Wall clock time and date at job start Sat Apr 11 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99780 * 2 1 4 4 H 1.48507 * 109.47070 * 240.00194 * 3 2 1 5 5 H 1.48502 * 109.47535 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47008 * 120.00493 * 3 2 1 7 7 C 1.38815 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00201 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99642 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46767 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46626 * 305.00524 * 11 10 9 13 13 C 1.54805 * 109.46840 * 185.01175 * 11 10 9 14 14 N 1.45121 * 109.53506 * 172.11690 * 13 11 10 15 15 C 1.34785 * 118.75251 * 269.26740 * 14 13 11 16 16 O 1.21274 * 120.00392 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99350 * 180.02562 * 15 14 13 18 18 O 1.42905 * 109.47140 * 179.97438 * 17 15 14 19 19 C 1.42900 * 114.00388 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.46851 * 180.02562 * 19 18 17 21 21 C 1.54267 * 110.03317 * 292.90655 * 20 19 18 22 22 C 1.54965 * 104.16100 * 217.13714 * 21 20 19 23 23 C 1.54893 * 102.77617 * 37.89321 * 22 21 20 24 24 C 1.53879 * 110.02631 * 175.69364 * 20 19 18 25 25 C 1.47502 * 122.48584 * 89.29182 * 14 13 11 26 26 C 1.53575 * 111.02725 * 318.36709 * 25 14 13 27 27 C 1.51532 * 109.57901 * 320.02191 * 26 25 14 28 28 O 1.38015 * 109.46708 * 65.00551 * 11 10 9 29 29 H 0.97001 * 120.00030 * 359.97438 * 1 2 3 30 30 H 0.96992 * 119.99955 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47218 * 60.00245 * 10 9 7 32 32 H 1.08996 * 109.47215 * 299.99856 * 10 9 7 33 33 H 1.09003 * 109.45912 * 52.09165 * 13 11 10 34 34 H 1.09007 * 109.44780 * 292.12977 * 13 11 10 35 35 H 1.09005 * 109.47421 * 299.99785 * 17 15 14 36 36 H 1.09007 * 109.47480 * 60.00121 * 17 15 14 37 37 H 1.08994 * 109.47201 * 300.00312 * 19 18 17 38 38 H 1.09001 * 109.46713 * 60.00114 * 19 18 17 39 39 H 1.08996 * 110.01997 * 54.30548 * 20 19 18 40 40 H 1.08995 * 110.48626 * 335.78619 * 21 20 19 41 41 H 1.09002 * 110.48469 * 98.42763 * 21 20 19 42 42 H 1.08994 * 110.72484 * 279.57797 * 22 21 20 43 43 H 1.09002 * 110.92085 * 156.29410 * 22 21 20 44 44 H 1.08998 * 110.48619 * 203.40349 * 23 22 21 45 45 H 1.09000 * 110.48663 * 80.75617 * 23 22 21 46 46 H 1.09001 * 110.02728 * 238.56766 * 24 20 19 47 47 H 1.08998 * 110.03424 * 359.97438 * 24 20 19 48 48 H 1.09004 * 109.16572 * 197.97123 * 25 14 13 49 49 H 1.08993 * 109.16924 * 78.76899 * 25 14 13 50 50 H 1.09003 * 109.45246 * 199.98725 * 26 25 14 51 51 H 1.09000 * 109.45053 * 80.05588 * 26 25 14 52 52 H 1.08997 * 109.59067 * 331.61691 * 27 26 25 53 53 H 1.08996 * 109.58948 * 211.17839 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3801 -4.7125 0.8421 13 6 1.8338 -6.1567 0.1276 14 7 0.8908 -7.2436 0.3156 15 6 0.5439 -7.5912 1.5708 16 8 1.0176 -6.9986 2.5170 17 6 -0.4325 -8.7162 1.7983 18 8 -0.6372 -8.8928 3.2016 19 6 -1.5520 -9.9409 3.5283 20 6 -1.6939 -10.0385 5.0485 21 6 -0.3670 -10.5168 5.6735 22 6 -0.8073 -11.4417 6.8363 23 6 -2.0388 -12.1722 6.2454 24 6 -2.7566 -11.0904 5.4121 25 6 0.2982 -7.9827 -0.8150 26 6 -0.0935 -7.0282 -1.9525 27 6 -0.6922 -5.7636 -1.3708 28 8 0.3466 -4.8123 -1.1790 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6848 -3.7145 0.8895 32 1 2.6848 -3.7145 -0.8905 33 1 2.5071 -6.1078 0.9834 34 1 2.4121 -6.3304 -0.7799 35 1 -1.3819 -8.4758 1.3198 36 1 -0.0330 -9.6362 1.3712 37 1 -2.5245 -9.7253 3.0860 38 1 -1.1763 -10.8862 3.1366 39 1 -1.9724 -9.0686 5.4603 40 1 0.2192 -11.0748 4.9435 41 1 0.2028 -9.6691 6.0541 42 1 -1.0891 -10.8548 7.7104 43 1 -0.0203 -12.1528 7.0874 44 1 -2.6880 -12.5322 7.0435 45 1 -1.7229 -12.9978 5.6076 46 1 -3.5503 -10.6309 6.0012 47 1 -3.1715 -11.5309 4.5056 48 1 -0.5901 -8.5120 -0.4701 49 1 1.0225 -8.7065 -1.1885 50 1 -0.8261 -7.5134 -2.5975 51 1 0.7922 -6.7758 -2.5356 52 1 -1.1629 -5.9887 -0.4139 53 1 -1.4343 -5.3602 -2.0597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200713970.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:54 Heat of formation + Delta-G solvation = -140.422584 kcal Electronic energy + Delta-G solvation = -30471.266997 eV Core-core repulsion = 26342.215558 eV Total energy + Delta-G solvation = -4129.051439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71593 -40.05181 -39.43725 -37.81028 -36.94412 -36.26674 -34.34769 -32.68384 -31.76005 -30.65681 -29.58251 -28.97074 -27.41334 -26.48707 -25.20720 -24.34524 -22.86842 -22.32758 -21.55814 -20.75468 -20.10349 -19.28160 -18.63749 -18.06512 -17.69176 -17.51363 -17.14710 -16.74638 -16.65596 -16.25748 -16.03405 -15.74301 -15.56699 -15.16271 -14.87936 -14.79757 -14.61339 -14.31195 -14.21248 -13.90864 -13.64521 -13.43234 -13.33126 -13.12025 -12.84726 -12.73860 -12.62185 -12.31413 -12.18054 -12.16099 -12.02318 -11.98159 -11.91693 -11.83905 -11.71051 -11.51124 -11.48401 -11.33442 -10.98414 -10.83940 -10.65693 -10.57333 -9.69896 -9.03411 -7.95332 -5.25586 1.44487 1.45947 1.50455 1.56258 1.65086 2.55098 2.69959 2.76943 3.37664 3.44134 3.61129 3.68921 3.72338 3.83566 3.88525 3.95166 4.05276 4.07600 4.11661 4.19385 4.29291 4.34163 4.36907 4.39634 4.44772 4.49386 4.52277 4.56081 4.67312 4.67637 4.71713 4.74706 4.83752 4.85124 4.87053 4.91191 5.05904 5.07192 5.08670 5.12475 5.19634 5.24227 5.34148 5.44643 5.45495 5.46926 5.48675 6.04246 6.24882 6.28845 6.73140 7.07203 7.30817 8.04654 8.30183 9.28453 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.002148 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.744086 B =13031.530237 C =14191.129989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.982 3.018 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.162 3.838 11 C 0.106 3.894 12 H 0.015 0.985 13 C 0.096 3.904 14 N -0.606 5.606 15 C 0.496 3.504 16 O -0.573 6.573 17 C 0.051 3.949 18 O -0.399 6.399 19 C 0.065 3.935 20 C -0.097 4.097 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.113 4.113 25 C 0.097 3.903 26 C -0.156 4.156 27 C 0.062 3.938 28 O -0.397 6.397 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.112 0.888 49 H 0.100 0.900 50 H 0.124 0.876 51 H 0.076 0.924 52 H 0.040 0.960 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.050 -33.197 1.803 33.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.035 3.965 11 C 0.045 3.955 12 H 0.033 0.967 13 C -0.029 4.029 14 N -0.340 5.340 15 C 0.285 3.715 16 O -0.452 6.452 17 C -0.028 4.028 18 O -0.319 6.319 19 C -0.010 4.010 20 C -0.115 4.115 21 C -0.154 4.154 22 C -0.165 4.165 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.023 4.023 26 C -0.194 4.194 27 C -0.014 4.014 28 O -0.316 6.316 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.130 0.870 49 H 0.118 0.882 50 H 0.142 0.858 51 H 0.095 0.905 52 H 0.058 0.942 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.516 -32.584 2.282 33.126 hybrid contribution -0.076 1.309 0.276 1.340 sum -5.592 -31.275 2.558 31.874 Atomic orbital electron populations 1.69852 1.06813 1.26196 1.59339 1.25693 0.96527 1.01454 1.03508 0.85096 0.77113 0.78518 0.78308 1.19978 1.21941 1.20358 1.19662 0.91615 0.85246 1.41609 0.90360 1.42424 1.05554 1.00968 1.89351 1.20759 0.93183 0.84092 0.98470 1.21857 0.92736 0.94694 0.86186 0.96676 1.22098 0.91902 0.85204 1.03684 1.48013 1.44927 1.34583 1.06471 1.21238 0.82551 0.85058 0.82658 1.90737 1.55648 1.55778 1.42993 1.22393 0.98710 0.97255 0.84483 1.88015 1.65841 1.56182 1.21833 1.22920 0.92471 0.89817 0.95839 1.21808 0.96451 0.99595 0.93684 1.22358 0.96471 0.98651 0.97923 1.22556 0.98343 0.98250 0.97396 1.22366 0.96469 0.97607 0.99408 1.22121 0.96822 0.95302 1.00819 1.22434 1.00185 0.94002 0.85661 1.22441 1.03453 0.95214 0.98285 1.22441 0.89248 0.89664 1.00052 1.86357 1.49347 1.58074 1.37804 0.93971 0.79598 0.94924 0.94648 0.90554 0.87411 0.87718 0.86603 0.91649 0.90999 0.92271 0.91500 0.93779 0.91938 0.90965 0.90701 0.90722 0.91215 0.90019 0.87024 0.88212 0.85751 0.90548 0.94150 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.20 13.06 21.65 0.28 -62.92 16 2 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 3 Si 0.98 48.53 29.55 68.60 2.03 50.56 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.25 -15.07 9.99 84.03 0.84 -14.23 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.74 -42.12 5.54 -343.44 -1.90 -44.02 16 10 C 0.16 7.36 5.92 86.38 0.51 7.87 16 11 C 0.11 4.04 2.68 31.21 0.08 4.12 16 12 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 13 C 0.10 2.80 4.86 87.25 0.42 3.23 16 14 N -0.61 -14.05 2.19 -817.97 -1.79 -15.84 16 15 C 0.50 13.77 7.71 87.65 0.68 14.44 16 16 O -0.57 -23.02 15.93 16.02 0.26 -22.76 16 17 C 0.05 0.89 4.76 71.23 0.34 1.23 16 18 O -0.40 -9.49 9.71 -129.94 -1.26 -10.75 16 19 C 0.07 0.98 4.98 71.98 0.36 1.34 16 20 C -0.10 -1.58 3.19 -10.07 -0.03 -1.61 16 21 C -0.12 -2.04 6.22 31.70 0.20 -1.85 16 22 C -0.13 -1.70 6.91 31.91 0.22 -1.47 16 23 C -0.12 -1.20 6.83 31.67 0.22 -0.98 16 24 C -0.11 -1.22 6.46 31.32 0.20 -1.02 16 25 C 0.10 1.18 6.00 86.38 0.52 1.70 16 26 C -0.16 -2.26 5.78 30.31 0.18 -2.09 16 27 C 0.06 1.54 6.37 71.50 0.46 1.99 16 28 O -0.40 -14.44 9.38 -117.87 -1.11 -15.54 16 29 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.37 22.82 7.65 -92.71 -0.71 22.11 16 31 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 2.52 7.27 -2.39 -0.02 2.51 16 34 H 0.11 2.64 8.11 -2.38 -0.02 2.62 16 35 H 0.11 1.25 7.41 -2.38 -0.02 1.24 16 36 H 0.12 1.11 8.04 -2.38 -0.02 1.09 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.75 8.02 -2.39 -0.02 0.73 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.13 7.77 -2.39 -0.02 1.11 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 0.63 7.67 -2.39 -0.02 0.61 16 48 H 0.11 0.67 5.88 -2.38 -0.01 0.65 16 49 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.08 1.29 8.01 -2.39 -0.02 1.27 16 52 H 0.04 1.04 7.40 -2.39 -0.02 1.02 16 53 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -85.46 414.21 2.32 -83.14 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.17 Total: 29.91 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.65 Total: 8.24 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -3.41 Total: -122.78 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -2.11 Total: -49.06 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -85.46 2.32 -83.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200713970.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.283 kcal (2) G-P(sol) polarization free energy of solvation -85.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds