Wall clock time and date at job start Sat Apr 11 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00417 * 2 1 4 4 H 1.48496 * 109.47397 * 240.00182 * 3 2 1 5 5 H 1.48503 * 109.47009 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47068 * 120.00057 * 3 2 1 7 7 C 1.38817 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99553 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00382 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47497 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.46865 * 59.99712 * 11 10 9 13 13 C 1.55328 * 109.40558 * 180.02562 * 11 10 9 14 14 N 1.45118 * 109.25603 * 187.88239 * 13 11 10 15 15 C 1.34784 * 118.75424 * 90.85710 * 14 13 11 16 16 O 1.21276 * 120.00051 * 359.73008 * 15 14 13 17 17 C 1.50699 * 119.99728 * 179.72829 * 15 14 13 18 18 O 1.42899 * 109.46785 * 179.97438 * 17 15 14 19 19 C 1.42905 * 113.99778 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47307 * 269.99994 * 19 18 17 21 21 C 1.52996 * 109.47089 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.46880 * 60.00486 * 21 20 19 23 23 C 1.52998 * 109.46862 * 299.99653 * 22 21 20 24 24 C 1.52997 * 109.47463 * 60.00479 * 23 22 21 25 25 C 1.47504 * 122.48809 * 270.57101 * 14 13 11 26 26 C 1.53578 * 111.02460 * 41.89161 * 25 14 13 27 27 C 1.51531 * 109.58555 * 39.97241 * 26 25 14 28 28 O 1.38016 * 109.47058 * 299.99964 * 11 10 9 29 29 H 0.96995 * 119.99286 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99834 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.46902 * 59.99584 * 10 9 7 32 32 H 1.08999 * 109.47116 * 299.99740 * 10 9 7 33 33 H 1.09006 * 109.50268 * 68.00633 * 13 11 10 34 34 H 1.09001 * 109.69426 * 307.87863 * 13 11 10 35 35 H 1.08997 * 109.47198 * 59.99898 * 17 15 14 36 36 H 1.08997 * 109.47040 * 299.99932 * 17 15 14 37 37 H 1.09001 * 109.46882 * 30.00382 * 19 18 17 38 38 H 1.09004 * 109.47223 * 300.00490 * 20 19 18 39 39 H 1.08997 * 109.46785 * 60.00007 * 20 19 18 40 40 H 1.09001 * 109.47087 * 300.00379 * 21 20 19 41 41 H 1.09001 * 109.47185 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.46925 * 179.97438 * 22 21 20 43 43 H 1.08996 * 109.47699 * 59.99728 * 22 21 20 44 44 H 1.08996 * 109.47373 * 299.99597 * 23 22 21 45 45 H 1.09010 * 109.47071 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47559 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.46903 * 59.99504 * 24 23 22 48 48 H 1.09002 * 109.16753 * 162.28203 * 25 14 13 49 49 H 1.08994 * 109.17037 * 281.49396 * 25 14 13 50 50 H 1.09005 * 109.45459 * 160.01235 * 26 25 14 51 51 H 1.09002 * 109.45086 * 279.96421 * 26 25 14 52 52 H 1.09003 * 109.58911 * 28.38841 * 27 26 25 53 53 H 1.09006 * 109.58948 * 148.81976 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 6 1.0637 -4.8197 -0.0031 12 1 0.4367 -4.7613 -0.8928 13 6 1.8418 -6.1640 -0.0037 14 7 0.9071 -7.2580 -0.1919 15 6 0.6430 -7.6767 -1.4456 16 8 1.1792 -7.1378 -2.3905 17 6 -0.3185 -8.8146 -1.6730 18 8 -0.4314 -9.0698 -3.0745 19 6 -1.3239 -10.1371 -3.4008 20 6 -0.5503 -11.4567 -3.4343 21 6 -1.5060 -12.5994 -3.7831 22 6 -2.1317 -12.3401 -5.1550 23 6 -2.9053 -11.0206 -5.1215 24 6 -1.9497 -9.8778 -4.7728 25 6 0.2398 -7.9331 0.9371 26 6 -0.2241 -6.9165 1.9906 27 6 -0.7807 -5.6878 1.3003 28 8 0.2707 -4.7473 1.1241 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0016 31 1 2.6847 -3.7154 0.8872 32 1 2.6845 -3.7139 -0.8928 33 1 2.3572 -6.2866 0.9490 34 1 2.5712 -6.1660 -0.8137 35 1 -1.2968 -8.5492 -1.2724 36 1 0.0502 -9.7080 -1.1691 37 1 -2.1104 -10.1960 -2.6484 38 1 0.2362 -11.3978 -4.1867 39 1 -0.1049 -11.6416 -2.4569 40 1 -2.2922 -12.6581 -3.0304 41 1 -0.9550 -13.5396 -3.8066 42 1 -2.8122 -13.1545 -5.4037 43 1 -1.3456 -12.2814 -5.9078 44 1 -3.6915 -11.0793 -4.3689 45 1 -3.3515 -10.8360 -6.0989 46 1 -2.5007 -8.9376 -4.7493 47 1 -1.1635 -9.8191 -5.5255 48 1 -0.6249 -8.4826 0.5650 49 1 0.9366 -8.6332 1.3979 50 1 -0.9987 -7.3658 2.6123 51 1 0.6217 -6.6296 2.6154 52 1 -1.1878 -5.9674 0.3286 53 1 -1.5659 -5.2474 1.9149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200879905.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:56 Heat of formation + Delta-G solvation = -144.042122 kcal Electronic energy + Delta-G solvation = -30799.936454 eV Core-core repulsion = 26670.728060 eV Total energy + Delta-G solvation = -4129.208394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72354 -40.27633 -39.50503 -37.28035 -36.93943 -36.25277 -34.33128 -32.67373 -31.75218 -31.40899 -30.40443 -28.90409 -27.37188 -26.44909 -24.43902 -23.52915 -23.12832 -22.85101 -22.30627 -20.89192 -20.15458 -19.27241 -18.63089 -18.08614 -17.65029 -17.31255 -17.19123 -16.66553 -16.47850 -16.29309 -15.71774 -15.52600 -15.15808 -15.13366 -14.96024 -14.80811 -14.60086 -14.56441 -13.97168 -13.90835 -13.73347 -13.51104 -13.37642 -13.15776 -13.11672 -13.05112 -12.73833 -12.63649 -12.32417 -12.17775 -12.07456 -12.02643 -11.98866 -11.83690 -11.50661 -11.49063 -11.48662 -11.24870 -10.97788 -10.83113 -10.56936 -10.43605 -9.69644 -9.02465 -7.94727 -5.24757 1.44208 1.45905 1.50655 1.56462 1.64020 2.55458 2.69956 2.74971 3.38089 3.42488 3.60674 3.76839 3.79584 3.83506 3.94363 4.04317 4.06053 4.07297 4.10540 4.16892 4.26078 4.28431 4.31296 4.34979 4.38128 4.44666 4.51382 4.55458 4.57314 4.66703 4.67384 4.71884 4.84271 4.87024 4.94476 5.02788 5.07614 5.11633 5.12850 5.19758 5.22296 5.23429 5.30451 5.38520 5.45445 5.46871 5.51281 6.07221 6.25579 6.30032 6.73977 7.06477 7.31687 8.05884 8.31592 9.29049 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.002171 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.200733 B =12892.499771 C =13688.879168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.981 3.019 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.162 3.838 11 C 0.106 3.894 12 H 0.016 0.984 13 C 0.096 3.904 14 N -0.606 5.606 15 C 0.497 3.503 16 O -0.573 6.573 17 C 0.051 3.949 18 O -0.395 6.395 19 C 0.085 3.915 20 C -0.140 4.140 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.121 4.121 25 C 0.097 3.903 26 C -0.156 4.156 27 C 0.062 3.938 28 O -0.396 6.396 29 H 0.252 0.748 30 H 0.374 0.626 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.111 0.889 49 H 0.099 0.901 50 H 0.124 0.876 51 H 0.075 0.925 52 H 0.041 0.959 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 -33.278 -0.028 33.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.381 4.381 8 H 0.096 0.904 9 N -0.382 5.382 10 C 0.035 3.965 11 C 0.045 3.955 12 H 0.034 0.966 13 C -0.029 4.029 14 N -0.340 5.340 15 C 0.286 3.714 16 O -0.451 6.451 17 C -0.028 4.028 18 O -0.314 6.314 19 C 0.028 3.972 20 C -0.177 4.177 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.149 4.149 24 C -0.158 4.158 25 C -0.023 4.023 26 C -0.194 4.194 27 C -0.014 4.014 28 O -0.315 6.315 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.129 0.871 49 H 0.118 0.882 50 H 0.142 0.858 51 H 0.094 0.906 52 H 0.059 0.941 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.315 -32.693 -0.515 33.302 hybrid contribution 0.047 1.219 -0.366 1.274 sum -6.268 -31.474 -0.881 32.104 Atomic orbital electron populations 1.69853 1.06786 1.26170 1.59340 1.25686 0.96530 1.01418 1.03541 0.85100 0.77116 0.78562 0.78288 1.20380 1.21932 1.20018 1.19659 0.91590 0.85271 1.41589 0.90422 1.42400 1.05621 1.00887 1.89306 1.20762 0.93175 0.84176 0.98415 1.21953 0.91765 0.94623 0.87138 0.96589 1.22208 0.92013 0.84872 1.03790 1.48013 1.44782 1.34512 1.06668 1.21211 0.82705 0.84881 0.82629 1.90733 1.52741 1.58747 1.42900 1.22432 0.99036 0.96681 0.84697 1.88049 1.66655 1.54702 1.21980 1.22387 0.91215 0.85880 0.97675 1.22035 0.98885 0.94494 1.02327 1.21490 0.98669 0.97392 0.97443 1.21602 0.99730 0.97383 0.97445 1.21490 0.97434 0.93501 1.02439 1.21625 0.98959 0.99501 0.95760 1.22430 0.98733 0.94837 0.86278 1.22441 1.03445 0.95101 0.98405 1.22439 0.89125 0.90091 0.99732 1.86362 1.45773 1.56843 1.42492 0.93980 0.79475 0.94712 0.95048 0.87479 0.90454 0.87739 0.86856 0.89904 0.92859 0.90881 0.90540 0.90833 0.90411 0.92677 0.90620 0.91039 0.92263 0.92800 0.87070 0.88237 0.85766 0.90595 0.94089 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.02 13.06 21.65 0.28 -62.73 16 2 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 3 Si 0.98 48.47 29.55 68.60 2.03 50.50 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.25 -15.03 9.99 84.04 0.84 -14.19 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.74 -41.98 5.49 -343.45 -1.88 -43.86 16 10 C 0.16 7.35 5.95 86.38 0.51 7.86 16 11 C 0.11 4.03 2.74 31.39 0.09 4.12 16 12 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 13 C 0.10 2.80 4.91 87.44 0.43 3.23 16 14 N -0.61 -14.08 2.18 -816.90 -1.78 -15.86 16 15 C 0.50 13.80 7.71 87.66 0.68 14.48 16 16 O -0.57 -22.91 15.93 16.02 0.26 -22.65 16 17 C 0.05 0.91 4.56 71.24 0.33 1.23 16 18 O -0.39 -9.54 9.52 -129.94 -1.24 -10.77 16 19 C 0.09 1.35 2.61 30.60 0.08 1.43 16 20 C -0.14 -1.80 5.54 30.59 0.17 -1.63 16 21 C -0.11 -0.97 5.92 30.59 0.18 -0.79 16 22 C -0.12 -1.18 5.92 30.59 0.18 -1.00 16 23 C -0.11 -1.21 5.92 30.59 0.18 -1.03 16 24 C -0.12 -2.02 5.57 30.59 0.17 -1.85 16 25 C 0.10 1.20 5.99 86.38 0.52 1.72 16 26 C -0.16 -2.31 5.79 30.31 0.18 -2.13 16 27 C 0.06 1.55 6.38 71.50 0.46 2.01 16 28 O -0.40 -14.49 9.18 -117.88 -1.08 -15.57 16 29 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.37 22.81 7.53 -92.70 -0.70 22.11 16 31 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 2.64 8.11 -2.38 -0.02 2.62 16 34 H 0.08 2.54 7.28 -2.39 -0.02 2.52 16 35 H 0.11 1.29 7.35 -2.39 -0.02 1.27 16 36 H 0.11 1.18 7.77 -2.39 -0.02 1.16 16 37 H 0.08 0.92 7.79 -2.39 -0.02 0.90 16 38 H 0.05 0.89 8.14 -2.38 -0.02 0.88 16 39 H 0.07 0.78 7.87 -2.39 -0.02 0.76 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.11 0.69 5.88 -2.39 -0.01 0.68 16 49 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.08 1.31 8.01 -2.39 -0.02 1.30 16 52 H 0.04 1.05 7.40 -2.39 -0.02 1.03 16 53 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -84.87 410.50 2.21 -82.66 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.18 Total: 29.25 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 5.45 Total: 9.04 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -3.38 Total: -122.46 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -2.06 Total: -49.00 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -84.87 2.21 -82.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200879905.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.378 kcal (2) G-P(sol) polarization free energy of solvation -84.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds