51847 * 184.71868 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6164 -2.1913 0.0000 12 6 6.3814 -3.5163 0.0007 13 7 7.8217 -3.2486 0.0013 14 6 8.5424 -3.1151 -1.2672 15 6 8.8475 -4.5051 -1.8292 16 6 9.8214 -5.2511 -0.8939 17 6 10.7426 -6.0409 -1.8578 18 6 10.9322 -5.0537 -3.0361 19 6 9.5532 -4.3798 -3.1909 20 6 8.4838 -3.1252 1.1687 21 8 7.9141 -3.3498 2.2155 22 6 9.9319 -2.7082 1.1733 23 1 10.4657 -3.2369 0.3836 24 6 10.0306 -1.1985 0.9358 25 8 11.3980 -0.7937 1.0511 26 6 11.9837 -1.1087 2.3179 27 6 11.8849 -2.6184 2.5554 28 8 10.5178 -3.0244 2.4411 29 1 -0.4850 0.8401 0.0004 30 1 3.8647 -0.3621 -0.0004 31 1 3.8485 -3.0426 -0.8897 32 1 3.8491 -3.0423 0.8902 33 1 5.8797 -1.6197 0.8901 34 1 5.8797 -1.6197 -0.8899 35 1 6.1182 -4.0883 -0.8891 36 1 6.1180 -4.0875 0.8909 37 1 7.9277 -2.5627 -1.9779 38 1 9.4760 -2.5780 -1.0999 39 1 7.9244 -5.0743 -1.9380 40 1 10.4036 -4.5422 -0.3053 41 1 9.2763 -5.9332 -0.2413 42 1 10.2545 -6.9555 -2.1949 43 1 11.6985 -6.2666 -1.3852 44 1 11.1980 -5.5920 -3.9459 45 1 11.6944 -4.3123 -2.7963 46 1 8.9730 -4.8890 -3.9604 47 1 9.6779 -3.3288 -3.4514 48 1 9.4310 -0.6729 1.6790 49 1 9.6637 -0.9622 -0.0630 50 1 11.4498 -0.5801 3.1076 51 1 13.0310 -0.8071 2.3213 52 1 12.4845 -3.1441 1.8121 53 1 12.2530 -2.8549 3.5538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177225195.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:23 Heat of formation + Delta-G solvation = -137.563106 kcal Electronic energy + Delta-G solvation = -31538.319768 eV Core-core repulsion = 27409.392325 eV Total energy + Delta-G solvation = -4128.927443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97645 -40.32754 -39.11663 -37.64480 -37.11052 -36.36221 -34.31677 -33.10247 -32.00484 -30.63983 -29.58674 -29.32621 -27.26255 -26.30304 -25.45412 -24.26281 -22.89036 -22.53180 -21.61834 -20.86870 -20.19113 -19.63686 -18.83153 -18.10193 -17.83696 -17.24084 -16.86494 -16.64781 -16.50854 -16.45780 -16.13197 -15.95478 -15.69709 -15.57577 -15.01232 -14.85028 -14.62435 -14.50423 -14.25669 -14.17976 -13.95391 -13.56967 -13.47454 -13.07705 -12.92436 -12.82730 -12.67747 -12.50435 -12.13574 -12.05364 -11.99555 -11.95158 -11.90902 -11.86316 -11.84828 -11.77019 -11.67913 -11.46939 -11.26851 -10.99713 -10.75315 -10.32065 -9.76213 -9.33623 -8.05470 -5.39770 1.31298 1.35590 1.39896 1.47130 1.56524 2.46349 2.57427 2.69089 3.25447 3.27189 3.37081 3.53314 3.59962 3.70424 3.77829 3.81332 3.90236 3.99971 4.03107 4.11762 4.17128 4.24139 4.33664 4.38657 4.40029 4.48070 4.51051 4.57254 4.62014 4.68596 4.71866 4.73528 4.76301 4.82657 4.87836 4.89534 4.91329 5.04580 5.12954 5.20791 5.25387 5.29804 5.33258 5.44525 5.50244 5.54040 5.72495 5.78787 5.81365 6.18675 6.24448 6.98804 7.04698 7.80419 7.99883 9.16152 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.002982 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.821278 B = 9387.030842 C =10859.623787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.257 1.257 7 C -0.240 4.240 8 H 0.056 0.944 9 N -0.760 5.760 10 C 0.157 3.843 11 C -0.126 4.126 12 C 0.126 3.874 13 N -0.596 5.596 14 C 0.098 3.902 15 C -0.108 4.108 16 C -0.128 4.128 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.116 4.116 20 C 0.519 3.481 21 O -0.565 6.565 22 C 0.035 3.965 23 H 0.122 0.878 24 C 0.038 3.962 25 O -0.377 6.377 26 C 0.015 3.985 27 C 0.018 3.982 28 O -0.385 6.385 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.039 0.961 32 H 0.014 0.986 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.051 0.949 49 H 0.132 0.868 50 H 0.056 0.944 51 H 0.139 0.861 52 H 0.080 0.920 53 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.151 -8.229 -5.807 36.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.182 1.182 7 C -0.371 4.371 8 H 0.074 0.926 9 N -0.406 5.406 10 C 0.030 3.970 11 C -0.165 4.165 12 C 0.003 3.997 13 N -0.329 5.329 14 C -0.023 4.023 15 C -0.127 4.127 16 C -0.165 4.165 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.154 4.154 20 C 0.306 3.694 21 O -0.443 6.443 22 C -0.025 4.025 23 H 0.139 0.861 24 C -0.039 4.039 25 O -0.296 6.296 26 C -0.061 4.061 27 C -0.058 4.058 28 O -0.304 6.304 29 H 0.068 0.932 30 H 0.199 0.801 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.069 0.931 49 H 0.150 0.850 50 H 0.075 0.925 51 H 0.157 0.843 52 H 0.098 0.902 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 34.655 -8.461 -5.251 36.057 hybrid contribution -0.520 0.825 0.582 1.135 sum 34.135 -7.636 -4.670 35.289 Atomic orbital electron populations 1.69894 1.07166 1.26830 1.59538 1.25561 0.96201 1.01451 1.02415 0.85352 0.78373 0.79286 0.78424 1.19591 1.22137 1.18182 1.19065 0.82717 0.93618 1.41661 0.92582 1.42725 1.02584 1.04239 1.91060 1.20671 0.90416 0.87477 0.98400 1.21935 0.93773 0.98573 1.02244 1.21315 0.78188 0.96182 1.04004 1.47898 1.08628 1.70333 1.05995 1.22284 0.97995 0.97907 0.84117 1.22193 0.99321 0.95510 0.95685 1.22623 0.97384 0.98853 0.97644 1.22498 0.99211 0.98249 0.96145 1.22364 0.97162 0.98250 0.98247 1.22138 0.95875 1.02093 0.95257 1.20420 0.88339 0.76986 0.83635 1.90726 1.70005 1.50401 1.33194 1.22947 0.92136 0.98105 0.89362 0.86081 1.23152 0.84572 0.91437 1.04779 1.88111 1.24598 1.81100 1.35778 1.23535 1.01582 0.95387 0.85624 1.23618 0.81638 0.95188 1.05388 1.88226 1.27538 1.81451 1.33206 0.93210 0.80122 0.94299 0.96765 0.93657 0.89832 0.87336 0.91614 0.87912 0.88413 0.90740 0.91711 0.93524 0.91703 0.91297 0.91042 0.90971 0.91147 0.90108 0.93086 0.84993 0.92516 0.84323 0.90220 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.41 13.97 21.65 0.30 -64.10 16 2 C -0.06 -3.92 5.50 84.86 0.47 -3.46 16 3 Si 0.96 46.40 27.74 68.60 1.90 48.30 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.26 -11.43 6.52 99.48 0.65 -10.78 16 7 C -0.24 -14.19 10.47 84.03 0.88 -13.31 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 N -0.76 -36.95 5.41 -343.45 -1.86 -38.81 16 10 C 0.16 6.09 6.26 86.38 0.54 6.63 16 11 C -0.13 -3.73 5.65 30.60 0.17 -3.55 16 12 C 0.13 3.06 5.45 86.38 0.47 3.53 16 13 N -0.60 -12.34 2.32 -821.80 -1.91 -14.24 16 14 C 0.10 1.24 4.42 86.38 0.38 1.62 16 15 C -0.11 -1.27 3.12 -10.07 -0.03 -1.30 16 16 C -0.13 -1.74 5.73 31.70 0.18 -1.56 16 17 C -0.12 -1.32 6.91 31.91 0.22 -1.10 16 18 C -0.12 -1.02 6.83 31.66 0.22 -0.80 16 19 C -0.12 -0.99 6.46 31.32 0.20 -0.79 16 20 C 0.52 13.69 6.44 87.66 0.56 14.25 16 21 O -0.57 -21.09 16.14 15.36 0.25 -20.84 16 22 C 0.04 0.71 2.20 29.90 0.07 0.77 16 23 H 0.12 1.84 3.84 -2.39 -0.01 1.83 16 24 C 0.04 0.69 6.07 72.03 0.44 1.12 16 25 O -0.38 -6.36 10.85 -136.08 -1.48 -7.84 16 26 C 0.02 0.19 7.05 72.03 0.51 0.70 16 27 C 0.02 0.24 7.05 72.03 0.51 0.75 16 28 O -0.39 -9.05 10.10 -123.20 -1.24 -10.30 16 29 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 30 H 0.37 16.86 5.53 -92.70 -0.51 16.35 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.11 2.06 7.73 -2.39 -0.02 2.04 16 36 H 0.07 1.93 7.34 -2.38 -0.02 1.91 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.10 0.94 4.62 -2.39 -0.01 0.93 16 39 H 0.07 1.01 7.80 -2.39 -0.02 0.99 16 40 H 0.06 0.89 4.41 -2.39 -0.01 0.87 16 41 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.08 0.52 7.67 -2.39 -0.02 0.50 16 48 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 49 H 0.13 1.75 6.74 -2.39 -0.02 1.74 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 53 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -81.35 405.19 2.08 -79.27 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.32 Total: 25.05 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 5.79 Total: 3.51 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -3.46 Total: -117.15 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -2.47 Total: -38.98 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Total: -81.35 2.08 -79.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177225195.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.296 kcal (2) G-P(sol) polarization free energy of solvation -81.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds