Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48502 * 109.47199 * 240.00254 * 3 2 1 5 5 H 1.48499 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47102 * 119.99866 * 3 2 1 7 7 C 1.38817 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99327 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99753 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47121 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.46427 * 65.00309 * 11 10 9 13 13 N 1.46497 * 109.47036 * 305.00021 * 11 10 9 14 14 C 1.34777 * 119.99525 * 154.99621 * 13 11 10 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 11 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 O 1.42961 * 109.47021 * 294.99809 * 17 16 14 19 19 C 1.43089 * 113.77117 * 181.20178 * 18 17 16 20 20 C 1.53262 * 108.94198 * 57.97358 * 19 18 17 21 21 C 1.53266 * 108.84270 * 305.47644 * 20 19 18 22 22 O 1.42962 * 109.47130 * 174.99723 * 17 16 14 23 23 C 1.53001 * 109.47065 * 184.99876 * 11 10 9 24 24 C 1.52998 * 109.47229 * 300.00303 * 23 11 10 25 25 C 1.53001 * 109.47229 * 180.02562 * 24 23 11 26 26 C 1.53002 * 109.46745 * 59.99828 * 25 24 23 27 27 C 1.52998 * 109.47397 * 300.00069 * 26 25 24 28 28 C 1.52995 * 109.46939 * 180.02562 * 23 11 10 29 29 H 0.96990 * 120.00209 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00610 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47305 * 60.00040 * 10 9 7 32 32 H 1.08994 * 109.46986 * 300.00002 * 10 9 7 33 33 H 0.97000 * 120.00580 * 335.00367 * 13 11 10 34 34 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 35 35 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 36 36 H 1.09000 * 109.47217 * 54.99834 * 17 16 14 37 37 H 1.08996 * 109.56385 * 298.13466 * 19 18 17 38 38 H 1.09002 * 109.55857 * 177.80831 * 19 18 17 39 39 H 1.08997 * 109.57810 * 185.66624 * 20 19 18 40 40 H 1.09004 * 109.67829 * 65.34329 * 20 19 18 41 41 H 1.08999 * 109.55324 * 294.68402 * 21 20 19 42 42 H 1.08998 * 109.64332 * 174.41692 * 21 20 19 43 43 H 1.09002 * 109.46839 * 60.00194 * 23 11 10 44 44 H 1.09002 * 109.47122 * 299.99718 * 24 23 11 45 45 H 1.09002 * 109.47259 * 59.99920 * 24 23 11 46 46 H 1.09001 * 109.46721 * 300.00431 * 25 24 23 47 47 H 1.08995 * 109.47392 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.46762 * 180.02562 * 26 25 24 49 49 H 1.08994 * 109.47243 * 60.00152 * 26 25 24 50 50 H 1.09002 * 109.47122 * 300.00509 * 27 26 25 51 51 H 1.09002 * 109.47259 * 180.02562 * 27 26 25 52 52 H 1.09003 * 109.46965 * 300.00097 * 28 23 11 53 53 H 1.08994 * 109.47294 * 60.00001 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8198 0.0001 12 1 0.4974 -4.8139 -0.9312 13 7 0.1449 -4.6759 1.1318 14 6 -1.0796 -5.2368 1.0810 15 8 -1.4204 -5.8609 0.0985 16 6 -2.0227 -5.0940 2.2477 17 6 -3.3314 -5.8236 1.9378 18 8 -3.9866 -5.1818 0.8412 19 6 -5.2399 -5.7764 0.4901 20 6 -6.1632 -5.7497 1.7131 21 6 -5.4471 -6.4236 2.8887 22 8 -4.1806 -5.7879 3.0873 23 6 1.8249 -6.1412 0.1258 24 6 2.7848 -6.2914 -1.0561 25 6 3.5452 -7.6131 -0.9308 26 6 2.5506 -8.7757 -0.9305 27 6 1.5907 -8.6255 0.2514 28 6 0.8307 -7.3041 0.1258 29 1 -0.4850 0.8399 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6848 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 0.4175 -4.1769 1.9177 34 1 -1.5673 -5.5273 3.1382 35 1 -2.2280 -4.0378 2.4219 36 1 -3.1167 -6.8598 1.6768 37 1 -5.0794 -6.8079 0.1766 38 1 -5.6960 -5.2127 -0.3238 39 1 -7.0832 -6.2891 1.4881 40 1 -6.3991 -4.7175 1.9724 41 1 -5.2945 -7.4796 2.6660 42 1 -6.0507 -6.3244 3.7909 43 1 2.3914 -6.1470 1.0570 44 1 2.2182 -6.2856 -1.9873 45 1 3.4931 -5.4629 -1.0566 46 1 4.1117 -7.6194 0.0005 47 1 4.2287 -7.7203 -1.7730 48 1 3.0923 -9.7172 -0.8408 49 1 1.9841 -8.7694 -1.8617 50 1 2.1572 -8.6317 1.1826 51 1 0.8824 -9.4540 0.2518 52 1 0.1466 -7.1972 0.9676 53 1 0.2645 -7.2981 -0.8055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271335328.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = -165.263891 kcal Electronic energy + Delta-G solvation = -31688.976712 eV Core-core repulsion = 27558.848074 eV Total energy + Delta-G solvation = -4130.128639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.48466 -40.70519 -39.12951 -37.17688 -36.67314 -35.28712 -34.20706 -33.14920 -32.19743 -31.58108 -30.86784 -28.51390 -26.92618 -25.77694 -24.75520 -23.70994 -22.95436 -22.16933 -21.72564 -21.26334 -20.57670 -19.23350 -18.65516 -17.86897 -17.59075 -17.05290 -16.87038 -16.82770 -16.36231 -15.83592 -15.70776 -15.49100 -15.32717 -15.17047 -14.96999 -14.81432 -14.52550 -14.43426 -14.28606 -13.94438 -13.74059 -13.32826 -13.16087 -13.09579 -12.84232 -12.77634 -12.57762 -12.42439 -12.40907 -12.11137 -12.09692 -12.06519 -11.95603 -11.81274 -11.76295 -11.37934 -11.12258 -11.00219 -10.95542 -10.82550 -10.70722 -10.63120 -9.81402 -8.98951 -7.92202 -5.22088 1.48552 1.51364 1.57504 1.73430 2.03761 2.57199 2.68690 2.83055 3.41677 3.62080 3.70668 3.77067 3.78550 3.82419 3.87652 3.92394 4.08845 4.17546 4.19381 4.26766 4.31777 4.40976 4.43236 4.49396 4.49906 4.53114 4.62206 4.68096 4.70495 4.72515 4.75610 4.81362 4.82100 4.84585 4.94605 5.05035 5.10822 5.18455 5.22638 5.32321 5.33523 5.37243 5.44275 5.48968 5.53048 5.62526 5.72276 5.86998 6.18642 6.27765 6.64752 7.34759 7.35132 8.09417 8.33044 9.30528 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006655 B = 0.004226 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4206.175884 B = 6624.280179 C =10287.963996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.743 5.743 10 C 0.147 3.853 11 C 0.155 3.845 12 H 0.052 0.948 13 N -0.708 5.708 14 C 0.521 3.479 15 O -0.561 6.561 16 C -0.127 4.127 17 C 0.269 3.731 18 O -0.410 6.410 19 C 0.046 3.954 20 C -0.186 4.186 21 C 0.050 3.950 22 O -0.409 6.409 23 C -0.080 4.080 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.095 4.095 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.408 0.592 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.051 0.949 50 H 0.067 0.933 51 H 0.060 0.940 52 H 0.048 0.952 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 -20.736 5.924 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.021 3.979 11 C 0.050 3.950 12 H 0.071 0.929 13 N -0.359 5.359 14 C 0.308 3.692 15 O -0.440 6.440 16 C -0.167 4.167 17 C 0.174 3.826 18 O -0.331 6.331 19 C -0.030 4.030 20 C -0.224 4.224 21 C -0.026 4.026 22 O -0.330 6.330 23 C -0.100 4.100 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.153 4.153 28 C -0.133 4.133 29 H 0.058 0.942 30 H 0.205 0.795 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.244 0.756 34 H 0.161 0.839 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.067 0.933 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.094 -20.830 5.294 21.879 hybrid contribution -0.399 1.382 -0.110 1.443 sum -4.493 -19.448 5.185 20.623 Atomic orbital electron populations 1.69834 1.06693 1.26012 1.59349 1.25551 0.96249 1.01057 1.03654 0.85230 0.77147 0.79241 0.78222 1.20605 1.22528 1.20054 1.19597 0.91550 0.85164 1.41365 0.90332 1.42536 1.05620 1.00973 1.89461 1.21134 0.93514 0.84080 0.99209 1.21077 0.89965 0.94847 0.89090 0.92934 1.45856 1.14582 1.54816 1.20615 1.20360 0.82010 0.78314 0.88524 1.90683 1.76141 1.42555 1.34605 1.21492 0.92144 1.04464 0.98561 1.22782 0.87429 0.95379 0.77015 1.88205 1.35674 1.58399 1.50808 1.22844 0.83432 0.98853 0.97844 1.22771 1.00452 1.03196 0.95947 1.22936 0.83485 0.96017 1.00149 1.88031 1.28889 1.79678 1.36444 1.21429 0.96163 0.92558 0.99886 1.21606 0.97883 0.98679 0.97156 1.21490 0.97519 0.93396 1.02506 1.21533 0.97253 0.98639 0.98060 1.21535 0.98222 0.96490 0.99026 1.21458 0.96636 0.94191 1.00972 0.94174 0.79465 0.94443 0.94491 0.75647 0.83937 0.87925 0.91968 0.92178 0.88238 0.86790 0.91049 0.91448 0.86143 0.90015 0.93220 0.91508 0.91182 0.91164 0.90704 0.92998 0.91381 0.92123 0.93339 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.25 -13.52 9.99 84.04 0.84 -12.68 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -37.34 5.43 -343.44 -1.87 -39.21 16 10 C 0.15 5.67 5.31 86.38 0.46 6.13 16 11 C 0.16 5.27 1.99 44.99 0.09 5.36 16 12 H 0.05 2.15 7.58 -2.38 -0.02 2.13 16 13 N -0.71 -22.77 4.41 -442.52 -1.95 -24.72 16 14 C 0.52 17.21 6.07 87.66 0.53 17.74 16 15 O -0.56 -21.61 12.54 10.72 0.13 -21.48 16 16 C -0.13 -3.50 5.78 29.85 0.17 -3.32 16 17 C 0.27 7.60 2.80 71.98 0.20 7.80 16 18 O -0.41 -13.53 9.77 -120.75 -1.18 -14.71 16 19 C 0.05 1.10 6.96 72.07 0.50 1.60 16 20 C -0.19 -3.28 6.35 30.77 0.20 -3.08 16 21 C 0.05 0.88 6.96 72.07 0.50 1.38 16 22 O -0.41 -10.35 10.54 -126.22 -1.33 -11.68 16 23 C -0.08 -2.15 1.96 -10.80 -0.02 -2.17 16 24 C -0.12 -2.84 4.85 30.59 0.15 -2.70 16 25 C -0.11 -2.16 5.92 30.60 0.18 -1.97 16 26 C -0.12 -2.22 5.92 30.59 0.18 -2.04 16 27 C -0.12 -2.38 5.92 30.58 0.18 -2.20 16 28 C -0.09 -2.54 3.72 30.57 0.11 -2.42 16 29 H 0.25 15.12 8.31 -92.72 -0.77 14.35 16 30 H 0.37 20.58 7.33 -92.71 -0.68 19.90 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.44 6.71 -2.39 -0.02 1.42 16 33 H 0.41 12.34 8.60 -92.71 -0.80 11.54 16 34 H 0.14 2.90 8.14 -2.38 -0.02 2.88 16 35 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.06 1.71 7.95 -2.39 -0.02 1.70 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.68 6.54 -2.39 -0.02 1.66 16 46 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.05 1.38 5.77 -2.39 -0.01 1.36 16 53 H 0.04 1.36 7.53 -2.39 -0.02 1.35 16 Total: -1.00 -71.74 405.23 0.28 -71.45 By element: Atomic # 1 Polarization: 48.77 SS G_CDS: -0.58 Total: 48.19 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 4.74 Total: 3.71 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -3.53 Total: -123.65 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -2.38 Total: -47.86 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -71.74 0.28 -71.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271335328.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.809 kcal (2) G-P(sol) polarization free energy of solvation -71.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds