Wall clock time and date at job start Sat Apr 11 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 120.00109 * 2 1 4 4 C 1.52996 * 109.47150 * 270.00346 * 3 2 1 5 5 H 1.09000 * 115.55264 * 330.71778 * 4 3 2 6 6 C 1.52999 * 117.50169 * 116.39015 * 4 3 2 7 7 C 1.52999 * 117.49855 * 185.01309 * 4 3 2 8 8 C 1.53005 * 117.49803 * 359.97438 * 7 4 3 9 9 C 1.53001 * 117.50103 * 145.01869 * 7 4 3 10 10 C 1.34780 * 120.00169 * 180.02562 * 2 1 3 11 11 O 1.21278 * 119.99792 * 179.97438 * 10 2 1 12 12 C 1.50704 * 119.99618 * 359.97438 * 10 2 1 13 13 H 1.09005 * 109.47122 * 60.00258 * 12 10 2 14 14 C 1.50694 * 109.47313 * 300.00114 * 12 10 2 15 15 H 1.08000 * 120.00563 * 120.00095 * 14 12 10 16 16 C 1.37885 * 119.99902 * 300.00258 * 14 12 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 N 1.46499 * 109.46760 * 180.02562 * 12 10 2 23 23 C 1.34775 * 119.99696 * 205.00024 * 22 12 10 24 24 O 1.21507 * 120.00083 * 0.02562 * 23 22 12 25 25 O 1.34641 * 120.00133 * 179.97438 * 23 22 12 26 26 C 1.45190 * 117.00282 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.47466 * 59.99935 * 26 25 23 28 28 C 1.53000 * 109.47255 * 179.97438 * 26 25 23 29 29 C 1.53002 * 109.47191 * 300.00208 * 26 25 23 30 30 H 1.09001 * 109.47101 * 269.99679 * 1 2 3 31 31 H 1.09007 * 109.47043 * 30.00134 * 1 2 3 32 32 H 1.08999 * 109.47109 * 149.99366 * 1 2 3 33 33 H 1.09004 * 109.46670 * 30.00133 * 3 2 1 34 34 H 1.08997 * 109.46903 * 150.00224 * 3 2 1 35 35 H 1.09002 * 117.50338 * 214.97508 * 6 4 3 36 36 H 1.09005 * 117.49521 * 359.97438 * 6 4 3 37 37 H 1.08999 * 109.46896 * 59.99849 * 8 7 4 38 38 H 1.08993 * 109.46876 * 180.02562 * 8 7 4 39 39 H 1.09005 * 109.46586 * 299.99931 * 8 7 4 40 40 H 1.08999 * 109.47208 * 60.00003 * 9 7 4 41 41 H 1.08994 * 109.47162 * 180.02562 * 9 7 4 42 42 H 1.09002 * 109.47005 * 300.00130 * 9 7 4 43 43 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 44 44 H 0.96997 * 119.99946 * 24.99702 * 22 12 10 45 45 H 1.09002 * 109.47141 * 59.99721 * 27 26 25 46 46 H 1.08996 * 109.47539 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.47360 * 300.00565 * 27 26 25 48 48 H 1.09008 * 109.46927 * 60.00611 * 28 26 25 49 49 H 1.09006 * 109.47395 * 179.97438 * 28 26 25 50 50 H 1.08998 * 109.47630 * 300.00305 * 28 26 25 51 51 H 1.09002 * 109.47160 * 59.99995 * 29 26 25 52 52 H 1.09004 * 109.46858 * 180.02562 * 29 26 25 53 53 H 1.08995 * 109.46825 * 299.99949 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.5430 0.9054 -2.1717 6 6 1.8018 3.0148 -1.9074 7 6 3.3102 2.9590 -1.6578 8 6 3.8469 3.6705 -0.4142 9 6 4.2299 2.9820 -2.8804 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1671 -0.0010 12 6 1.3853 -2.4723 -0.0005 13 1 0.7583 -2.5299 -0.8903 14 6 0.5194 -2.5524 1.2302 15 1 -0.5515 -2.6511 1.1315 16 6 1.0944 -2.4997 2.4823 17 7 2.3986 -2.3801 2.6025 18 14 0.0209 -2.5983 4.0078 19 1 -0.3914 -1.2302 4.4123 20 1 -1.1857 -3.4120 3.7124 21 1 0.7866 -3.2312 5.1117 22 7 2.3374 -3.5858 -0.0005 23 6 1.9712 -4.7854 -0.4938 24 8 0.8517 -4.9432 -0.9389 25 8 2.8463 -5.8087 -0.4943 26 6 2.3836 -7.0714 -1.0416 27 6 1.9790 -6.8759 -2.5041 28 6 3.5077 -8.1059 -0.9579 29 6 1.1767 -7.5630 -0.2400 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5139 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1384 0.5138 35 1 1.4645 3.0680 -2.9426 36 1 1.1917 3.5580 -1.1857 37 1 4.4745 2.9844 0.1545 38 1 4.4358 4.5363 -0.7168 39 1 3.0121 3.9979 0.2056 40 1 3.6322 2.8834 -3.7866 41 1 4.7765 3.9246 -2.9061 42 1 4.9364 2.1542 -2.8193 43 1 2.8030 -2.3427 3.4834 44 1 3.2312 -3.4597 0.3544 45 1 2.8388 -6.5256 -3.0752 46 1 1.6321 -7.8239 -2.9150 47 1 1.1784 -6.1387 -2.5642 48 1 3.7963 -8.2455 0.0839 49 1 3.1603 -9.0541 -1.3684 50 1 4.3673 -7.7555 -1.5293 51 1 0.3759 -6.8259 -0.3000 52 1 0.8297 -8.5113 -0.6506 53 1 1.4649 -7.7024 0.8019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180781969.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:32 Heat of formation + Delta-G solvation = -117.863915 kcal Electronic energy + Delta-G solvation = -31900.740304 eV Core-core repulsion = 27772.667082 eV Total energy + Delta-G solvation = -4128.073222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55436 -40.73013 -39.35996 -37.97582 -36.04581 -35.81481 -34.92305 -33.70852 -31.07818 -29.69715 -28.64014 -28.27981 -28.22364 -27.91025 -26.79097 -25.24550 -23.06555 -22.11321 -20.91535 -20.18878 -19.59458 -19.07539 -18.69696 -17.50855 -17.09990 -17.01349 -16.81345 -16.64436 -16.10604 -15.82591 -15.42757 -15.24401 -15.00982 -14.89317 -14.55370 -14.34343 -14.21186 -13.89067 -13.62896 -13.48903 -13.28573 -13.24199 -13.12545 -13.02204 -12.94107 -12.83108 -12.77353 -12.76284 -12.71802 -12.64734 -12.40958 -12.33137 -12.14222 -12.12468 -11.96765 -11.81783 -11.22240 -11.02125 -10.77533 -10.72453 -10.52950 -10.24198 -9.60312 -9.29972 -8.20157 -6.38256 1.35048 1.41415 1.49938 1.52815 2.12838 2.14394 2.38978 2.46015 2.87492 3.09557 3.68046 3.78763 3.87255 3.88710 3.89684 3.91715 4.04549 4.21237 4.24478 4.40874 4.51820 4.59700 4.63595 4.66802 4.67586 4.76449 4.81040 4.84253 4.86323 4.86616 4.91304 4.94046 4.95109 5.02492 5.05110 5.07698 5.10118 5.13899 5.20446 5.28363 5.31038 5.37943 5.42934 5.48209 5.61419 5.66447 5.81493 5.95977 5.99292 6.57238 6.74928 6.95283 7.33214 7.64119 7.78285 8.81412 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.003709 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.130046 B = 7548.265346 C = 9235.208571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.610 5.610 3 C 0.159 3.841 4 C -0.172 4.172 5 H 0.076 0.924 6 C -0.148 4.148 7 C -0.127 4.127 8 C -0.115 4.115 9 C -0.113 4.113 10 C 0.540 3.460 11 O -0.586 6.586 12 C 0.267 3.733 13 H 0.060 0.940 14 C -0.533 4.533 15 H 0.069 0.931 16 C 0.039 3.961 17 N -0.883 5.883 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.291 1.291 22 N -0.669 5.669 23 C 0.644 3.356 24 O -0.603 6.603 25 O -0.384 6.384 26 C 0.117 3.883 27 C -0.174 4.174 28 C -0.132 4.132 29 C -0.176 4.176 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.263 0.737 44 H 0.398 0.602 45 H 0.058 0.942 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.109 0.891 50 H 0.067 0.933 51 H 0.057 0.943 52 H 0.097 0.903 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 4.077 -7.890 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.343 5.343 3 C 0.036 3.964 4 C -0.191 4.191 5 H 0.094 0.906 6 C -0.185 4.185 7 C -0.127 4.127 8 C -0.172 4.172 9 C -0.170 4.170 10 C 0.330 3.670 11 O -0.466 6.466 12 C 0.163 3.837 13 H 0.078 0.922 14 C -0.571 4.571 15 H 0.087 0.913 16 C -0.165 4.165 17 N -0.519 5.519 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.217 1.217 22 N -0.325 5.325 23 C 0.397 3.603 24 O -0.496 6.496 25 O -0.300 6.300 26 C 0.081 3.919 27 C -0.231 4.231 28 C -0.189 4.189 29 C -0.233 4.233 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.232 0.768 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.127 0.873 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.116 0.884 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.376 3.972 -7.994 8.934 hybrid contribution 0.007 -0.307 1.327 1.362 sum -0.369 3.665 -6.667 7.617 Atomic orbital electron populations 1.21724 0.78054 1.02607 1.01819 1.47495 1.07915 1.04791 1.74084 1.20807 0.96347 0.84619 0.94610 1.22697 1.07255 0.91903 0.97289 0.90592 1.23391 0.94107 0.98124 1.02857 1.21726 0.93130 0.99462 0.98402 1.21350 1.01180 0.99589 0.95054 1.21352 0.98443 1.02115 0.95123 1.20952 0.86967 0.86493 0.72570 1.90481 1.16016 1.87935 1.52168 1.18294 0.86498 0.81126 0.97798 0.92198 1.21231 0.93401 1.52816 0.89693 0.91308 1.25690 0.95912 0.93204 1.01733 1.70070 1.10441 1.46884 1.24462 0.85647 0.78914 0.78684 0.79018 1.19121 1.19524 1.21689 1.45132 1.18173 1.07734 1.61507 1.18112 0.82636 0.81522 0.78065 1.90744 1.21226 1.83556 1.54029 1.86311 1.44218 1.20975 1.78452 1.22419 0.96145 0.79655 0.93685 1.22428 1.02319 1.04216 0.94179 1.21859 0.96644 0.97031 1.03327 1.22430 0.98238 1.02904 0.99731 0.93180 0.89490 0.91828 0.89098 0.93118 0.87985 0.87341 0.93757 0.90540 0.91638 0.92026 0.90470 0.93753 0.92745 0.76754 0.92322 0.88493 0.92304 0.91966 0.87270 0.91389 0.92400 0.88445 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.36 9.15 127.77 1.17 4.53 16 2 N -0.61 -24.41 2.87 -846.74 -2.43 -26.85 16 3 C 0.16 5.43 4.77 86.38 0.41 5.84 16 4 C -0.17 -5.06 5.73 -10.80 -0.06 -5.12 16 5 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 6 C -0.15 -3.14 9.47 30.59 0.29 -2.85 16 7 C -0.13 -3.00 2.70 -52.18 -0.14 -3.14 16 8 C -0.11 -2.48 8.86 71.98 0.64 -1.84 16 9 C -0.11 -2.42 9.85 71.98 0.71 -1.71 16 10 C 0.54 26.40 5.92 87.66 0.52 26.92 16 11 O -0.59 -31.97 15.37 -3.02 -0.05 -32.01 16 12 C 0.27 13.46 1.78 43.50 0.08 13.54 16 13 H 0.06 3.02 6.84 -2.38 -0.02 3.01 16 14 C -0.53 -27.38 6.70 25.60 0.17 -27.21 16 15 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 16 C 0.04 2.05 5.23 84.66 0.44 2.50 16 17 N -0.88 -48.79 11.58 21.45 0.25 -48.54 16 18 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 N -0.67 -34.57 4.36 -577.35 -2.52 -37.08 16 23 C 0.64 31.48 8.01 129.79 1.04 32.52 16 24 O -0.60 -30.29 11.54 19.82 0.23 -30.06 16 25 O -0.38 -16.54 9.94 -55.50 -0.55 -17.10 16 26 C 0.12 3.85 1.13 -10.79 -0.01 3.84 16 27 C -0.17 -5.26 8.37 71.98 0.60 -4.66 16 28 C -0.13 -3.15 8.85 71.98 0.64 -2.51 16 29 C -0.18 -5.72 8.37 71.98 0.60 -5.11 16 30 H 0.05 1.74 7.88 -2.39 -0.02 1.72 16 31 H 0.09 2.19 8.07 -2.38 -0.02 2.17 16 32 H 0.06 2.24 6.14 -2.39 -0.01 2.23 16 33 H 0.09 2.58 7.81 -2.39 -0.02 2.56 16 34 H 0.05 2.05 7.05 -2.39 -0.02 2.04 16 35 H 0.10 1.93 8.05 -2.39 -0.02 1.91 16 36 H 0.11 1.97 7.94 -2.38 -0.02 1.95 16 37 H 0.04 1.12 7.83 -2.39 -0.02 1.10 16 38 H 0.08 1.34 7.92 -2.39 -0.02 1.32 16 39 H 0.06 1.28 7.90 -2.38 -0.02 1.26 16 40 H 0.06 1.21 7.90 -2.39 -0.02 1.19 16 41 H 0.08 1.33 7.92 -2.39 -0.02 1.31 16 42 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.40 21.70 7.58 -92.71 -0.70 21.00 16 45 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.06 2.17 5.88 -2.39 -0.01 2.16 16 48 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 49 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 50 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.06 2.31 5.88 -2.39 -0.01 2.29 16 52 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 53 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -67.71 419.40 4.24 -63.48 By element: Atomic # 1 Polarization: 48.50 SS G_CDS: 0.18 Total: 48.69 kcal Atomic # 6 Polarization: 28.44 SS G_CDS: 7.10 Total: 35.54 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -4.70 Total: -112.47 kcal Atomic # 8 Polarization: -78.80 SS G_CDS: -0.37 Total: -79.17 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -67.71 4.24 -63.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180781969.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.389 kcal (2) G-P(sol) polarization free energy of solvation -67.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds