Wall clock time and date at job start Sat Apr 11 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00301 * 2 1 4 4 H 1.48500 * 109.47511 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47304 * 299.99725 * 3 2 1 6 6 H 1.48507 * 109.47306 * 59.99985 * 3 2 1 7 7 C 1.38822 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99976 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99971 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47220 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46451 * 304.99002 * 11 10 9 13 13 C 1.54804 * 109.46963 * 184.99815 * 11 10 9 14 14 N 1.45122 * 109.52846 * 172.10539 * 13 11 10 15 15 C 1.34775 * 118.75283 * 269.29245 * 14 13 11 16 16 O 1.21282 * 120.00516 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99946 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47177 * 180.02562 * 18 17 15 20 20 H 1.09000 * 109.52186 * 304.87065 * 19 18 17 21 21 C 1.53173 * 109.52092 * 184.68229 * 19 18 17 22 22 C 1.53177 * 109.04588 * 183.11928 * 21 19 18 23 23 C 1.53092 * 109.16443 * 56.96276 * 22 21 19 24 24 O 1.42905 * 109.42428 * 302.41109 * 23 22 21 25 25 C 1.42901 * 114.09770 * 61.14988 * 24 23 22 26 26 C 1.47495 * 122.48740 * 89.57076 * 14 13 11 27 27 C 1.53952 * 110.82236 * 317.97144 * 26 14 13 28 28 C 1.51534 * 109.72724 * 320.31073 * 27 26 14 29 29 O 1.38018 * 109.46957 * 64.98158 * 11 10 9 30 30 H 0.96998 * 119.99480 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99825 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47377 * 60.00111 * 10 9 7 33 33 H 1.09005 * 109.47446 * 299.99589 * 10 9 7 34 34 H 1.09001 * 109.45698 * 52.08586 * 13 11 10 35 35 H 1.09002 * 109.46061 * 292.12187 * 13 11 10 36 36 H 1.09001 * 109.47003 * 59.99816 * 17 15 14 37 37 H 1.09002 * 109.46792 * 299.99933 * 17 15 14 38 38 H 1.09001 * 109.47313 * 59.99865 * 18 17 15 39 39 H 1.09005 * 109.46760 * 300.00143 * 18 17 15 40 40 H 1.08995 * 109.54947 * 302.97997 * 21 19 18 41 41 H 1.09003 * 109.54673 * 63.15674 * 21 19 18 42 42 H 1.09004 * 109.51365 * 297.06592 * 22 21 19 43 43 H 1.08998 * 109.53811 * 176.88037 * 22 21 19 44 44 H 1.09002 * 109.48343 * 182.42096 * 23 22 21 45 45 H 1.08999 * 109.47546 * 62.39689 * 23 22 21 46 46 H 1.09002 * 109.48282 * 58.82206 * 25 24 23 47 47 H 1.08998 * 109.48567 * 178.85973 * 25 24 23 48 48 H 1.08999 * 109.17100 * 78.49163 * 26 14 13 49 49 H 1.09002 * 109.16743 * 197.69605 * 26 14 13 50 50 H 1.08995 * 109.46556 * 200.17409 * 27 26 14 51 51 H 1.09002 * 109.27281 * 80.32187 * 27 26 14 52 52 H 1.08998 * 109.58906 * 331.50191 * 28 27 26 53 53 H 1.09006 * 109.70575 * 211.14589 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8198 -0.0001 12 1 0.3793 -4.7131 0.8416 13 6 1.8334 -6.1568 0.1271 14 7 0.8902 -7.2438 0.3141 15 6 0.5423 -7.5915 1.5689 16 8 1.0160 -6.9998 2.5157 17 6 -0.4345 -8.7166 1.7956 18 6 -0.6557 -8.9050 3.2977 19 6 -1.6469 -10.0476 3.5278 20 1 -2.5663 -9.8487 2.9770 21 6 -1.9590 -10.1611 5.0231 22 6 -2.8901 -11.3560 5.2502 23 6 -2.2286 -12.6209 4.6968 24 8 -1.9371 -12.4369 3.3099 25 6 -1.0333 -11.3631 3.0412 26 6 0.3025 -7.9861 -0.8168 27 6 -0.0931 -7.0272 -1.9544 28 6 -0.6918 -5.7626 -1.3724 29 8 0.3469 -4.8116 -1.1795 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6846 -3.7147 0.8905 33 1 2.6846 -3.7147 -0.8895 34 1 2.5063 -6.1084 0.9832 35 1 2.4122 -6.3304 -0.7802 36 1 -0.0348 -9.6363 1.3686 37 1 -1.3835 -8.4758 1.3163 38 1 -1.0556 -7.9851 3.7243 39 1 0.2931 -9.1455 3.7773 40 1 -1.0331 -10.3100 5.5786 41 1 -2.4460 -9.2476 5.3644 42 1 -3.8353 -11.1841 4.7350 43 1 -3.0731 -11.4779 6.3177 44 1 -2.9050 -13.4672 4.8169 45 1 -1.3038 -12.8147 5.2401 46 1 -0.0928 -11.5403 3.5629 47 1 -0.8486 -11.3031 1.9687 48 1 1.0304 -8.7072 -1.1886 49 1 -0.5842 -8.5188 -0.4731 50 1 -0.8255 -7.5119 -2.5999 51 1 0.7931 -6.7747 -2.5366 52 1 -1.1632 -5.9881 -0.4159 53 1 -1.4350 -5.3578 -2.0595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201748247.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:33 Heat of formation + Delta-G solvation = -149.447863 kcal Electronic energy + Delta-G solvation = -30770.816429 eV Core-core repulsion = 26641.373625 eV Total energy + Delta-G solvation = -4129.442804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70153 -40.43261 -39.66045 -36.91277 -36.27634 -36.09242 -34.34385 -33.65686 -32.66251 -31.22278 -29.92058 -27.91483 -26.78511 -26.00167 -25.75417 -24.32776 -22.94501 -22.32237 -22.25736 -21.02287 -19.87047 -19.28465 -18.43359 -17.76064 -17.54906 -17.38212 -17.00367 -16.88559 -16.51963 -16.22331 -15.73911 -15.72612 -15.21543 -15.14809 -15.01370 -14.81349 -14.73428 -14.44254 -14.09032 -13.87311 -13.66904 -13.56003 -13.31433 -13.25896 -13.06989 -12.83520 -12.80858 -12.56615 -12.29222 -12.25330 -12.10254 -12.07577 -11.99756 -11.83830 -11.71733 -11.51520 -11.41805 -11.15400 -11.01234 -10.81550 -10.56273 -10.36662 -9.63810 -9.03763 -7.96224 -5.26232 1.45240 1.47679 1.57357 1.58271 1.95082 2.54735 2.71741 2.97859 3.37210 3.44573 3.63270 3.67851 3.79381 3.85659 3.91186 3.99206 4.02869 4.07939 4.11185 4.22665 4.24966 4.29381 4.32729 4.37786 4.45501 4.51234 4.55380 4.56388 4.61370 4.69756 4.75087 4.76942 4.83697 4.86735 4.87271 4.90407 4.94522 5.07825 5.08715 5.13068 5.14920 5.19956 5.23367 5.26645 5.43938 5.45593 5.54186 6.24422 6.28217 6.30681 6.74577 7.14789 7.30361 8.04180 8.29580 9.27975 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.002137 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.907700 B =13101.950461 C =13944.307129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.162 3.838 11 C 0.106 3.894 12 H 0.017 0.983 13 C 0.094 3.906 14 N -0.611 5.611 15 C 0.496 3.504 16 O -0.586 6.586 17 C -0.133 4.133 18 C -0.092 4.092 19 C -0.114 4.114 20 H 0.084 0.916 21 C -0.123 4.123 22 C -0.153 4.153 23 C 0.054 3.946 24 O -0.401 6.401 25 C 0.061 3.939 26 C 0.099 3.901 27 C -0.157 4.157 28 C 0.064 3.936 29 O -0.398 6.398 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.104 0.896 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.111 0.889 48 H 0.095 0.905 49 H 0.114 0.886 50 H 0.121 0.879 51 H 0.073 0.927 52 H 0.042 0.958 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -31.720 2.589 32.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.035 3.965 11 C 0.046 3.954 12 H 0.035 0.965 13 C -0.030 4.030 14 N -0.343 5.343 15 C 0.286 3.714 16 O -0.466 6.466 17 C -0.172 4.172 18 C -0.131 4.131 19 C -0.132 4.132 20 H 0.102 0.898 21 C -0.161 4.161 22 C -0.190 4.190 23 C -0.023 4.023 24 O -0.320 6.320 25 C -0.015 4.015 26 C -0.021 4.021 27 C -0.195 4.195 28 C -0.012 4.012 29 O -0.317 6.317 30 H 0.060 0.940 31 H 0.204 0.796 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.128 0.872 48 H 0.113 0.887 49 H 0.132 0.868 50 H 0.139 0.861 51 H 0.091 0.909 52 H 0.060 0.940 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.672 -31.341 2.774 31.809 hybrid contribution 0.063 1.570 0.658 1.703 sum -4.610 -29.771 3.432 30.321 Atomic orbital electron populations 1.69862 1.06806 1.26039 1.59493 1.25685 0.96529 1.01425 1.03586 0.84965 0.78191 0.79199 0.76732 1.18819 1.21730 1.21949 1.19732 0.91613 0.85230 1.41296 0.90353 1.42440 1.05568 1.00984 1.89293 1.20761 0.93213 0.84136 0.98400 1.21862 0.92712 0.94698 0.86160 0.96494 1.22057 0.92073 0.85483 1.03435 1.48109 1.44794 1.34211 1.07184 1.21661 0.82418 0.85178 0.82108 1.90716 1.56553 1.56576 1.42757 1.21859 0.99146 0.97129 0.99043 1.21240 0.99339 0.97982 0.94492 1.21743 0.99336 0.94979 0.97184 0.89805 1.21666 0.99960 0.98829 0.95619 1.22173 0.99310 0.95146 1.02399 1.22732 0.99938 0.97899 0.81682 1.87909 1.66172 1.52287 1.25659 1.22818 0.91434 0.84982 1.02262 1.22447 1.00300 0.93777 0.85596 1.22495 1.03207 0.95338 0.98441 1.22407 0.89173 0.89549 1.00096 1.86353 1.49399 1.58033 1.37940 0.93983 0.79590 0.94818 0.94900 0.90490 0.88073 0.85614 0.86646 0.93021 0.92197 0.91907 0.91735 0.91274 0.89717 0.87784 0.92811 0.93052 0.87157 0.88686 0.86812 0.86078 0.90874 0.93975 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.80 13.06 21.65 0.28 -62.51 16 2 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 3 Si 0.98 48.25 29.55 68.60 2.03 50.28 16 4 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 7 C -0.25 -14.79 9.99 84.04 0.84 -13.95 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.74 -41.71 5.54 -343.44 -1.90 -43.61 16 10 C 0.16 7.27 5.92 86.38 0.51 7.78 16 11 C 0.11 3.98 2.68 31.21 0.08 4.07 16 12 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 13 C 0.09 2.71 4.86 87.25 0.42 3.13 16 14 N -0.61 -13.58 2.18 -817.25 -1.78 -15.36 16 15 C 0.50 12.24 7.63 87.66 0.67 12.91 16 16 O -0.59 -20.73 15.41 -3.03 -0.05 -20.78 16 17 C -0.13 -1.87 3.79 29.85 0.11 -1.76 16 18 C -0.09 -1.56 3.98 30.59 0.12 -1.43 16 19 C -0.11 -1.47 2.39 -10.70 -0.03 -1.50 16 20 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 21 C -0.12 -1.64 5.31 30.71 0.16 -1.47 16 22 C -0.15 -1.67 6.14 30.68 0.19 -1.48 16 23 C 0.05 0.61 6.84 72.01 0.49 1.10 16 24 O -0.40 -6.07 10.77 -148.98 -1.60 -7.68 16 25 C 0.06 0.73 5.82 72.01 0.42 1.15 16 26 C 0.10 1.24 6.04 86.51 0.52 1.76 16 27 C -0.16 -2.39 5.79 30.44 0.18 -2.22 16 28 C 0.06 1.59 6.37 71.50 0.46 2.05 16 29 O -0.40 -14.47 9.38 -117.90 -1.11 -15.58 16 30 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.37 22.62 7.65 -92.71 -0.71 21.91 16 32 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.08 2.46 7.27 -2.39 -0.02 2.44 16 35 H 0.10 2.50 8.11 -2.39 -0.02 2.48 16 36 H 0.13 0.97 6.52 -2.39 -0.02 0.95 16 37 H 0.12 1.20 7.42 -2.39 -0.02 1.18 16 38 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 39 H 0.06 1.15 8.10 -2.38 -0.02 1.13 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.11 0.89 6.69 -2.39 -0.02 0.88 16 48 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.11 0.75 5.87 -2.39 -0.01 0.74 16 50 H 0.12 1.03 8.14 -2.39 -0.02 1.02 16 51 H 0.07 1.31 8.01 -2.39 -0.02 1.29 16 52 H 0.04 1.07 7.41 -2.39 -0.02 1.06 16 53 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -81.34 407.55 1.66 -79.68 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.17 Total: 29.84 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.62 Total: 5.72 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -3.40 Total: -121.49 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -2.76 Total: -44.03 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -81.34 1.66 -79.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201748247.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.766 kcal (2) G-P(sol) polarization free energy of solvation -81.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds