Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48497 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46854 * 299.99923 * 3 2 1 6 6 H 1.48499 * 109.47155 * 59.99996 * 3 2 1 7 7 C 1.38817 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99835 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00437 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00390 * 174.60297 * 9 7 2 11 11 C 1.53001 * 110.01433 * 301.46337 * 10 9 7 12 12 N 1.46504 * 109.47170 * 303.89912 * 11 10 9 13 13 C 1.34777 * 120.00009 * 175.13263 * 12 11 10 14 14 O 1.21287 * 119.99553 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99845 * 179.72581 * 13 12 11 16 16 C 1.53004 * 109.47059 * 180.27265 * 15 13 12 17 17 O 1.42892 * 109.47273 * 180.02562 * 16 15 13 18 18 C 1.42907 * 114.00207 * 180.02562 * 17 16 15 19 19 C 1.53180 * 109.53882 * 269.55441 * 18 17 16 20 20 C 1.53095 * 109.15955 * 183.14716 * 19 18 17 21 21 O 1.42911 * 109.41109 * 57.61115 * 20 19 18 22 22 C 1.42901 * 114.09912 * 298.83709 * 21 20 19 23 23 C 1.53099 * 109.41212 * 61.15980 * 22 21 20 24 24 C 1.54261 * 110.07083 * 62.87781 * 10 9 7 25 25 C 1.54892 * 104.19481 * 95.70003 * 24 10 9 26 26 C 1.54887 * 102.74885 * 37.93904 * 25 24 10 27 27 C 1.53873 * 110.03230 * 180.02562 * 10 9 7 28 28 H 0.96995 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00117 * 354.60521 * 9 7 2 30 30 H 1.09004 * 109.46848 * 183.90351 * 11 10 9 31 31 H 1.09001 * 109.47429 * 63.90183 * 11 10 9 32 32 H 0.96994 * 119.99651 * 355.12890 * 12 11 10 33 33 H 1.08991 * 109.47231 * 300.27158 * 15 13 12 34 34 H 1.09005 * 109.47393 * 60.27755 * 15 13 12 35 35 H 1.09005 * 109.47051 * 300.00203 * 16 15 13 36 36 H 1.09002 * 109.47411 * 59.99563 * 16 15 13 37 37 H 1.08994 * 109.53936 * 29.81692 * 18 17 16 38 38 H 1.08992 * 109.52757 * 303.05172 * 19 18 17 39 39 H 1.09002 * 109.52621 * 63.25150 * 19 18 17 40 40 H 1.08996 * 109.48491 * 297.63155 * 20 19 18 41 41 H 1.09002 * 109.48329 * 177.58861 * 20 19 18 42 42 H 1.08994 * 109.48522 * 301.18130 * 22 21 20 43 43 H 1.08996 * 109.49230 * 181.14375 * 22 21 20 44 44 H 1.08996 * 109.52349 * 182.48485 * 23 22 21 45 45 H 1.08998 * 109.52118 * 62.29643 * 23 22 21 46 46 H 1.08993 * 110.48835 * 214.37552 * 24 10 9 47 47 H 1.09005 * 110.49054 * 337.02499 * 24 10 9 48 48 H 1.09000 * 110.75559 * 279.62556 * 25 24 10 49 49 H 1.08996 * 110.75675 * 156.26000 * 25 24 10 50 50 H 1.08999 * 110.48639 * 203.37990 * 26 25 24 51 51 H 1.09001 * 110.48243 * 80.73632 * 26 25 24 52 52 H 1.09000 * 110.03615 * 359.95040 * 27 10 9 53 53 H 1.08999 * 110.03078 * 121.38187 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0532 -3.6541 -0.1182 11 6 2.8623 -3.6732 -1.4167 12 7 1.9682 -3.4363 -2.5528 13 6 2.4756 -3.3118 -3.7951 14 8 3.6725 -3.3954 -3.9725 15 6 1.5553 -3.0743 -4.9646 16 6 2.3790 -2.9781 -6.2504 17 8 1.5064 -2.7523 -7.3592 18 6 2.1787 -2.6468 -8.6159 19 6 2.5389 -1.1821 -8.8828 20 6 3.1876 -1.0681 -10.2649 21 8 2.2910 -1.5781 -11.2540 22 6 1.9558 -2.9566 -11.0825 23 6 1.2577 -3.1465 -9.7332 24 6 2.9915 -3.8410 1.0919 25 6 2.1742 -4.7158 2.0747 26 6 1.4382 -5.6965 1.1283 27 6 1.0657 -4.8339 -0.0939 28 1 -0.4849 0.8400 -0.0004 29 1 0.3587 -2.3900 0.0791 30 1 3.3444 -4.6443 -1.5300 31 1 3.6219 -2.8922 -1.3831 32 1 1.0110 -3.3692 -2.4108 33 1 0.8502 -3.9014 -5.0459 34 1 1.0081 -2.1438 -4.8132 35 1 3.0842 -2.1509 -6.1691 36 1 2.9263 -3.9085 -6.4018 37 1 3.0869 -3.2491 -8.5951 38 1 1.6353 -0.5735 -8.8533 39 1 3.2384 -0.8345 -8.1225 40 1 4.1126 -1.6445 -10.2810 41 1 3.4072 -0.0220 -10.4782 42 1 2.8646 -3.5577 -11.1092 43 1 1.2882 -3.2711 -11.8845 44 1 1.0408 -4.2037 -9.5809 45 1 0.3281 -2.5775 -9.7208 46 1 3.9039 -4.3558 0.7912 47 1 3.2272 -2.8776 1.5443 48 1 1.4612 -4.1080 2.6316 49 1 2.8353 -5.2558 2.7525 50 1 0.5405 -6.0873 1.6072 51 1 2.0999 -6.5110 0.8335 52 1 0.0451 -4.4646 0.0071 53 1 1.1622 -5.4205 -1.0076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270813008.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -159.836980 kcal Electronic energy + Delta-G solvation = -30413.935097 eV Core-core repulsion = 26284.041787 eV Total energy + Delta-G solvation = -4129.893310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.00982 -40.55611 -39.60977 -38.44640 -35.56317 -35.10691 -34.04472 -32.55127 -32.13519 -31.90052 -29.56580 -29.34471 -26.50165 -25.57597 -24.97135 -24.61808 -23.82680 -21.79816 -21.41609 -20.93918 -20.04526 -18.93437 -18.55604 -17.56101 -17.42523 -17.22425 -16.91764 -16.79382 -16.54359 -16.17060 -15.88007 -15.77337 -15.70181 -15.20510 -15.08145 -14.77885 -14.64199 -14.19096 -14.12069 -13.97842 -13.58406 -13.33379 -13.22812 -12.98325 -12.91720 -12.72336 -12.45732 -12.35403 -12.31633 -12.16784 -12.11509 -11.87217 -11.81893 -11.71628 -11.58746 -11.39085 -11.37298 -11.31549 -11.01290 -10.82162 -10.69252 -10.53317 -9.91704 -8.94786 -7.91933 -5.16791 1.41412 1.45182 1.51276 1.65960 2.06953 2.55036 2.79166 2.94967 3.39857 3.70558 3.71042 3.77556 3.79276 3.86675 3.94438 3.95144 4.01460 4.03404 4.14591 4.18050 4.23703 4.33451 4.44810 4.47975 4.56188 4.59381 4.67203 4.67671 4.72460 4.77061 4.77886 4.78830 4.83227 4.88316 4.98782 5.01892 5.06142 5.09476 5.14858 5.17432 5.19713 5.28298 5.40988 5.49570 5.58414 5.62441 5.68146 6.15286 6.19376 6.32297 6.64515 7.28821 7.39760 8.13852 8.37960 9.30611 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.002481 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.989499 B =11284.839878 C =12933.262577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.064 4.064 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.295 1.295 7 C -0.211 4.211 8 H 0.062 0.938 9 N -0.713 5.713 10 C 0.183 3.817 11 C 0.127 3.873 12 N -0.695 5.695 13 C 0.512 3.488 14 O -0.594 6.594 15 C -0.131 4.131 16 C 0.087 3.913 17 O -0.392 6.392 18 C 0.082 3.918 19 C -0.180 4.180 20 C 0.065 3.935 21 O -0.402 6.402 22 C 0.062 3.938 23 C -0.149 4.149 24 C -0.132 4.132 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.120 4.120 28 H 0.247 0.753 29 H 0.376 0.624 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.408 0.592 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.062 0.938 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -12.894 -15.103 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.257 4.257 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.223 1.223 7 C -0.343 4.343 8 H 0.080 0.920 9 N -0.354 5.354 10 C 0.092 3.908 11 C 0.001 3.999 12 N -0.344 5.344 13 C 0.299 3.701 14 O -0.476 6.476 15 C -0.171 4.171 16 C 0.010 3.990 17 O -0.312 6.312 18 C 0.024 3.976 19 C -0.218 4.218 20 C -0.012 4.012 21 O -0.321 6.321 22 C -0.014 4.014 23 C -0.187 4.187 24 C -0.172 4.172 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.158 4.158 28 H 0.057 0.943 29 H 0.209 0.791 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.244 0.756 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.096 0.904 50 H 0.092 0.908 51 H 0.099 0.901 52 H 0.081 0.919 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.409 -12.705 -15.345 20.212 hybrid contribution 0.038 1.626 0.721 1.779 sum 3.447 -11.079 -14.624 18.668 Atomic orbital electron populations 1.69752 1.05820 1.25361 1.60147 1.25194 0.96058 0.99754 1.04684 0.85461 0.78246 0.81986 0.76456 1.20178 1.22702 1.22276 1.19244 0.90723 0.85081 1.39255 0.92037 1.42625 1.05611 1.00124 1.87005 1.20740 0.92070 0.86512 0.91431 1.21761 0.92634 0.99070 0.86481 1.45722 1.11650 1.71031 1.06036 1.20760 0.88726 0.75629 0.84971 1.90639 1.17575 1.53380 1.85999 1.21401 0.98683 1.06220 0.90789 1.22021 0.91568 1.00370 0.85025 1.87850 1.34740 1.93298 1.15299 1.22290 0.95984 0.95660 0.83645 1.22730 1.02268 0.97763 0.99039 1.22630 0.91719 1.00976 0.85854 1.87918 1.66312 1.26904 1.50975 1.22749 1.00015 0.82166 0.96517 1.22293 0.99423 1.03162 0.93787 1.22783 0.98260 0.99475 0.96724 1.22357 0.98521 0.96962 0.97258 1.22277 1.00523 0.97309 0.94849 1.22363 0.98409 0.95317 0.99683 0.94345 0.79054 0.91396 0.95045 0.75633 0.85802 0.88191 0.93971 0.92211 0.91112 0.91395 0.90889 0.91706 0.87555 0.91596 0.86566 0.88935 0.91192 0.91229 0.93549 0.93306 0.90436 0.90761 0.90146 0.91927 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.59 13.06 21.65 0.28 -55.30 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 3 Si 0.95 46.18 29.55 68.60 2.03 48.20 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 6 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 7 C -0.21 -10.90 8.39 84.04 0.70 -10.20 16 8 H 0.06 3.26 7.23 -2.91 -0.02 3.23 16 9 N -0.71 -31.58 4.76 -300.07 -1.43 -33.01 16 10 C 0.18 6.31 0.68 4.32 0.00 6.31 16 11 C 0.13 4.49 3.99 86.38 0.34 4.83 16 12 N -0.70 -23.31 5.10 -463.04 -2.36 -25.68 16 13 C 0.51 17.32 7.83 87.66 0.69 18.01 16 14 O -0.59 -23.90 15.98 -3.05 -0.05 -23.95 16 15 C -0.13 -3.50 6.07 29.85 0.18 -3.32 16 16 C 0.09 2.29 5.04 71.98 0.36 2.65 16 17 O -0.39 -9.82 10.00 -148.98 -1.49 -11.31 16 18 C 0.08 1.64 2.70 30.71 0.08 1.72 16 19 C -0.18 -3.57 5.76 30.69 0.18 -3.39 16 20 C 0.06 1.06 6.84 72.01 0.49 1.55 16 21 O -0.40 -7.56 10.77 -148.98 -1.60 -9.16 16 22 C 0.06 0.85 6.84 72.02 0.49 1.34 16 23 C -0.15 -2.43 5.79 30.69 0.18 -2.25 16 24 C -0.13 -4.34 5.94 31.67 0.19 -4.15 16 25 C -0.11 -3.08 6.91 31.89 0.22 -2.86 16 26 C -0.11 -2.57 6.83 31.63 0.22 -2.35 16 27 C -0.12 -3.26 5.80 31.28 0.18 -3.08 16 28 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.38 17.94 7.28 -92.71 -0.67 17.27 16 30 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.03 1.33 7.49 -2.39 -0.02 1.31 16 32 H 0.41 13.02 7.99 -92.71 -0.74 12.28 16 33 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 35 H 0.04 1.22 7.95 -2.38 -0.02 1.20 16 36 H 0.06 1.51 8.04 -2.39 -0.02 1.49 16 37 H 0.07 1.29 7.79 -2.39 -0.02 1.27 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.49 7.99 -2.39 -0.02 1.47 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 2.03 7.85 -2.39 -0.02 2.01 16 47 H 0.05 1.81 7.12 -2.38 -0.02 1.79 16 48 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.06 1.82 7.44 -2.39 -0.02 1.80 16 53 H 0.08 1.88 7.55 -2.39 -0.02 1.86 16 Total: -1.00 -66.11 415.48 -0.17 -66.28 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.52 Total: 42.19 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 4.98 Total: 1.74 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -3.51 Total: -113.99 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -3.14 Total: -44.41 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -66.11 -0.17 -66.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270813008.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.562 kcal (2) G-P(sol) polarization free energy of solvation -66.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds