Wall clock time and date at job start Sat Apr 11 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.52364 * 2 1 4 4 C 1.53185 * 109.49862 * 120.08052 * 2 1 3 5 5 N 1.46931 * 108.89485 * 65.38756 * 4 2 1 6 6 C 1.36929 * 120.62941 * 233.55900 * 5 4 2 7 7 H 1.08011 * 119.99715 * 151.82811 * 6 5 4 8 8 C 1.38810 * 120.00256 * 331.82264 * 6 5 4 9 9 N 1.31613 * 120.00273 * 343.07630 * 8 6 5 10 10 Si 1.86803 * 119.99828 * 163.06921 * 8 6 5 11 11 H 1.48503 * 109.47179 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47229 * 120.00279 * 10 8 6 13 13 H 1.48502 * 109.47136 * 240.00365 * 10 8 6 14 14 C 1.46929 * 118.73371 * 53.53551 * 5 4 2 15 15 C 1.53183 * 108.77874 * 306.39215 * 14 5 4 16 16 C 1.53045 * 109.31125 * 54.63600 * 15 14 5 17 17 H 1.08998 * 109.45992 * 58.64813 * 16 15 14 18 18 N 1.46500 * 109.45951 * 178.61387 * 16 15 14 19 19 C 1.34782 * 120.00208 * 275.00263 * 18 16 15 20 20 O 1.21280 * 119.99800 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00297 * 179.97438 * 19 18 16 22 22 O 1.42894 * 109.47336 * 180.02562 * 21 19 18 23 23 C 1.42898 * 114.00224 * 180.02562 * 22 21 19 24 24 C 1.53001 * 109.47213 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.82274 * 305.56387 * 24 23 22 26 26 C 1.54381 * 109.82886 * 184.58230 * 24 23 22 27 27 C 1.55299 * 102.25423 * 219.12764 * 26 24 23 28 28 C 1.54947 * 100.94150 * 34.13301 * 27 26 24 29 29 O 1.43235 * 109.83023 * 66.45122 * 24 23 22 30 30 H 1.08999 * 109.47432 * 299.91663 * 1 2 3 31 31 H 1.09004 * 109.47306 * 59.91927 * 1 2 3 32 32 H 1.08996 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47133 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47183 * 300.08261 * 3 2 1 35 35 H 1.09003 * 109.46989 * 60.07820 * 3 2 1 36 36 H 1.09003 * 109.59169 * 305.52931 * 4 2 1 37 37 H 1.09001 * 109.58949 * 185.24581 * 4 2 1 38 38 H 0.96997 * 120.00271 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.58221 * 66.18281 * 14 5 4 40 40 H 1.09000 * 109.58270 * 186.59944 * 14 5 4 41 41 H 1.09000 * 109.49979 * 174.59045 * 15 14 5 42 42 H 1.09000 * 109.49611 * 294.65411 * 15 14 5 43 43 H 0.97007 * 120.00372 * 94.99851 * 18 16 15 44 44 H 1.09004 * 109.46877 * 300.00152 * 21 19 18 45 45 H 1.09002 * 109.47119 * 59.99560 * 21 19 18 46 46 H 1.09003 * 109.46817 * 299.99412 * 23 22 21 47 47 H 1.08993 * 109.47387 * 59.99221 * 23 22 21 48 48 H 1.09000 * 110.84810 * 337.32182 * 26 24 23 49 49 H 1.09003 * 110.84867 * 100.93822 * 26 24 23 50 50 H 1.09006 * 111.12646 * 276.21705 * 27 26 24 51 51 H 1.09005 * 111.16379 * 152.06865 * 27 26 24 52 52 H 1.08996 * 110.31164 * 204.63784 * 28 27 26 53 53 H 1.09003 * 110.39145 * 82.51104 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 1.6544 -2.1390 1.1714 6 6 0.9683 -2.7324 2.1972 7 1 0.3078 -3.5629 1.9959 8 6 1.1217 -2.2665 3.4958 9 7 2.1465 -1.5001 3.8032 10 14 -0.1265 -2.7273 4.8069 11 1 -1.1757 -3.5919 4.2095 12 1 0.5550 -3.4622 5.9028 13 1 -0.7508 -1.4946 5.3510 14 6 2.0172 -2.9053 -0.0286 15 6 1.5034 -2.1594 -1.2640 16 6 2.0382 -0.7256 -1.2483 17 1 3.1280 -0.7446 -1.2362 18 7 1.5758 -0.0191 -2.4455 19 6 2.2642 -0.1261 -3.5993 20 8 3.2668 -0.8069 -3.6463 21 6 1.7883 0.6002 -4.8309 22 8 2.6778 0.3310 -5.9163 23 6 2.3153 0.9762 -7.1387 24 6 3.3321 0.6194 -8.2248 25 1 4.3385 0.8607 -7.8826 26 6 3.0145 1.4021 -9.5171 27 6 3.3007 0.3471 -10.6202 28 6 2.8591 -0.9542 -9.9043 29 8 3.2452 -0.7769 -8.5321 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1313 1.4410 -0.0005 34 1 1.6773 1.9566 -0.8892 35 1 1.6796 1.9558 0.8907 36 1 1.6008 -0.2731 2.1389 37 1 3.1273 -0.6441 1.2993 38 1 2.2539 -1.1748 4.7107 39 1 3.1013 -3.0034 -0.0855 40 1 1.5607 -3.8941 0.0175 41 1 1.8485 -2.6667 -2.1649 42 1 0.4136 -2.1419 -1.2512 43 1 0.7740 0.5257 -2.4079 44 1 0.7860 0.2585 -5.0896 45 1 1.7673 1.6723 -4.6352 46 1 1.3237 0.6429 -7.4453 47 1 2.3059 2.0560 -6.9908 48 1 1.9691 1.7103 -9.5369 49 1 3.6757 2.2622 -9.6221 50 1 4.3613 0.3175 -10.8699 51 1 2.6956 0.5318 -11.5079 52 1 3.3720 -1.8149 -10.3334 53 1 1.7792 -1.0817 -9.9800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274460094.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:41 Heat of formation + Delta-G solvation = -132.438527 kcal Electronic energy + Delta-G solvation = -30830.059939 eV Core-core repulsion = 26701.354715 eV Total energy + Delta-G solvation = -4128.705224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.37299 -40.53375 -39.66409 -38.15659 -36.24945 -34.28769 -33.84692 -33.15976 -31.92114 -31.25143 -28.96140 -28.11406 -27.60184 -26.63046 -25.93857 -23.92209 -22.61748 -22.30318 -22.15899 -21.43659 -19.74488 -18.91366 -18.25397 -17.98363 -17.59709 -17.00421 -16.90030 -16.80107 -16.49875 -15.93073 -15.65755 -15.57531 -15.24002 -15.13833 -14.90715 -14.78662 -14.36207 -14.25050 -14.09538 -13.84062 -13.26114 -13.06534 -13.00533 -12.88960 -12.86442 -12.70570 -12.63094 -12.62317 -12.39488 -12.32594 -12.24593 -12.08687 -11.89115 -11.82953 -11.69730 -11.63258 -11.31518 -11.17549 -10.75762 -10.68575 -10.53895 -10.47504 -9.97195 -8.67490 -7.85886 -5.31370 1.46867 1.49191 1.59535 1.64128 1.85024 2.52153 2.83778 3.06941 3.29368 3.57194 3.62701 3.71590 3.80850 3.95270 3.96813 3.98608 4.12774 4.17827 4.18978 4.28268 4.33425 4.34792 4.43141 4.46008 4.48913 4.59778 4.66065 4.68048 4.81310 4.82225 4.87877 4.90521 4.94785 4.97753 4.98787 5.04189 5.05102 5.11614 5.26559 5.26862 5.30684 5.36171 5.44610 5.56912 5.62160 5.71849 5.76200 6.02516 6.22887 6.40333 6.64667 7.15980 7.32077 7.85149 8.39133 9.21057 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031019 B = 0.001992 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.461207 B =14054.472231 C =14421.724597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.194 3.806 5 N -0.602 5.602 6 C -0.255 4.255 7 H 0.067 0.933 8 C -0.049 4.049 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.297 1.297 13 H -0.288 1.288 14 C 0.143 3.857 15 C -0.128 4.128 16 C 0.177 3.823 17 H 0.047 0.953 18 N -0.703 5.703 19 C 0.505 3.495 20 O -0.579 6.579 21 C 0.049 3.951 22 O -0.396 6.396 23 C 0.048 3.952 24 C 0.071 3.929 25 H 0.071 0.929 26 C -0.138 4.138 27 C -0.150 4.150 28 C 0.034 3.966 29 O -0.407 6.407 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.065 0.935 37 H -0.017 1.017 38 H 0.249 0.751 39 H 0.000 1.000 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.415 0.585 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.097 0.903 49 H 0.102 0.898 50 H 0.079 0.921 51 H 0.107 0.893 52 H 0.085 0.915 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 12.502 -28.131 31.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.068 3.932 5 N -0.325 5.325 6 C -0.385 4.385 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.582 5.582 10 Si 0.794 3.206 11 H -0.190 1.190 12 H -0.224 1.224 13 H -0.214 1.214 14 C 0.017 3.983 15 C -0.168 4.168 16 C 0.072 3.928 17 H 0.065 0.935 18 N -0.357 5.357 19 C 0.292 3.708 20 O -0.457 6.457 21 C -0.030 4.030 22 O -0.315 6.315 23 C -0.028 4.028 24 C 0.013 3.987 25 H 0.089 0.911 26 C -0.176 4.176 27 C -0.187 4.187 28 C -0.042 4.042 29 O -0.327 6.327 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.001 0.999 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.253 0.747 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.116 0.884 49 H 0.121 0.879 50 H 0.097 0.903 51 H 0.126 0.874 52 H 0.103 0.897 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.804 11.783 -27.868 30.636 hybrid contribution -0.386 -0.219 1.275 1.350 sum -5.190 11.564 -26.593 29.460 Atomic orbital electron populations 1.21680 0.92938 1.01896 1.01266 1.21341 0.97543 0.95672 0.94319 1.21721 1.00089 0.94336 1.02482 1.20622 0.94068 0.83490 0.95042 1.44273 1.65279 1.06448 1.16491 1.19494 1.17444 1.15141 0.86430 0.91561 1.25774 0.98658 1.01064 0.98930 1.70194 1.29165 1.40002 1.18826 0.85237 0.79023 0.77377 0.78978 1.19037 1.22397 1.21429 1.20960 0.95683 0.94854 0.86826 1.22237 1.01537 0.95616 0.97378 1.20561 0.97357 0.91210 0.83650 0.93477 1.45914 1.30072 1.50852 1.08845 1.21038 0.83226 0.81224 0.85326 1.90725 1.27618 1.42119 1.85269 1.22324 0.94671 1.01051 0.84950 1.88050 1.51168 1.73023 1.19250 1.23228 0.98504 0.97734 0.83384 1.22951 0.98913 0.81695 0.95123 0.91057 1.23114 1.04460 0.98917 0.91080 1.23274 1.03150 0.93218 0.99077 1.23638 1.00141 0.99428 0.80971 1.88565 1.90118 1.24813 1.29230 0.93637 0.90598 0.93069 0.94328 0.90175 0.92464 0.91711 0.99941 0.94133 0.98177 0.92360 0.92866 0.90433 0.74697 0.87533 0.86771 0.91631 0.89240 0.88449 0.87938 0.90268 0.87443 0.89658 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 7.83 71.98 0.56 -3.15 16 2 C -0.09 -3.04 0.56 -52.10 -0.03 -3.07 16 3 C -0.13 -3.79 8.32 71.98 0.60 -3.19 16 4 C 0.19 9.31 3.98 86.36 0.34 9.66 16 5 N -0.60 -30.47 2.44 -699.09 -1.71 -32.17 16 6 C -0.25 -13.94 9.58 84.03 0.81 -13.14 16 7 H 0.07 3.55 7.89 -2.90 -0.02 3.53 16 8 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 9 N -0.94 -55.46 11.20 21.65 0.24 -55.22 16 10 Si 0.97 44.67 29.59 68.60 2.03 46.70 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 C 0.14 6.43 6.52 86.36 0.56 6.99 16 15 C -0.13 -4.74 5.31 30.67 0.16 -4.57 16 16 C 0.18 6.18 1.57 45.03 0.07 6.25 16 17 H 0.05 1.99 7.57 -2.39 -0.02 1.98 16 18 N -0.70 -18.20 4.29 -442.35 -1.90 -20.10 16 19 C 0.50 14.83 7.87 87.66 0.69 15.52 16 20 O -0.58 -24.19 16.16 16.01 0.26 -23.93 16 21 C 0.05 0.95 6.42 71.24 0.46 1.40 16 22 O -0.40 -10.26 9.86 -126.39 -1.25 -11.50 16 23 C 0.05 0.76 5.47 71.98 0.39 1.16 16 24 C 0.07 1.23 3.81 31.06 0.12 1.35 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 C -0.14 -1.15 6.54 31.85 0.21 -0.94 16 27 C -0.15 -1.26 7.16 32.05 0.23 -1.03 16 28 C 0.03 0.49 7.78 72.65 0.56 1.06 16 29 O -0.41 -9.70 11.00 -146.52 -1.61 -11.31 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.63 6.57 -2.38 -0.02 1.61 16 32 H 0.05 1.80 5.98 -2.39 -0.01 1.79 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.77 7.39 -2.39 -0.02 1.75 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 3.47 6.06 -2.39 -0.01 3.46 16 37 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 38 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.08 2.68 6.34 -2.39 -0.02 2.66 16 43 H 0.41 7.45 6.67 -92.70 -0.62 6.84 16 44 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.10 0.48 7.85 -2.39 -0.02 0.46 16 49 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 51 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 52 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -79.90 408.32 2.49 -77.41 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.27 Total: 18.13 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 6.16 Total: 11.99 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -3.36 Total: -107.50 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -2.60 Total: -46.74 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -79.90 2.49 -77.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274460094.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.024 kcal (2) G-P(sol) polarization free energy of solvation -79.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds