Wall clock time and date at job start Sat Apr 11 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46988 * 2 1 4 4 C 1.52998 * 109.47176 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47111 * 59.99485 * 4 3 2 6 6 O 1.42907 * 109.47090 * 60.00424 * 5 4 3 7 7 C 1.42893 * 114.00028 * 149.99758 * 6 5 4 8 8 C 1.50699 * 109.47190 * 179.97438 * 7 6 5 9 9 O 1.21289 * 119.99948 * 359.72727 * 8 7 6 10 10 N 1.34775 * 120.00202 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99905 * 174.53216 * 10 8 7 12 12 C 1.53002 * 112.94400 * 295.30414 * 11 10 8 13 13 C 1.53001 * 109.47111 * 304.23830 * 12 11 10 14 14 O 1.42903 * 109.47127 * 178.34491 * 13 12 11 15 15 C 1.53945 * 113.74283 * 163.71949 * 11 10 8 16 16 N 1.47814 * 86.03686 * 222.08042 * 15 11 10 17 17 C 1.36935 * 134.45310 * 204.64168 * 16 15 11 18 18 H 1.08007 * 119.99497 * 179.86176 * 17 16 15 19 19 C 1.38808 * 120.00446 * 359.86848 * 17 16 15 20 20 N 1.31621 * 119.99942 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47284 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46894 * 119.99767 * 21 19 17 24 24 H 1.48504 * 109.46773 * 239.99330 * 21 19 17 25 25 C 1.47583 * 91.04952 * 24.54789 * 16 15 11 26 26 C 1.52996 * 109.47372 * 300.00206 * 5 4 3 27 27 C 1.52994 * 109.47295 * 239.99809 * 2 1 3 28 28 H 1.09001 * 109.46945 * 60.00032 * 1 2 3 29 29 H 1.08993 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46803 * 300.00088 * 1 2 3 31 31 H 1.09002 * 109.47100 * 119.99438 * 2 1 3 32 32 H 1.08997 * 109.47136 * 59.99612 * 3 2 1 33 33 H 1.09010 * 109.46712 * 299.99988 * 3 2 1 34 34 H 1.09001 * 109.46729 * 299.99951 * 4 3 2 35 35 H 1.08997 * 109.47353 * 179.97438 * 4 3 2 36 36 H 1.08998 * 109.46899 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47251 * 59.99975 * 7 6 5 38 38 H 1.08994 * 109.47413 * 299.99661 * 7 6 5 39 39 H 0.96995 * 120.00084 * 354.52256 * 10 8 7 40 40 H 1.09003 * 109.46786 * 64.23220 * 12 11 10 41 41 H 1.08998 * 109.47204 * 184.23221 * 12 11 10 42 42 H 1.08999 * 109.46811 * 298.34445 * 13 12 11 43 43 H 1.08999 * 109.47161 * 58.34695 * 13 12 11 44 44 H 0.96695 * 114.00119 * 179.97438 * 14 13 12 45 45 H 1.09007 * 113.76818 * 336.34218 * 15 11 10 46 46 H 1.09005 * 113.77433 * 107.74069 * 15 11 10 47 47 H 0.96991 * 119.99831 * 180.02562 * 20 19 17 48 48 H 1.08998 * 113.76371 * 221.15306 * 25 16 15 49 49 H 1.08995 * 113.87307 * 89.76823 * 25 16 15 50 50 H 1.09002 * 109.47272 * 179.97438 * 26 5 4 51 51 H 1.09001 * 109.47406 * 300.00108 * 26 5 4 52 52 H 1.09002 * 109.47371 * 300.00042 * 27 2 1 53 53 H 1.09010 * 109.47094 * 59.99589 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0795 0.7214 -1.2502 6 8 3.6027 1.3952 -2.4167 7 6 4.4744 1.2925 -3.5443 8 6 3.8758 2.0346 -4.7113 9 8 2.8053 2.5921 -4.5908 10 7 4.5269 2.0738 -5.8907 11 6 3.8922 2.6913 -7.0577 12 6 2.6387 1.9453 -7.5194 13 6 2.9890 0.4818 -7.7957 14 8 1.8105 -0.2239 -8.1898 15 6 4.8743 3.0174 -8.1975 16 7 4.1387 4.2928 -8.3285 17 6 3.9456 5.1884 -9.3462 18 1 3.3449 6.0708 -9.1822 19 6 4.5219 4.9620 -10.5886 20 7 5.2542 3.8868 -10.7883 21 14 4.2579 6.1835 -11.9771 22 1 3.4021 7.2989 -11.4991 23 1 5.5697 6.7202 -12.4203 24 1 3.5916 5.5018 -13.1159 25 6 3.6942 4.2121 -6.9235 26 6 3.5696 -0.7210 -1.2501 27 6 2.0401 -0.7213 -1.2492 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9564 -0.8901 34 1 3.9337 0.9286 0.8891 35 1 3.9334 2.4702 -0.0011 36 1 5.1695 0.7219 -1.2508 37 1 4.6037 0.2431 -3.8093 38 1 5.4429 1.7264 -3.2956 39 1 5.4159 1.6933 -5.9667 40 1 1.8781 1.9959 -6.7402 41 1 2.2567 2.4058 -8.4305 42 1 3.7280 0.4298 -8.5951 43 1 3.3983 0.0294 -6.8924 44 1 1.9583 -1.1600 -8.3817 45 1 5.9062 3.1374 -7.8673 46 1 4.7767 2.3617 -9.0627 47 1 5.6572 3.7288 -11.6563 48 1 2.6560 4.5084 -6.7735 49 1 4.3773 4.6834 -6.2169 50 1 3.9322 -1.2347 -2.1405 51 1 3.9332 -1.2350 -0.3603 52 1 1.6768 -1.7489 -1.2492 53 1 1.6767 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276106980.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:07 Heat of formation + Delta-G solvation = -121.396732 kcal Electronic energy + Delta-G solvation = -31262.672125 eV Core-core repulsion = 27134.445709 eV Total energy + Delta-G solvation = -4128.226416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.49791 -40.39750 -39.23608 -37.71615 -37.19550 -35.26451 -33.83038 -32.72378 -31.94609 -31.64476 -29.35339 -28.42711 -26.86643 -26.86229 -24.98473 -23.57088 -23.33713 -22.09956 -21.79340 -20.50952 -20.13089 -18.79574 -18.53884 -18.18396 -17.38931 -17.16975 -16.80951 -16.61844 -16.36345 -16.05281 -15.78268 -15.40564 -15.14723 -15.04300 -15.03658 -14.67630 -14.39230 -13.91537 -13.89424 -13.73680 -13.47354 -13.34685 -13.23577 -13.09126 -12.89307 -12.81348 -12.59890 -12.52761 -12.34573 -12.29201 -12.25567 -12.01588 -11.95030 -11.74473 -11.41881 -11.34519 -11.17307 -10.98559 -10.88513 -10.87317 -10.57423 -10.32252 -10.04567 -8.97424 -7.94683 -5.27452 1.45025 1.46188 1.56211 1.69148 1.86690 2.45980 3.05659 3.13758 3.25593 3.39408 3.60337 3.78541 3.82739 3.90930 3.95810 4.11397 4.22976 4.25949 4.28423 4.29913 4.32186 4.38680 4.45369 4.47331 4.57342 4.68755 4.69940 4.71158 4.72513 4.79276 4.83814 4.92909 4.99286 5.01559 5.02509 5.11761 5.15852 5.17084 5.19360 5.21180 5.34499 5.38211 5.42392 5.46466 5.47872 5.69163 5.70828 5.88417 6.28323 6.69625 6.89685 6.91137 7.37455 7.55078 8.48469 9.22423 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002432 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.380433 B =11508.468471 C =11947.664622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.114 4.114 5 C 0.081 3.919 6 O -0.381 6.381 7 C 0.049 3.951 8 C 0.508 3.492 9 O -0.563 6.563 10 N -0.704 5.704 11 C 0.158 3.842 12 C -0.090 4.090 13 C 0.094 3.906 14 O -0.594 6.594 15 C 0.174 3.826 16 N -0.632 5.632 17 C -0.237 4.237 18 H 0.077 0.923 19 C -0.058 4.058 20 N -0.946 5.946 21 Si 0.978 3.022 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.125 3.875 26 C -0.137 4.137 27 C -0.111 4.111 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.417 0.583 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.397 0.603 45 H 0.038 0.962 46 H 0.060 0.940 47 H 0.252 0.748 48 H 0.034 0.966 49 H 0.041 0.959 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.065 0.935 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 -15.447 22.581 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.150 4.150 4 C -0.151 4.151 5 C 0.023 3.977 6 O -0.300 6.300 7 C -0.030 4.030 8 C 0.295 3.705 9 O -0.441 6.441 10 N -0.359 5.359 11 C 0.070 3.930 12 C -0.129 4.129 13 C 0.016 3.984 14 O -0.402 6.402 15 C 0.049 3.951 16 N -0.359 5.359 17 C -0.365 4.365 18 H 0.095 0.905 19 C -0.251 4.251 20 N -0.594 5.594 21 Si 0.806 3.194 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.217 1.217 25 C -0.001 4.001 26 C -0.174 4.174 27 C -0.148 4.148 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.255 0.745 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.247 0.753 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.110 0.890 52 H 0.083 0.917 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.462 -14.242 22.454 26.594 hybrid contribution 0.615 0.335 -1.339 1.511 sum 1.077 -13.907 21.115 25.307 Atomic orbital electron populations 1.21833 0.95725 1.01777 1.01228 1.21115 0.95243 0.95700 0.98470 1.21486 0.95862 0.96691 1.00946 1.21653 0.95906 1.00891 0.96641 1.22393 0.98518 0.91918 0.84827 1.88074 1.46427 1.75486 1.20006 1.22319 0.94149 1.01133 0.85446 1.21029 0.84997 0.80245 0.84213 1.90718 1.23898 1.45799 1.83657 1.45820 1.20856 1.60890 1.08314 1.22157 0.94041 0.91114 0.85644 1.21183 0.96296 0.94938 1.00440 1.21948 0.86725 0.90948 0.98774 1.86444 1.34911 1.27898 1.90959 1.22467 0.92626 0.86779 0.93255 1.46016 1.58569 1.24792 1.06567 1.19328 1.26304 1.01377 0.89464 0.90519 1.25536 0.99887 1.00073 0.99641 1.69930 1.38010 1.28275 1.23210 0.85031 0.77184 0.78262 0.78953 1.19604 1.21433 1.21663 1.22862 0.97360 0.93809 0.86102 1.22020 0.95949 0.96158 1.03322 1.21456 0.95949 0.99850 0.97579 0.94507 0.92066 0.92171 0.89825 0.91724 0.94285 0.88347 0.92076 0.89794 0.87664 0.87608 0.74533 0.92401 0.93041 0.93213 0.91870 0.75340 0.94423 0.92149 0.93913 0.94741 0.94116 0.91408 0.88981 0.91656 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.19 71.98 0.66 -1.79 16 2 C -0.09 -1.38 2.72 -10.79 -0.03 -1.41 16 3 C -0.11 -2.07 5.06 30.60 0.15 -1.91 16 4 C -0.11 -1.69 5.66 30.59 0.17 -1.52 16 5 C 0.08 1.22 2.92 30.59 0.09 1.31 16 6 O -0.38 -8.94 8.17 -129.94 -1.06 -10.00 16 7 C 0.05 0.93 6.23 71.24 0.44 1.38 16 8 C 0.51 14.91 7.57 87.66 0.66 15.58 16 9 O -0.56 -22.71 14.90 15.98 0.24 -22.47 16 10 N -0.70 -19.62 4.53 -427.55 -1.94 -21.55 16 11 C 0.16 6.04 0.67 5.36 0.00 6.04 16 12 C -0.09 -3.58 4.81 30.60 0.15 -3.43 16 13 C 0.09 2.95 6.83 71.98 0.49 3.44 16 14 O -0.59 -18.43 13.66 -148.98 -2.04 -20.47 16 15 C 0.17 7.84 6.69 86.44 0.58 8.42 16 16 N -0.63 -33.27 3.55 -715.47 -2.54 -35.81 16 17 C -0.24 -13.63 10.70 84.03 0.90 -12.73 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 19 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 20 N -0.95 -55.35 11.39 21.65 0.25 -55.10 16 21 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 C 0.12 5.69 7.55 86.48 0.65 6.35 16 26 C -0.14 -1.78 5.63 30.58 0.17 -1.61 16 27 C -0.11 -1.91 5.06 30.58 0.15 -1.75 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 1.01 7.68 -2.38 -0.02 0.99 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.87 7.79 -2.39 -0.02 0.85 16 37 H 0.11 1.37 7.87 -2.38 -0.02 1.35 16 38 H 0.11 1.38 8.08 -2.39 -0.02 1.37 16 39 H 0.42 8.34 8.70 -92.71 -0.81 7.54 16 40 H 0.06 2.48 7.08 -2.39 -0.02 2.47 16 41 H 0.05 2.44 8.02 -2.39 -0.02 2.42 16 42 H 0.05 1.57 7.54 -2.39 -0.02 1.55 16 43 H 0.06 1.64 7.62 -2.39 -0.02 1.62 16 44 H 0.40 7.57 9.12 -74.06 -0.68 6.90 16 45 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.06 2.99 6.56 -2.38 -0.02 2.98 16 47 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 48 H 0.03 1.67 8.10 -2.39 -0.02 1.65 16 49 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.07 0.82 7.87 -2.39 -0.02 0.80 16 51 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.04 0.95 7.68 -2.38 -0.02 0.93 16 Total: -1.00 -78.20 415.28 0.08 -78.12 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.59 Total: 25.60 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 5.72 Total: 13.54 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -4.23 Total: -112.46 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -2.86 Total: -52.93 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -78.20 0.08 -78.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276106980.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.275 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds