Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47268 * 2 1 4 4 C 1.50705 * 109.49513 * 66.16010 * 3 2 1 5 5 O 1.21295 * 119.99929 * 236.94514 * 4 3 2 6 6 N 1.34770 * 119.99751 * 56.95373 * 4 3 2 7 7 C 1.46496 * 120.00463 * 5.12928 * 6 4 3 8 8 C 1.37099 * 119.99820 * 185.13085 * 6 4 3 9 9 H 1.08002 * 120.00243 * 5.28833 * 8 6 4 10 10 C 1.38955 * 120.00037 * 185.28051 * 8 6 4 11 11 N 1.31407 * 119.99973 * 5.30810 * 10 8 6 12 12 Si 1.86796 * 119.99965 * 185.30680 * 10 8 6 13 13 H 1.48505 * 109.47428 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47156 * 120.00032 * 12 10 8 15 15 H 1.48498 * 109.47064 * 240.00378 * 12 10 8 16 16 C 1.53033 * 109.52528 * 186.24366 * 3 2 1 17 17 C 1.53038 * 109.53894 * 181.33114 * 16 3 2 18 18 C 1.53193 * 109.31378 * 298.63346 * 17 16 3 19 19 N 1.47211 * 108.85136 * 54.65475 * 18 17 16 20 20 C 1.34778 * 120.81512 * 126.33738 * 19 18 17 21 21 O 1.21507 * 119.99571 * 180.14135 * 20 19 18 22 22 O 1.34633 * 119.99874 * 0.14325 * 20 19 18 23 23 C 1.45197 * 117.00068 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.47416 * 59.99491 * 23 22 20 25 25 C 1.53000 * 109.47706 * 179.97438 * 23 22 20 26 26 C 1.53000 * 109.46804 * 299.99564 * 23 22 20 27 27 C 1.46924 * 118.55148 * 306.47253 * 19 18 17 28 28 H 1.09008 * 109.47013 * 305.06455 * 1 2 3 29 29 H 1.08999 * 109.46981 * 65.05858 * 1 2 3 30 30 H 1.08990 * 109.47115 * 185.06339 * 1 2 3 31 31 H 1.09000 * 109.47132 * 239.99900 * 2 1 3 32 32 H 1.08996 * 109.46777 * 119.99991 * 2 1 3 33 33 H 1.09002 * 109.46839 * 355.36921 * 7 6 4 34 34 H 1.08997 * 109.47380 * 115.37130 * 7 6 4 35 35 H 1.09007 * 109.47448 * 235.37716 * 7 6 4 36 36 H 0.97001 * 120.00129 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.46044 * 301.35583 * 16 3 2 38 38 H 1.09002 * 109.46158 * 61.32281 * 16 3 2 39 39 H 1.08996 * 109.49679 * 58.58559 * 17 16 3 40 40 H 1.09001 * 109.49661 * 178.65047 * 17 16 3 41 41 H 1.09006 * 109.58574 * 174.41817 * 18 17 16 42 42 H 1.08994 * 109.58815 * 294.70539 * 18 17 16 43 43 H 1.08997 * 109.47498 * 60.00215 * 24 23 22 44 44 H 1.08997 * 109.47635 * 180.02562 * 24 23 22 45 45 H 1.09007 * 109.46954 * 300.00473 * 24 23 22 46 46 H 1.08998 * 109.46999 * 59.99280 * 25 23 22 47 47 H 1.08992 * 109.47643 * 180.02562 * 25 23 22 48 48 H 1.08999 * 109.46701 * 300.00213 * 25 23 22 49 49 H 1.09000 * 109.47439 * 59.99865 * 26 23 22 50 50 H 1.09003 * 109.47260 * 179.97438 * 26 23 22 51 51 H 1.08998 * 109.47523 * 299.99703 * 26 23 22 52 52 H 1.09003 * 109.58800 * 293.68540 * 27 19 18 53 53 H 1.09004 * 109.58602 * 173.40222 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6664 2.1081 1.2994 5 8 1.0097 3.1279 1.2916 6 7 2.0621 1.5703 2.4701 7 6 2.9484 0.4039 2.4781 8 6 1.6351 2.1148 3.6537 9 1 0.9151 2.9198 3.6491 10 6 2.1285 1.6309 4.8592 11 7 3.0801 0.7247 4.8632 12 14 1.4392 2.2686 6.4739 13 1 0.3836 3.2761 6.1981 14 1 0.8566 1.1401 7.2435 15 1 2.5288 2.8962 7.2638 16 6 3.5624 1.4468 -0.1569 17 6 4.0763 2.8879 -0.1236 18 6 3.4677 3.6699 -1.2919 19 7 2.0017 3.5507 -1.2317 20 6 1.2191 4.6481 -1.2331 21 8 0.0107 4.5325 -1.1804 22 8 1.7764 5.8722 -1.2930 23 6 0.8728 7.0087 -1.2902 24 6 0.0428 6.9972 -0.0049 25 6 1.6828 8.3047 -1.3620 26 6 -0.0596 6.9219 -2.5001 27 6 1.4084 2.2082 -1.1668 28 1 -0.3633 0.5904 0.8412 29 1 -0.3633 0.4334 -0.9318 30 1 -0.3633 -1.0236 0.0907 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.1127 0.0655 1.4551 34 1 3.9029 0.6759 2.9286 35 1 2.4889 -0.3977 3.0565 36 1 3.4248 0.3872 5.7047 37 1 4.0131 0.8815 0.6589 38 1 3.8307 0.9876 -1.1083 39 1 3.7869 3.3557 0.8174 40 1 5.1628 2.8888 -0.2113 41 1 3.7514 4.7197 -1.2161 42 1 3.8309 3.2604 -2.2344 43 1 0.7070 7.0591 0.8571 44 1 -0.6358 7.8501 -0.0029 45 1 -0.5343 6.0739 0.0467 46 1 2.2744 8.3131 -2.2774 47 1 1.0045 9.1578 -1.3594 48 1 2.3469 8.3663 -0.4998 49 1 -0.6368 5.9987 -2.4486 50 1 -0.7383 7.7748 -2.4978 51 1 0.5316 6.9301 -3.4158 52 1 1.6017 1.6778 -2.0993 53 1 0.3329 2.2912 -1.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180878874.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -104.981172 kcal Electronic energy + Delta-G solvation = -33843.054735 eV Core-core repulsion = 29715.540151 eV Total energy + Delta-G solvation = -4127.514584 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.15653 -41.20938 -38.75679 -37.44170 -36.63849 -35.84242 -34.74041 -33.53839 -32.95041 -30.28541 -28.58611 -28.37105 -28.28326 -26.65732 -26.53210 -25.25698 -23.16898 -22.69828 -22.21619 -20.37414 -19.71772 -18.89472 -18.84395 -17.65315 -17.22065 -17.00125 -16.58204 -16.34997 -16.16367 -15.92762 -15.41039 -15.32972 -15.16916 -14.92493 -14.54370 -14.33752 -14.26850 -14.17113 -13.72686 -13.69059 -13.37383 -13.29031 -13.21550 -13.05746 -12.88535 -12.83632 -12.82908 -12.79397 -12.57220 -12.44729 -12.35942 -12.21532 -12.17867 -12.11885 -11.87410 -11.77232 -11.32084 -11.28393 -11.02797 -10.97654 -10.84915 -10.03346 -9.74500 -9.51323 -8.17996 -5.84345 1.27084 1.30096 1.33957 1.47029 2.04334 2.20431 2.24641 2.96121 3.14565 3.17587 3.69342 3.77677 3.78334 3.81710 3.91261 3.96255 4.06845 4.18179 4.25935 4.35697 4.44660 4.51448 4.58866 4.61107 4.65022 4.66377 4.74034 4.74280 4.75927 4.82229 4.87763 4.88649 4.92076 4.95159 5.06333 5.09473 5.11789 5.14001 5.28959 5.30055 5.34658 5.38306 5.38890 5.42369 5.46294 5.58464 5.62492 5.67246 6.11052 6.51676 6.57126 7.26441 7.50676 7.63896 8.20691 8.70728 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.004566 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.549027 B = 6130.445288 C = 7285.407425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.080 4.080 4 C 0.458 3.542 5 O -0.624 6.624 6 N -0.467 5.467 7 C 0.112 3.888 8 C -0.329 4.329 9 H 0.061 0.939 10 C -0.004 4.004 11 N -0.897 5.897 12 Si 0.980 3.020 13 H -0.285 1.285 14 H -0.267 1.267 15 H -0.271 1.271 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.115 3.885 19 N -0.587 5.587 20 C 0.656 3.344 21 O -0.594 6.594 22 O -0.373 6.373 23 C 0.124 3.876 24 C -0.176 4.176 25 C -0.131 4.131 26 C -0.172 4.172 27 C 0.158 3.842 28 H 0.009 0.991 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.016 0.984 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.038 0.962 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.091 0.909 51 H 0.071 0.929 52 H 0.111 0.889 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 2.920 -16.510 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.085 4.085 4 C 0.247 3.753 5 O -0.510 6.510 6 N -0.186 5.186 7 C -0.030 4.030 8 C -0.458 4.458 9 H 0.079 0.921 10 C -0.204 4.204 11 N -0.539 5.539 12 Si 0.805 3.195 13 H -0.210 1.210 14 H -0.192 1.192 15 H -0.196 1.196 16 C -0.156 4.156 17 C -0.171 4.171 18 C -0.007 4.007 19 N -0.326 5.326 20 C 0.411 3.589 21 O -0.485 6.485 22 O -0.288 6.288 23 C 0.088 3.912 24 C -0.233 4.233 25 C -0.188 4.188 26 C -0.229 4.229 27 C 0.037 3.963 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.035 0.965 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.128 0.872 43 H 0.058 0.942 44 H 0.112 0.888 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.110 0.890 51 H 0.090 0.910 52 H 0.129 0.871 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.716 3.361 -16.320 17.072 hybrid contribution -0.777 0.423 1.989 2.177 sum 2.939 3.784 -14.331 15.111 Atomic orbital electron populations 1.21758 0.96472 1.01725 1.00613 1.21975 0.95879 0.93003 1.05145 1.21174 0.98495 0.96798 0.91984 1.20627 0.83281 0.85800 0.85547 1.90552 1.45278 1.27596 1.87592 1.43764 1.43103 1.27446 1.04317 1.22218 0.93946 0.87322 0.99516 1.19575 1.23545 1.18049 0.84626 0.92133 1.25828 0.96280 0.96840 1.01453 1.70239 1.26495 1.29805 1.27327 0.85074 0.78042 0.78137 0.78269 1.21035 1.19221 1.19638 1.22022 0.91227 0.97105 1.05269 1.21894 1.01894 0.96118 0.97224 1.21920 0.77450 1.01687 0.99618 1.46865 1.07196 1.03589 1.74919 1.17983 0.84018 0.81394 0.75477 1.90805 1.14465 1.86491 1.56719 1.86231 1.41777 1.13943 1.86845 1.22357 0.89507 0.83488 0.95860 1.22409 1.00649 1.03555 0.96702 1.21848 1.00634 0.92759 1.03516 1.22408 0.99922 1.04067 0.96530 1.21468 0.98054 0.79576 0.97243 0.97180 0.91802 0.90710 0.86592 0.90293 0.88809 0.93099 0.94471 0.92182 0.89972 0.86441 0.96504 0.87488 0.90207 0.87204 0.94245 0.88824 0.93223 0.90173 0.87760 0.92286 0.92523 0.89014 0.91020 0.87084 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 9.13 71.98 0.66 -4.01 16 2 C -0.12 -3.46 4.62 30.60 0.14 -3.32 16 3 C -0.08 -2.72 0.28 -52.85 -0.02 -2.74 16 4 C 0.46 22.39 3.92 87.66 0.34 22.73 16 5 O -0.62 -36.67 14.07 -3.08 -0.04 -36.71 16 6 N -0.47 -24.43 3.02 -658.88 -1.99 -26.42 16 7 C 0.11 4.96 6.21 127.77 0.79 5.76 16 8 C -0.33 -19.63 9.55 84.04 0.80 -18.83 16 9 H 0.06 3.99 7.20 -2.91 -0.02 3.97 16 10 C 0.00 -0.22 5.42 84.93 0.46 0.24 16 11 N -0.90 -47.90 9.53 21.66 0.21 -47.70 16 12 Si 0.98 45.05 29.56 68.60 2.03 47.08 16 13 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 16 C -0.12 -3.19 4.39 30.62 0.13 -3.06 16 17 C -0.13 -3.88 5.84 30.67 0.18 -3.71 16 18 C 0.11 3.10 6.46 86.31 0.56 3.65 16 19 N -0.59 -20.61 2.32 -948.51 -2.20 -22.81 16 20 C 0.66 26.61 6.78 129.79 0.88 27.50 16 21 O -0.59 -27.50 11.23 19.82 0.22 -27.28 16 22 O -0.37 -13.35 8.55 -55.43 -0.47 -13.83 16 23 C 0.12 3.70 1.13 -10.79 -0.01 3.68 16 24 C -0.18 -6.08 8.37 71.98 0.60 -5.48 16 25 C -0.13 -2.70 8.85 71.98 0.64 -2.06 16 26 C -0.17 -4.50 8.37 71.98 0.60 -3.90 16 27 C 0.16 5.25 3.96 86.36 0.34 5.60 16 28 H 0.01 0.38 7.27 -2.38 -0.02 0.36 16 29 H 0.06 1.83 6.77 -2.39 -0.02 1.82 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.44 4.70 -2.39 -0.01 2.43 16 33 H 0.09 3.24 2.43 -2.39 -0.01 3.24 16 34 H 0.05 2.44 6.86 -2.39 -0.02 2.42 16 35 H 0.04 1.77 7.26 -2.38 -0.02 1.75 16 36 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 37 H 0.08 2.35 4.81 -2.39 -0.01 2.33 16 38 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.02 0.67 7.13 -2.39 -0.02 0.65 16 40 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.08 2.22 6.95 -2.38 -0.02 2.21 16 42 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.05 2.16 5.88 -2.38 -0.01 2.15 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.06 1.88 5.88 -2.39 -0.01 1.86 16 50 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 53 H 0.06 2.67 5.51 -2.39 -0.01 2.66 16 Total: -1.00 -81.31 385.70 5.77 -75.54 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.91 Total: 30.06 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 7.11 Total: 22.07 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -3.98 Total: -96.93 kcal Atomic # 8 Polarization: -77.52 SS G_CDS: -0.29 Total: -77.81 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -81.31 5.77 -75.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180878874.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.438 kcal (2) G-P(sol) polarization free energy of solvation -81.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds