Wall clock time and date at job start Sat Apr 11 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99906 * 2 1 4 4 C 1.53001 * 109.46988 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46993 * 64.99870 * 4 3 2 6 6 C 1.36938 * 120.00206 * 264.71791 * 5 4 3 7 7 H 1.08005 * 119.99636 * 144.57984 * 6 5 4 8 8 C 1.38805 * 120.00154 * 324.57639 * 6 5 4 9 9 N 1.31622 * 120.00097 * 336.78486 * 8 6 5 10 10 Si 1.86792 * 120.00169 * 156.77872 * 8 6 5 11 11 H 1.48497 * 109.47176 * 90.00239 * 10 8 6 12 12 H 1.48499 * 109.47721 * 210.00410 * 10 8 6 13 13 H 1.48504 * 109.47414 * 330.00614 * 10 8 6 14 14 C 1.46504 * 119.99859 * 84.71723 * 5 4 3 15 15 C 1.53043 * 109.45964 * 119.99831 * 14 5 4 16 16 C 1.53190 * 109.31511 * 181.38846 * 15 14 5 17 17 N 1.46932 * 108.77290 * 305.36532 * 16 15 14 18 18 C 1.34771 * 120.62617 * 233.58249 * 17 16 15 19 19 O 1.21277 * 120.00703 * 5.34005 * 18 17 16 20 20 C 1.50699 * 119.99574 * 185.05818 * 18 17 16 21 21 C 1.53000 * 110.45963 * 57.84266 * 20 18 17 22 22 C 1.54511 * 110.51555 * 180.44457 * 20 18 17 23 23 C 1.54797 * 103.91125 * 118.61064 * 22 20 18 24 24 O 1.44424 * 104.85905 * 336.12176 * 23 22 20 25 25 C 1.44425 * 105.27427 * 40.46081 * 24 23 22 26 26 C 1.46923 * 118.73607 * 53.86140 * 17 16 15 27 27 C 1.53034 * 109.46359 * 240.06785 * 14 5 4 28 28 H 1.08995 * 109.47340 * 59.99868 * 1 2 3 29 29 H 1.08995 * 109.47027 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46974 * 299.99676 * 1 2 3 31 31 H 1.09001 * 109.46789 * 60.00171 * 3 2 1 32 32 H 1.08996 * 109.46929 * 300.00342 * 3 2 1 33 33 H 1.08999 * 109.46823 * 305.00116 * 4 3 2 34 34 H 1.08996 * 109.46851 * 184.99815 * 4 3 2 35 35 H 0.96996 * 120.00138 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.44932 * 0.03513 * 14 5 4 37 37 H 1.08997 * 109.49646 * 61.43274 * 15 14 5 38 38 H 1.09006 * 109.52485 * 301.35664 * 15 14 5 39 39 H 1.08995 * 109.58554 * 185.57911 * 16 15 14 40 40 H 1.09000 * 109.58886 * 65.14854 * 16 15 14 41 41 H 1.08992 * 109.47559 * 65.59075 * 21 20 18 42 42 H 1.09004 * 109.47718 * 185.59999 * 21 20 18 43 43 H 1.09005 * 109.46721 * 305.59618 * 21 20 18 44 44 H 1.09000 * 110.51479 * 237.29327 * 22 20 18 45 45 H 1.09001 * 110.50454 * 0.02562 * 22 20 18 46 46 H 1.09005 * 110.38760 * 217.25220 * 23 22 20 47 47 H 1.08994 * 110.30245 * 94.95575 * 23 22 20 48 48 H 1.08996 * 110.37344 * 200.65347 * 25 24 23 49 49 H 1.09004 * 110.37030 * 78.31895 * 25 24 23 50 50 H 1.08996 * 109.58919 * 65.92905 * 26 17 16 51 51 H 1.09006 * 109.58158 * 186.35219 * 26 17 16 52 52 H 1.08999 * 109.49943 * 298.56399 * 27 14 5 53 53 H 1.09002 * 109.49715 * 58.63345 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2009 -0.7853 -1.3061 7 1 3.9648 -1.3370 -2.2041 8 6 4.7327 -1.4442 -0.2063 9 7 5.4324 -0.7761 0.6862 10 14 4.4553 -3.2790 0.0074 11 1 5.5523 -4.0263 -0.6583 12 1 4.4368 -3.6118 1.4545 13 1 3.1562 -3.6578 -0.6042 14 6 4.1749 1.3881 -2.4478 15 6 5.6296 1.2739 -2.9091 16 6 5.8428 2.1633 -4.1381 17 7 4.8545 1.7991 -5.1625 18 6 5.2463 1.4815 -6.4123 19 8 6.4274 1.4001 -6.6754 20 6 4.2166 1.2214 -7.4815 21 6 3.3040 2.4375 -7.6523 22 6 4.9030 0.8676 -8.8197 23 6 4.4056 -0.5660 -9.1255 24 8 4.0414 -1.1138 -7.8398 25 6 3.3857 -0.0349 -7.1385 26 6 3.4307 1.7936 -4.8001 27 6 3.2450 0.9030 -3.5622 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 5.8038 -1.2365 1.4550 36 1 3.9489 2.4284 -2.2134 37 1 5.8491 0.2379 -3.1672 38 1 6.2927 1.5972 -2.1066 39 1 6.8484 2.0103 -4.5297 40 1 5.7119 3.2089 -3.8595 41 1 3.8849 3.2769 -8.0342 42 1 2.5065 2.1975 -8.3555 43 1 2.8703 2.7045 -6.6885 44 1 4.5904 1.5576 -9.6035 45 1 5.9872 0.8804 -8.7079 46 1 5.2028 -1.1563 -9.5774 47 1 3.5374 -0.5328 -9.7836 48 1 3.3993 -0.2172 -6.0640 49 1 2.3609 0.0798 -7.4918 50 1 3.1072 2.8097 -4.5745 51 1 2.8443 1.3967 -5.6289 52 1 3.4869 -0.1294 -3.8143 53 1 2.2104 0.9622 -3.2243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277413752.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:21 Heat of formation + Delta-G solvation = -110.649920 kcal Electronic energy + Delta-G solvation = -32756.116024 eV Core-core repulsion = 28628.355624 eV Total energy + Delta-G solvation = -4127.760399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.08598 -39.88098 -38.99846 -38.25075 -36.62336 -35.01136 -33.66380 -32.31542 -31.97650 -30.47101 -29.73766 -27.40532 -27.12720 -26.65640 -25.15255 -24.27633 -23.94147 -22.93186 -22.03931 -21.16987 -19.89599 -18.30389 -17.81449 -17.68913 -17.17823 -17.00675 -16.69202 -16.59466 -16.47893 -15.92192 -15.75177 -15.66901 -15.46050 -15.21129 -15.07660 -14.55207 -14.47614 -14.22940 -13.78405 -13.64050 -13.40525 -13.30781 -13.17728 -13.17330 -12.84107 -12.75980 -12.60317 -12.46695 -12.41990 -12.32727 -12.21410 -12.06212 -11.97359 -11.79933 -11.62659 -11.49724 -11.45231 -11.11939 -10.93566 -10.55219 -10.37709 -10.27173 -9.63717 -8.45558 -7.74687 -5.25510 1.42682 1.46175 1.54097 1.55253 1.98886 2.57472 2.98223 3.24854 3.26634 3.37495 3.44925 3.62238 3.82868 3.91686 4.04617 4.13411 4.18814 4.21454 4.29230 4.36176 4.43582 4.46862 4.51780 4.56774 4.59936 4.64784 4.67392 4.71570 4.72785 4.76018 4.81994 4.83409 4.86941 4.89060 4.90974 4.94564 4.97731 5.04314 5.10940 5.18748 5.22617 5.27028 5.47309 5.61548 5.66719 5.77926 5.80104 5.86031 6.42822 6.51670 6.71387 7.12511 7.29638 8.00769 8.47571 9.23728 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.003659 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.532308 B = 7650.204114 C = 7960.458828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.056 3.944 4 C 0.143 3.857 5 N -0.583 5.583 6 C -0.217 4.217 7 H 0.041 0.959 8 C -0.031 4.031 9 N -0.918 5.918 10 Si 0.934 3.066 11 H -0.296 1.296 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.174 3.826 15 C -0.121 4.121 16 C 0.122 3.878 17 N -0.602 5.602 18 C 0.520 3.480 19 O -0.587 6.587 20 C -0.112 4.112 21 C -0.142 4.142 22 C -0.141 4.141 23 C 0.041 3.959 24 O -0.406 6.406 25 C 0.048 3.952 26 C 0.103 3.897 27 C -0.131 4.131 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.245 0.755 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.102 0.898 51 H 0.111 0.889 52 H 0.035 0.965 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.590 11.200 -15.991 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.023 4.023 4 C 0.016 3.984 5 N -0.302 5.302 6 C -0.348 4.348 7 H 0.059 0.941 8 C -0.227 4.227 9 N -0.564 5.564 10 Si 0.765 3.235 11 H -0.224 1.224 12 H -0.221 1.221 13 H -0.203 1.203 14 C 0.067 3.933 15 C -0.161 4.161 16 C -0.001 4.001 17 N -0.334 5.334 18 C 0.309 3.691 19 O -0.468 6.468 20 C -0.115 4.115 21 C -0.199 4.199 22 C -0.179 4.179 23 C -0.035 4.035 24 O -0.326 6.326 25 C -0.029 4.029 26 C -0.019 4.019 27 C -0.171 4.171 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.132 0.868 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.099 0.901 49 H 0.127 0.873 50 H 0.120 0.880 51 H 0.128 0.872 52 H 0.054 0.946 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.755 10.726 -15.871 21.968 hybrid contribution 0.444 -1.197 0.867 1.543 sum -10.311 9.529 -15.004 20.548 Atomic orbital electron populations 1.22805 0.81538 1.02456 1.00178 1.88138 1.19631 1.28940 1.95218 1.23251 0.96421 0.83896 0.98696 1.20932 0.89809 0.96239 0.91378 1.43914 1.75993 1.03607 1.06722 1.18704 1.32593 0.84379 0.99120 0.94144 1.25391 0.97633 0.99651 1.00068 1.70102 1.35727 1.36130 1.14462 0.85802 0.77644 0.83798 0.76305 1.22356 1.22060 1.20336 1.20516 0.91593 0.94091 0.87061 1.22116 0.99804 0.98256 0.95968 1.21562 0.92440 0.98959 0.87184 1.48142 1.08752 1.66933 1.09544 1.20925 0.89589 0.74898 0.83702 1.90614 1.20496 1.53850 1.81851 1.22196 0.95622 0.99543 0.94145 1.22148 0.98754 0.94173 1.04826 1.23119 1.01643 0.97880 0.95233 1.23697 1.00816 0.93327 0.85636 1.89168 1.78221 1.35616 1.29555 1.23925 0.96853 0.83958 0.98123 1.22448 0.79860 1.01740 0.97858 1.22300 1.00618 0.98754 0.95380 0.93376 0.90343 0.93708 0.93716 0.93409 0.91911 0.93210 0.94609 0.90931 0.95527 0.93118 0.91682 0.89036 0.91294 0.88227 0.89889 0.86766 0.91432 0.89104 0.89049 0.90058 0.87347 0.88037 0.87157 0.94574 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.26 10.43 -148.98 -1.55 -17.82 16 3 C 0.06 2.01 6.28 71.98 0.45 2.46 16 4 C 0.14 6.27 5.58 86.38 0.48 6.75 16 5 N -0.58 -26.80 2.34 -677.89 -1.58 -28.38 16 6 C -0.22 -11.70 8.02 84.03 0.67 -11.02 16 7 H 0.04 2.29 6.89 -2.91 -0.02 2.27 16 8 C -0.03 -1.78 4.87 84.86 0.41 -1.36 16 9 N -0.92 -54.16 11.52 21.65 0.25 -53.91 16 10 Si 0.93 47.42 29.61 68.60 2.03 49.45 16 11 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 12 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 13 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 14 C 0.17 6.38 2.59 45.02 0.12 6.49 16 15 C -0.12 -4.77 5.30 30.67 0.16 -4.60 16 16 C 0.12 3.85 6.44 86.36 0.56 4.41 16 17 N -0.60 -17.07 2.96 -818.08 -2.42 -19.49 16 18 C 0.52 15.83 6.48 87.66 0.57 16.40 16 19 O -0.59 -23.00 14.70 -3.02 -0.04 -23.04 16 20 C -0.11 -2.35 0.69 -51.91 -0.04 -2.39 16 21 C -0.14 -1.74 7.96 71.98 0.57 -1.16 16 22 C -0.14 -2.83 6.34 31.72 0.20 -2.63 16 23 C 0.04 0.81 7.64 72.60 0.55 1.37 16 24 O -0.41 -11.46 11.65 -148.98 -1.74 -13.19 16 25 C 0.05 1.07 5.37 72.49 0.39 1.46 16 26 C 0.10 2.25 3.86 86.51 0.33 2.59 16 27 C -0.13 -4.05 5.18 30.82 0.16 -3.89 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 3.34 5.50 -2.39 -0.01 3.33 16 34 H 0.05 2.00 8.03 -2.39 -0.02 1.98 16 35 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.07 2.31 7.86 -2.39 -0.02 2.29 16 37 H 0.03 1.25 7.71 -2.39 -0.02 1.23 16 38 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.06 2.32 7.00 -2.39 -0.02 2.31 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.68 8.02 -2.38 -0.02 0.66 16 43 H 0.08 0.90 4.97 -2.38 -0.01 0.89 16 44 H 0.11 1.49 7.73 -2.39 -0.02 1.47 16 45 H 0.07 1.82 6.50 -2.39 -0.02 1.81 16 46 H 0.09 1.74 8.14 -2.38 -0.02 1.73 16 47 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.08 2.16 5.52 -2.39 -0.01 2.15 16 49 H 0.11 1.57 7.78 -2.39 -0.02 1.56 16 50 H 0.10 1.63 8.03 -2.39 -0.02 1.61 16 51 H 0.11 1.91 3.30 -2.38 -0.01 1.90 16 52 H 0.04 1.37 6.61 -2.39 -0.02 1.36 16 53 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -75.96 397.45 2.68 -73.28 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.89 Total: 16.23 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.85 Total: 16.88 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -3.75 Total: -101.78 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -3.33 Total: -54.05 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -75.96 2.68 -73.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277413752.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.371 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds