Wall clock time and date at job start Sat Apr 11 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.45984 * 2 1 4 4 C 1.34777 * 120.00309 * 59.75022 * 3 2 1 5 5 O 1.21279 * 119.99604 * 0.27697 * 4 3 2 6 6 C 1.50694 * 120.00250 * 180.27815 * 4 3 2 7 7 C 1.53003 * 109.47341 * 180.02562 * 6 4 3 8 8 O 1.42897 * 109.46947 * 180.02562 * 7 6 4 9 9 C 1.42907 * 113.99736 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46987 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.82601 * 305.56984 * 10 9 8 12 12 C 1.54374 * 109.82979 * 184.58629 * 10 9 8 13 13 C 1.55300 * 102.25608 * 219.13261 * 12 10 9 14 14 C 1.54949 * 100.94120 * 34.13361 * 13 12 10 15 15 O 1.43241 * 109.82986 * 66.45575 * 10 9 8 16 16 C 1.53042 * 109.44694 * 119.96248 * 2 1 3 17 17 C 1.53201 * 109.31307 * 181.38205 * 16 2 1 18 18 N 1.46926 * 108.76864 * 305.36521 * 17 16 2 19 19 C 1.36940 * 120.62776 * 233.58373 * 18 17 16 20 20 H 1.08005 * 119.99714 * 27.69953 * 19 18 17 21 21 C 1.38810 * 119.99936 * 207.69688 * 19 18 17 22 22 N 1.31612 * 120.00312 * 17.36885 * 21 19 18 23 23 Si 1.86810 * 119.99772 * 197.36679 * 21 19 18 24 24 H 1.48499 * 109.47002 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46996 * 119.99812 * 23 21 19 26 26 H 1.48494 * 109.47079 * 240.00120 * 23 21 19 27 27 C 1.46920 * 118.74328 * 53.61139 * 18 17 16 28 28 C 1.53034 * 109.46074 * 240.02185 * 2 1 3 29 29 H 1.09001 * 109.47127 * 60.00239 * 1 2 3 30 30 H 1.08995 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47307 * 300.00278 * 1 2 3 32 32 H 0.97002 * 119.99973 * 240.02204 * 3 2 1 33 33 H 1.09005 * 109.47229 * 299.99940 * 6 4 3 34 34 H 1.09001 * 109.47526 * 59.99445 * 6 4 3 35 35 H 1.08999 * 109.46656 * 299.99771 * 7 6 4 36 36 H 1.08996 * 109.47047 * 59.99672 * 7 6 4 37 37 H 1.08992 * 109.46949 * 299.99548 * 9 8 7 38 38 H 1.08997 * 109.46913 * 60.00147 * 9 8 7 39 39 H 1.09000 * 110.85274 * 337.32162 * 12 10 9 40 40 H 1.08998 * 110.84773 * 100.94251 * 12 10 9 41 41 H 1.09003 * 111.12602 * 276.21807 * 13 12 10 42 42 H 1.09001 * 111.16831 * 152.06718 * 13 12 10 43 43 H 1.09004 * 110.30873 * 204.64091 * 14 13 12 44 44 H 1.09000 * 110.39377 * 82.51643 * 14 13 12 45 45 H 1.09003 * 109.50140 * 301.32953 * 16 2 1 46 46 H 1.08993 * 109.49959 * 61.42752 * 16 2 1 47 47 H 1.08999 * 109.58794 * 185.58072 * 17 16 2 48 48 H 1.08999 * 109.58489 * 65.15128 * 17 16 2 49 49 H 0.97002 * 120.00091 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.58717 * 186.60331 * 27 18 17 51 51 H 1.08999 * 109.70604 * 66.24100 * 27 18 17 52 52 H 1.09003 * 109.50080 * 298.57837 * 28 2 1 53 53 H 1.09000 * 109.49821 * 58.68232 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6882 2.2127 1.0082 5 8 0.9914 1.8157 1.9181 6 6 2.1851 3.6353 1.0050 7 6 1.6714 4.3578 2.2521 8 8 2.1422 5.7070 2.2487 9 6 1.7163 6.4740 3.3768 10 6 2.2763 7.8937 3.2690 11 1 3.3588 7.8558 3.1471 12 6 1.9180 8.6958 4.5384 13 6 1.5839 10.0976 3.9593 14 6 0.9433 9.7102 2.6026 15 8 1.6847 8.5658 2.1509 16 6 2.0395 -0.7207 1.2502 17 6 3.5711 -0.6888 1.2647 18 7 4.0676 -1.2493 0.0005 19 6 4.9760 -2.2740 0.0007 20 1 5.0089 -2.9663 0.8291 21 6 5.8544 -2.4230 -1.0637 22 7 6.0606 -1.4212 -1.8921 23 14 6.7441 -4.0455 -1.3204 24 1 6.3412 -5.0040 -0.2602 25 1 6.3871 -4.6007 -2.6506 26 1 8.2106 -3.8216 -1.2548 27 6 3.5714 -0.6891 -1.2638 28 6 2.0398 -0.7210 -1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.5754 1.6988 -0.7277 33 1 3.2751 3.6395 1.0063 34 1 1.8209 4.1454 0.1133 35 1 0.5815 4.3536 2.2513 36 1 2.0361 3.8476 3.1436 37 1 0.6273 6.5134 3.3991 38 1 2.0819 6.0081 4.2918 39 1 1.0497 8.2653 5.0372 40 1 2.7695 8.7493 5.2167 41 1 2.4885 10.6877 3.8123 42 1 0.8719 10.6259 4.5933 43 1 1.0411 10.5296 1.8904 44 1 -0.1067 9.4513 2.7385 45 1 1.6569 -0.2206 2.1400 46 1 1.6973 -1.7555 1.2386 47 1 3.9412 -1.2848 2.0989 48 1 3.9142 0.3407 1.3677 49 1 6.6741 -1.5255 -2.6361 50 1 3.9417 -1.2852 -2.0979 51 1 3.9145 0.3401 -1.3695 52 1 1.6976 -1.7558 -1.2380 53 1 1.6575 -0.2209 -2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278064020.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:31 Heat of formation + Delta-G solvation = -135.364098 kcal Electronic energy + Delta-G solvation = -30536.500078 eV Core-core repulsion = 26407.667991 eV Total energy + Delta-G solvation = -4128.832086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.46869 -40.53984 -39.16706 -38.37440 -36.10078 -33.86158 -33.30103 -33.01959 -32.11943 -31.59334 -30.79550 -29.06875 -26.48053 -25.93604 -24.83904 -23.92958 -22.68743 -22.59776 -22.13026 -21.39532 -20.14411 -18.78903 -18.43443 -18.07476 -17.13058 -17.08977 -16.87398 -16.80534 -16.37129 -15.96419 -15.81072 -15.59657 -15.24950 -14.93281 -14.71814 -14.67705 -14.63135 -14.32392 -14.04304 -13.73702 -13.51575 -13.28799 -13.08329 -13.01912 -12.85136 -12.66527 -12.62284 -12.55366 -12.37355 -12.29417 -12.18852 -12.12612 -12.04710 -11.97869 -11.75275 -11.70753 -11.34857 -11.29356 -10.63375 -10.55195 -10.49450 -10.46166 -9.91646 -8.65584 -7.87237 -5.30926 1.45564 1.48228 1.58175 1.70594 2.06374 2.51348 2.76034 2.98177 3.27375 3.56227 3.68013 3.74860 3.82335 3.93152 3.95454 4.03201 4.06096 4.15709 4.17056 4.19450 4.32008 4.40023 4.47311 4.48638 4.53887 4.64020 4.65076 4.74987 4.77954 4.81120 4.84329 4.85301 4.90274 4.91098 4.93015 4.95425 4.99187 5.04298 5.16617 5.22711 5.25411 5.30505 5.37574 5.49668 5.64685 5.71152 5.78767 6.05038 6.23951 6.39896 6.67599 7.16505 7.32318 7.86936 8.38630 9.18618 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002011 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.574620 B =13920.924442 C =14654.131418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.186 3.814 3 N -0.708 5.708 4 C 0.521 3.479 5 O -0.571 6.571 6 C -0.134 4.134 7 C 0.087 3.913 8 O -0.400 6.400 9 C 0.049 3.951 10 C 0.077 3.923 11 H 0.081 0.919 12 C -0.144 4.144 13 C -0.149 4.149 14 C 0.035 3.965 15 O -0.402 6.402 16 C -0.131 4.131 17 C 0.153 3.847 18 N -0.606 5.606 19 C -0.262 4.262 20 H 0.060 0.940 21 C -0.047 4.047 22 N -0.929 5.929 23 Si 0.964 3.036 24 H -0.271 1.271 25 H -0.288 1.288 26 H -0.293 1.293 27 C 0.177 3.823 28 C -0.131 4.131 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.040 0.960 48 H 0.008 0.992 49 H 0.250 0.750 50 H 0.056 0.944 51 H 0.009 0.991 52 H 0.067 0.933 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.611 20.687 9.375 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.100 3.900 3 N -0.359 5.359 4 C 0.309 3.691 5 O -0.451 6.451 6 C -0.174 4.174 7 C 0.010 3.990 8 O -0.320 6.320 9 C -0.028 4.028 10 C 0.019 3.981 11 H 0.099 0.901 12 C -0.181 4.181 13 C -0.186 4.186 14 C -0.041 4.041 15 O -0.322 6.322 16 C -0.171 4.171 17 C 0.027 3.973 18 N -0.329 5.329 19 C -0.392 4.392 20 H 0.077 0.923 21 C -0.243 4.243 22 N -0.575 5.575 23 Si 0.792 3.208 24 H -0.196 1.196 25 H -0.214 1.214 26 H -0.220 1.220 27 C 0.052 3.948 28 C -0.170 4.170 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.242 0.758 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.026 0.974 49 H 0.059 0.941 50 H 0.074 0.926 51 H 0.027 0.973 52 H 0.086 0.914 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.861 20.393 9.535 25.926 hybrid contribution 0.986 -0.909 -0.319 1.379 sum -11.874 19.483 9.216 24.608 Atomic orbital electron populations 1.22111 0.93520 1.02597 1.02592 1.20182 0.93874 0.80543 0.95364 1.46125 1.52803 1.11589 1.25381 1.20576 0.79477 0.87752 0.81320 1.90601 1.39765 1.78115 1.36648 1.21431 1.03784 0.91266 1.00940 1.21990 0.98154 0.81717 0.97148 1.87846 1.75176 1.22975 1.45965 1.23111 0.99089 0.91609 0.88966 1.22893 0.97980 0.90134 0.87083 0.90124 1.23132 1.03993 0.94825 0.96180 1.23270 1.02396 0.96952 0.96017 1.23633 0.95657 0.88066 0.96705 1.88518 1.69065 1.42558 1.32018 1.22244 0.96489 0.99879 0.98468 1.20853 0.92843 0.95174 0.88442 1.44271 1.48188 1.39572 1.00910 1.19484 1.10146 1.03588 1.06031 0.92253 1.25702 0.98293 1.00289 0.99988 1.70155 1.38560 1.30472 1.18358 0.85267 0.77622 0.80304 0.77588 1.19556 1.21438 1.22036 1.20605 0.89707 0.95692 0.88839 1.22324 0.97818 1.00451 0.96455 0.91756 0.91369 0.91891 0.75778 0.87782 0.86632 0.92856 0.93122 0.92732 0.90835 0.89253 0.88011 0.89843 0.87717 0.89018 0.91846 0.90936 0.92090 0.94101 0.97364 0.94052 0.92563 0.97314 0.91422 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 8.40 71.98 0.60 -3.63 16 2 C 0.19 6.04 0.66 3.63 0.00 6.04 16 3 N -0.71 -21.30 4.10 -422.81 -1.73 -23.03 16 4 C 0.52 15.48 7.25 87.65 0.64 16.11 16 5 O -0.57 -19.68 12.20 -3.03 -0.04 -19.72 16 6 C -0.13 -3.28 6.07 29.85 0.18 -3.10 16 7 C 0.09 2.15 5.23 71.98 0.38 2.53 16 8 O -0.40 -10.17 10.33 -146.53 -1.51 -11.69 16 9 C 0.05 0.94 5.47 71.98 0.39 1.34 16 10 C 0.08 1.34 3.81 31.06 0.12 1.46 16 11 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 12 C -0.14 -1.42 6.54 31.85 0.21 -1.22 16 13 C -0.15 -1.27 7.16 32.05 0.23 -1.05 16 14 C 0.04 0.48 7.78 72.65 0.56 1.04 16 15 O -0.40 -8.78 11.00 -146.53 -1.61 -10.39 16 16 C -0.13 -4.85 4.67 30.68 0.14 -4.70 16 17 C 0.15 6.66 6.26 86.37 0.54 7.20 16 18 N -0.61 -30.14 2.99 -699.08 -2.09 -32.23 16 19 C -0.26 -14.48 9.58 84.03 0.81 -13.68 16 20 H 0.06 3.27 7.89 -2.91 -0.02 3.25 16 21 C -0.05 -2.61 4.91 84.86 0.42 -2.19 16 22 N -0.93 -53.68 11.19 21.65 0.24 -53.43 16 23 Si 0.96 44.80 29.59 68.60 2.03 46.83 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 C 0.18 8.04 5.03 86.37 0.43 8.47 16 28 C -0.13 -4.58 4.96 30.67 0.15 -4.42 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.94 6.16 -2.39 -0.01 1.92 16 32 H 0.41 11.53 7.27 -92.71 -0.67 10.86 16 33 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 34 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 0.73 7.85 -2.39 -0.02 0.71 16 40 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 2.71 6.21 -2.39 -0.01 2.70 16 46 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.04 1.81 7.93 -2.39 -0.02 1.79 16 48 H 0.01 0.38 7.74 -2.39 -0.02 0.36 16 49 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 50 H 0.06 2.93 6.04 -2.39 -0.01 2.92 16 51 H 0.01 0.41 6.94 -2.39 -0.02 0.39 16 52 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 53 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -68.44 407.15 1.30 -67.15 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.21 Total: 26.32 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.81 Total: 10.20 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.58 Total: -108.70 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -3.16 Total: -41.80 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.44 1.30 -67.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278064020.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.217 kcal (2) G-P(sol) polarization free energy of solvation -68.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds