Wall clock time and date at job start Sat Apr 11 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46773 * 299.99825 * 3 2 1 6 6 H 1.48496 * 109.47411 * 59.99816 * 3 2 1 7 7 C 1.37876 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00037 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46986 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.46968 * 179.97438 * 10 9 7 12 12 C 1.46817 * 124.36447 * 90.00611 * 11 10 9 13 13 C 1.54595 * 105.51131 * 163.20198 * 12 11 10 14 14 C 1.54075 * 101.66721 * 24.86810 * 13 12 11 15 15 C 1.54329 * 109.19231 * 218.27626 * 14 13 12 16 16 C 1.45986 * 111.23992 * 160.27804 * 15 14 13 17 17 C 1.53935 * 112.62601 * 61.18988 * 16 15 14 18 18 N 1.44267 * 108.34508 * 278.29509 * 17 16 15 19 19 C 1.46901 * 111.00031 * 221.62418 * 18 17 16 20 20 C 1.52998 * 109.47442 * 164.21960 * 19 18 17 21 21 H 1.09000 * 109.47234 * 54.55745 * 20 19 18 22 22 O 1.42904 * 109.47012 * 294.56249 * 20 19 18 23 23 C 1.53005 * 109.47537 * 174.56317 * 20 19 18 24 24 O 1.42894 * 109.47232 * 184.99924 * 23 20 19 25 25 C 1.48073 * 113.68221 * 95.64185 * 18 17 16 26 26 C 1.50303 * 111.46592 * 97.03932 * 14 13 12 27 27 C 1.34598 * 124.37029 * 270.02186 * 11 10 9 28 28 O 1.21283 * 125.02569 * 0.68001 * 27 11 10 29 29 H 0.96999 * 119.99606 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46905 * 60.00221 * 9 7 2 31 31 H 1.09000 * 109.47073 * 300.00160 * 9 7 2 32 32 H 1.09005 * 109.47186 * 60.00141 * 10 9 7 33 33 H 1.08992 * 109.47283 * 300.00582 * 10 9 7 34 34 H 1.09003 * 110.23854 * 44.18833 * 12 11 10 35 35 H 1.09009 * 110.23635 * 282.21177 * 12 11 10 36 36 H 1.09003 * 110.98729 * 266.77284 * 13 12 11 37 37 H 1.09001 * 110.98562 * 142.96430 * 13 12 11 38 38 H 1.08995 * 109.12536 * 39.82443 * 15 14 13 39 39 H 1.08996 * 109.07608 * 280.69572 * 15 14 13 40 40 H 1.08999 * 108.85201 * 300.37791 * 16 15 14 41 41 H 1.08998 * 108.76818 * 181.94523 * 16 15 14 42 42 H 1.09003 * 109.69091 * 158.58618 * 17 16 15 43 43 H 1.08990 * 109.72419 * 38.02907 * 17 16 15 44 44 H 1.08996 * 109.47302 * 44.21692 * 19 18 17 45 45 H 1.09007 * 109.47230 * 284.21269 * 19 18 17 46 46 H 0.96703 * 114.00080 * 297.71322 * 22 20 19 47 47 H 1.08997 * 109.46720 * 64.99687 * 23 20 19 48 48 H 1.09000 * 109.46942 * 304.99928 * 23 20 19 49 49 H 0.96697 * 114.00032 * 180.02562 * 24 23 20 50 50 H 1.09001 * 108.73328 * 79.26713 * 25 18 17 51 51 H 1.09004 * 108.72830 * 197.32408 * 25 18 17 52 52 H 1.08999 * 108.85112 * 333.74655 * 26 14 13 53 53 H 1.08998 * 108.85196 * 92.22408 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9307 0.0024 12 6 1.0991 -5.6494 -1.2091 13 6 0.7663 -7.0858 -0.7445 14 6 0.4161 -6.8602 0.7389 15 6 0.9682 -8.0341 1.5748 16 6 1.0842 -7.6713 2.9841 17 6 -0.2711 -7.3031 3.6143 18 7 -0.5707 -5.9325 3.2782 19 6 -1.1336 -5.2184 4.4320 20 6 -1.0726 -3.7109 4.1782 21 1 -1.5663 -3.4811 3.2340 22 8 0.2926 -3.2933 4.1157 23 6 -1.7800 -2.9729 5.3166 24 8 -1.8253 -1.5753 5.0227 25 6 -1.4409 -5.7884 2.0888 26 6 -1.0690 -6.7506 0.9428 27 6 1.1320 -5.5878 1.1137 28 8 1.3343 -5.2112 2.2488 29 1 -0.4849 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8713 -3.6040 0.8923 33 1 2.8727 -3.6047 -0.8876 34 1 1.9131 -5.6665 -1.9339 35 1 0.2164 -5.1795 -1.6433 36 1 1.6327 -7.7395 -0.8460 37 1 -0.0881 -7.4849 -1.2911 38 1 1.9517 -8.3112 1.1953 39 1 0.2956 -8.8865 1.4797 40 1 1.7577 -6.8190 3.0741 41 1 1.5088 -8.5142 3.5294 42 1 -0.2141 -7.4115 4.6974 43 1 -1.0495 -7.9564 3.2204 44 1 -0.5576 -5.4601 5.3252 45 1 -2.1710 -5.5209 4.5757 46 1 0.7853 -3.4353 4.9356 47 1 -1.2341 -3.1311 6.2467 48 1 -2.7954 -3.3551 5.4217 49 1 -2.2607 -1.0441 5.7033 50 1 -2.4726 -5.9786 2.3848 51 1 -1.3676 -4.7640 1.7235 52 1 -1.5258 -6.3927 0.0201 53 1 -1.4670 -7.7392 1.1718 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274565708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:02 Heat of formation + Delta-G solvation = -127.817352 kcal Electronic energy + Delta-G solvation = -33541.892608 eV Core-core repulsion = 29413.387773 eV Total energy + Delta-G solvation = -4128.504835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.09950 -39.63532 -38.35211 -36.95717 -36.81118 -35.95168 -34.94220 -33.56391 -32.25707 -31.17394 -29.76017 -27.68798 -26.90462 -26.32922 -25.09123 -23.74833 -23.16543 -22.32143 -21.55199 -20.73426 -19.21179 -18.58161 -18.47715 -17.62707 -17.44776 -16.90775 -16.84059 -16.52249 -16.43885 -15.91146 -15.82618 -15.65989 -14.89164 -14.68373 -14.53916 -14.39893 -14.29044 -14.16096 -13.96629 -13.75969 -13.55451 -13.47248 -13.20034 -13.05060 -12.97649 -12.87230 -12.71033 -12.59056 -12.49099 -12.12169 -11.86831 -11.83385 -11.67126 -11.56098 -11.48079 -11.32331 -11.21651 -11.07800 -11.05489 -10.67132 -10.56364 -9.76267 -9.11680 -8.56552 -8.18420 -6.30770 1.35621 1.39189 1.51693 2.21017 2.37489 2.54931 2.83030 3.14565 3.37438 3.45611 3.64891 3.69681 3.90275 3.97240 4.09043 4.14597 4.18099 4.24240 4.27001 4.32302 4.40481 4.43226 4.45097 4.46723 4.52461 4.63092 4.67943 4.73707 4.76368 4.78119 4.83998 4.93332 4.97188 5.03371 5.08886 5.11886 5.19954 5.25909 5.29935 5.33722 5.43837 5.46632 5.62309 5.72898 5.85289 6.03760 6.27109 6.30038 6.63846 6.76937 6.85669 6.87744 7.10460 7.37784 7.87851 8.93646 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.005158 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.415750 B = 5427.054552 C = 7640.656673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.155 3.845 11 N -0.639 5.639 12 C 0.096 3.904 13 C -0.109 4.109 14 C -0.081 4.081 15 C -0.084 4.084 16 C -0.137 4.137 17 C 0.076 3.924 18 N -0.523 5.523 19 C 0.049 3.951 20 C 0.112 3.888 21 H 0.046 0.954 22 O -0.549 6.549 23 C 0.049 3.951 24 O -0.595 6.595 25 C 0.067 3.933 26 C -0.091 4.091 27 C 0.495 3.505 28 O -0.480 6.480 29 H 0.261 0.739 30 H -0.015 1.015 31 H -0.028 1.028 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.368 0.632 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.393 0.607 50 H 0.039 0.961 51 H 0.016 0.984 52 H 0.072 0.928 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 -21.205 7.127 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.002 4.002 10 C 0.032 3.968 11 N -0.375 5.375 12 C -0.027 4.027 13 C -0.147 4.147 14 C -0.085 4.085 15 C -0.121 4.121 16 C -0.175 4.175 17 C -0.051 4.051 18 N -0.247 5.247 19 C -0.079 4.079 20 C 0.052 3.948 21 H 0.064 0.936 22 O -0.353 6.353 23 C -0.030 4.030 24 O -0.403 6.403 25 C -0.061 4.061 26 C -0.129 4.129 27 C 0.281 3.719 28 O -0.351 6.351 29 H 0.069 0.931 30 H 0.003 0.997 31 H -0.010 1.010 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.214 0.786 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.242 0.758 50 H 0.057 0.943 51 H 0.035 0.965 52 H 0.091 0.909 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.839 -20.687 6.489 22.017 hybrid contribution -0.891 1.510 1.082 2.060 sum -4.730 -19.176 7.570 21.152 Atomic orbital electron populations 1.70160 1.08036 1.27420 1.51511 1.26016 0.95730 1.03527 0.94516 0.85359 0.79194 0.78498 0.77730 1.18168 1.19670 1.20915 1.21564 0.93425 0.92116 1.50745 0.92044 1.19066 0.94343 0.93221 0.93539 1.21052 0.93513 0.81968 1.00226 1.48675 1.57826 1.22583 1.08393 1.22173 1.00050 0.92944 0.87567 1.22773 1.04199 0.94530 0.93164 1.20836 0.95892 0.94447 0.97311 1.20505 1.01434 0.95383 0.94807 1.20814 0.98896 1.01616 0.96126 1.21697 0.96739 0.87197 0.99506 1.60426 1.46519 1.14641 1.03121 1.22625 0.98616 0.92527 0.94129 1.21823 0.82938 0.92992 0.97091 0.93561 1.86934 1.22356 1.86004 1.39978 1.22993 1.00672 0.81567 0.97720 1.86676 1.83103 1.19528 1.51021 1.22328 0.93818 0.98124 0.91826 1.21284 0.93443 1.00596 0.97602 1.21071 0.79777 0.86488 0.84531 1.90747 1.53792 1.70276 1.20335 0.93068 0.99656 1.01003 0.93595 0.90876 0.89737 0.93279 0.88222 0.86980 0.91730 0.89324 0.91279 0.91513 0.91146 0.93208 0.88986 0.93194 0.78580 0.90927 0.91019 0.75764 0.94309 0.96502 0.90933 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -62.23 13.29 21.45 0.28 -61.95 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 48.14 29.54 68.60 2.03 50.17 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.54 -33.89 9.11 25.60 0.23 -33.66 16 8 H 0.06 3.67 7.74 -2.91 -0.02 3.64 16 9 C 0.04 2.19 5.30 29.85 0.16 2.35 16 10 C 0.15 7.44 5.88 86.38 0.51 7.95 16 11 N -0.64 -25.34 2.94 -818.09 -2.40 -27.74 16 12 C 0.10 2.77 7.36 86.86 0.64 3.41 16 13 C -0.11 -2.17 6.09 31.50 0.19 -1.98 16 14 C -0.08 -2.05 0.56 -52.97 -0.03 -2.08 16 15 C -0.08 -1.68 4.46 28.89 0.13 -1.55 16 16 C -0.14 -3.20 5.17 28.76 0.15 -3.05 16 17 C 0.08 1.69 5.40 87.11 0.47 2.17 16 18 N -0.52 -15.30 1.38 -895.51 -1.24 -16.54 16 19 C 0.05 1.30 4.52 86.30 0.39 1.69 16 20 C 0.11 3.95 3.25 30.60 0.10 4.05 16 21 H 0.05 2.10 6.65 -2.39 -0.02 2.08 16 22 O -0.55 -24.03 12.46 -134.92 -1.68 -25.71 16 23 C 0.05 1.32 6.66 71.98 0.48 1.80 16 24 O -0.60 -20.44 13.62 -144.34 -1.97 -22.40 16 25 C 0.07 2.03 4.19 86.48 0.36 2.40 16 26 C -0.09 -2.17 4.68 30.13 0.14 -2.03 16 27 C 0.49 18.67 5.61 87.70 0.49 19.17 16 28 O -0.48 -21.10 10.71 1.78 0.02 -21.09 16 29 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 30 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H -0.03 -2.01 8.14 -2.39 -0.02 -2.03 16 32 H 0.05 2.36 7.94 -2.38 -0.02 2.34 16 33 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 1.52 8.14 -2.38 -0.02 1.51 16 36 H 0.10 1.60 7.52 -2.39 -0.02 1.58 16 37 H 0.11 1.59 7.76 -2.39 -0.02 1.57 16 38 H 0.06 1.24 7.62 -2.39 -0.02 1.23 16 39 H 0.09 1.27 7.63 -2.39 -0.02 1.25 16 40 H 0.07 2.28 5.22 -2.39 -0.01 2.26 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.37 7.30 -2.39 -0.02 1.35 16 43 H 0.05 0.92 6.77 -2.39 -0.02 0.90 16 44 H 0.09 2.06 7.61 -2.39 -0.02 2.04 16 45 H 0.05 1.09 7.92 -2.38 -0.02 1.08 16 46 H 0.37 12.76 9.04 -74.06 -0.67 12.09 16 47 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.39 8.62 9.12 -74.06 -0.68 7.94 16 50 H 0.04 1.03 7.87 -2.39 -0.02 1.01 16 51 H 0.02 0.70 6.82 -2.38 -0.02 0.68 16 52 H 0.07 1.71 7.68 -2.39 -0.02 1.69 16 53 H 0.10 1.69 6.70 -2.39 -0.02 1.67 16 Total: -1.00 -90.39 397.30 -0.51 -90.90 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.43 Total: 33.29 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 4.88 Total: 1.06 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.36 Total: -106.23 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -3.63 Total: -69.20 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -90.39 -0.51 -90.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274565708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.914 kcal (2) G-P(sol) polarization free energy of solvation -90.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds