Wall clock time and date at job start Sat Apr 11 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99798 * 2 1 4 4 H 1.48501 * 109.46988 * 270.00193 * 3 2 1 5 5 H 1.48503 * 109.47291 * 30.00107 * 3 2 1 6 6 H 1.48497 * 109.46967 * 149.99963 * 3 2 1 7 7 C 1.38813 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99777 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99850 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99911 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47211 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47056 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.92193 * 302.55307 * 12 11 10 14 14 C 1.55165 * 111.00458 * 66.45406 * 12 11 10 15 15 C 1.54327 * 102.94078 * 153.57403 * 14 12 11 16 16 N 1.47022 * 107.27336 * 337.80587 * 15 14 12 17 17 C 1.34777 * 125.64528 * 178.90269 * 16 15 14 18 18 O 1.21282 * 119.99501 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00291 * 0.02824 * 17 16 15 20 20 C 1.52999 * 109.46999 * 179.97438 * 19 17 16 21 21 O 1.42904 * 109.46896 * 180.02562 * 20 19 17 22 22 C 1.42895 * 114.00011 * 180.02562 * 21 20 19 23 23 C 1.52995 * 109.47295 * 180.02562 * 22 21 20 24 24 H 1.08996 * 110.27587 * 54.29976 * 23 22 21 25 25 C 1.54951 * 110.31142 * 176.38861 * 23 22 21 26 26 C 1.55414 * 100.89130 * 155.28603 * 25 23 22 27 27 C 1.54380 * 102.31180 * 325.99197 * 26 25 23 28 28 O 1.43237 * 107.58927 * 21.28254 * 27 26 25 29 29 C 1.47425 * 108.70334 * 358.94217 * 16 15 14 30 30 H 0.96998 * 120.00218 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00658 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.47146 * 59.99362 * 10 9 7 33 33 H 1.09001 * 109.46623 * 299.99200 * 10 9 7 34 34 H 1.09002 * 109.46909 * 59.99595 * 11 10 9 35 35 H 1.09001 * 109.46574 * 299.99716 * 11 10 9 36 36 H 1.08993 * 110.71917 * 35.21134 * 14 12 11 37 37 H 1.09002 * 110.71751 * 271.93705 * 14 12 11 38 38 H 1.08997 * 109.87800 * 97.22770 * 15 14 12 39 39 H 1.08998 * 109.87662 * 218.38556 * 15 14 12 40 40 H 1.08998 * 109.47080 * 299.99828 * 19 17 16 41 41 H 1.09005 * 109.47183 * 59.99784 * 19 17 16 42 42 H 1.08998 * 109.47487 * 300.00097 * 20 19 17 43 43 H 1.08996 * 109.46805 * 60.00408 * 20 19 17 44 44 H 1.09006 * 109.47243 * 300.00045 * 22 21 20 45 45 H 1.08997 * 109.47380 * 59.99765 * 22 21 20 46 46 H 1.09000 * 111.12272 * 273.27739 * 25 23 22 47 47 H 1.09005 * 111.12258 * 37.43944 * 25 23 22 48 48 H 1.09006 * 110.88137 * 207.74993 * 26 25 23 49 49 H 1.08997 * 110.93390 * 84.25779 * 26 25 23 50 50 H 1.09011 * 109.82910 * 261.77182 * 27 26 25 51 51 H 1.08999 * 109.90578 * 140.84282 * 27 26 25 52 52 H 1.08997 * 110.36855 * 142.96531 * 29 16 15 53 53 H 1.08999 * 110.36490 * 265.17846 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6165 -2.1912 0.0000 12 6 6.3815 -3.5161 0.0006 13 1 6.1016 -4.1268 0.8591 14 6 6.1585 -4.2877 -1.3270 15 6 7.4360 -5.1452 -1.4471 16 7 8.4739 -4.4989 -0.6305 17 6 9.7313 -4.9518 -0.4561 18 8 10.5065 -4.3346 0.2432 19 6 10.1739 -6.2251 -1.1298 20 6 11.6331 -6.5116 -0.7703 21 8 12.0530 -7.7187 -1.4097 22 6 13.4086 -8.0794 -1.1375 23 6 13.7473 -9.3794 -1.8696 24 1 13.5262 -9.2829 -2.9326 25 6 15.2396 -9.7409 -1.6614 26 6 15.2018 -11.2796 -1.8767 27 6 13.8197 -11.6585 -1.3027 28 8 13.0113 -10.4761 -1.3048 29 6 7.9112 -3.2741 -0.0335 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3620 0.0004 32 1 3.8492 -3.0422 -0.8901 33 1 3.8486 -3.0425 0.8899 34 1 5.8797 -1.6195 0.8900 35 1 5.8797 -1.6196 -0.8901 36 1 6.0777 -3.5965 -2.1658 37 1 5.2738 -4.9210 -1.2611 38 1 7.2436 -6.1511 -1.0741 39 1 7.7567 -5.1886 -2.4879 40 1 9.5474 -7.0510 -0.7931 41 1 10.0809 -6.1157 -2.2104 42 1 12.2594 -5.6856 -1.1073 43 1 11.7264 -6.6209 0.3101 44 1 14.0719 -7.2858 -1.4814 45 1 13.5383 -8.2218 -0.0647 46 1 15.8693 -9.2538 -2.4059 47 1 15.5663 -9.4942 -0.6512 48 1 16.0007 -11.7696 -1.3200 49 1 15.2626 -11.5261 -2.9367 50 1 13.9314 -12.0283 -0.2834 51 1 13.3566 -12.4242 -1.9251 52 1 8.2956 -3.1333 0.9767 53 1 8.1462 -2.4080 -0.6521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280106286.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:20 Heat of formation + Delta-G solvation = -149.077726 kcal Electronic energy + Delta-G solvation = -28560.184875 eV Core-core repulsion = 24430.758121 eV Total energy + Delta-G solvation = -4129.426754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -41.24345 -40.49525 -39.18934 -38.46704 -36.97362 -34.60956 -33.45833 -33.11123 -32.69169 -31.15992 -30.67098 -29.06805 -26.52858 -25.74767 -24.51967 -23.63491 -22.95328 -22.55198 -22.20762 -21.27875 -20.16692 -19.57317 -18.53828 -18.07021 -17.50182 -17.23923 -17.01158 -16.78658 -16.62685 -16.22358 -15.84842 -15.75983 -15.68093 -15.23782 -14.96328 -14.75421 -14.39612 -14.36520 -14.18203 -13.95736 -13.68519 -13.47251 -13.46283 -13.17746 -12.90619 -12.82834 -12.68792 -12.52271 -12.40390 -12.30461 -12.16431 -12.11986 -12.05309 -11.87895 -11.73422 -11.69607 -11.54380 -11.49808 -11.04091 -10.94040 -10.67303 -10.48454 -9.71320 -9.28126 -8.02363 -5.35777 1.38936 1.42227 1.49713 1.50775 1.77413 2.49298 2.61741 2.85312 3.29411 3.36952 3.54397 3.56009 3.68884 3.75554 3.82814 3.96172 3.96804 4.02597 4.12070 4.13463 4.28525 4.32486 4.35322 4.37349 4.44017 4.46371 4.48941 4.55249 4.56851 4.61648 4.74235 4.76972 4.78620 4.81786 4.85750 4.89099 4.89816 4.97405 4.99125 5.00866 5.10261 5.21778 5.22891 5.30623 5.37047 5.46421 5.76816 6.03229 6.17821 6.22045 6.44325 7.02377 7.09206 7.86209 8.04467 9.19244 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.039612 B = 0.001330 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.688850 B =21051.237881 C =21522.747491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.237 4.237 8 H 0.057 0.943 9 N -0.763 5.763 10 C 0.155 3.845 11 C -0.107 4.107 12 C -0.087 4.087 13 H 0.087 0.913 14 C -0.126 4.126 15 C 0.098 3.902 16 N -0.617 5.617 17 C 0.529 3.471 18 O -0.589 6.589 19 C -0.125 4.125 20 C 0.081 3.919 21 O -0.398 6.398 22 C 0.060 3.940 23 C 0.077 3.923 24 H 0.077 0.923 25 C -0.144 4.144 26 C -0.149 4.149 27 C 0.037 3.963 28 O -0.405 6.405 29 C 0.110 3.890 30 H 0.258 0.742 31 H 0.366 0.634 32 H 0.034 0.966 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.072 0.928 52 H 0.065 0.935 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.562 -22.725 -6.536 42.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.176 1.176 7 C -0.368 4.368 8 H 0.075 0.925 9 N -0.408 5.408 10 C 0.029 3.971 11 C -0.145 4.145 12 C -0.106 4.106 13 H 0.106 0.894 14 C -0.164 4.164 15 C -0.024 4.024 16 N -0.350 5.350 17 C 0.320 3.680 18 O -0.470 6.470 19 C -0.164 4.164 20 C 0.004 3.996 21 O -0.318 6.318 22 C -0.017 4.017 23 C 0.019 3.981 24 H 0.095 0.905 25 C -0.182 4.182 26 C -0.187 4.187 27 C -0.039 4.039 28 O -0.325 6.325 29 C -0.012 4.012 30 H 0.067 0.933 31 H 0.199 0.801 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.124 0.876 47 H 0.104 0.896 48 H 0.118 0.882 49 H 0.105 0.895 50 H 0.090 0.910 51 H 0.090 0.910 52 H 0.084 0.916 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 35.521 -22.664 -6.212 42.591 hybrid contribution -0.026 1.318 0.370 1.369 sum 35.495 -21.346 -5.842 41.829 Atomic orbital electron populations 1.69889 1.07198 1.26717 1.59748 1.25527 0.96118 1.01339 1.02576 0.85389 0.78635 0.79459 0.78189 1.20240 1.22325 1.17617 1.19072 0.82863 0.93521 1.41344 0.92531 1.42784 1.02528 1.04506 1.91031 1.20798 0.90724 0.87159 0.98429 1.21561 0.93321 0.96928 1.02706 1.22176 0.92432 0.96504 0.99510 0.89434 1.22766 0.97407 0.99055 0.97192 1.22318 0.86644 0.97349 0.96055 1.48595 1.11311 1.25882 1.49228 1.20512 0.80191 0.86694 0.80650 1.90697 1.53435 1.60909 1.41935 1.21388 0.96717 0.94837 1.03500 1.22043 0.94554 0.86432 0.96550 1.87829 1.29342 1.42239 1.72373 1.22834 0.83160 0.95953 0.99732 1.23138 0.91765 0.85691 0.97458 0.90490 1.23283 0.94162 0.96396 1.04348 1.23136 0.97131 0.95389 1.03024 1.23332 0.91262 0.87747 1.01532 1.88490 1.40819 1.19457 1.83736 1.22256 0.92937 0.87351 0.98685 0.93340 0.80133 0.94807 0.96190 0.91687 0.90914 0.89989 0.88780 0.89387 0.89104 0.86663 0.86134 0.92671 0.93527 0.90022 0.92817 0.87598 0.89647 0.88210 0.89542 0.90998 0.91020 0.91628 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.43 13.97 21.65 0.30 -63.13 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.96 45.42 27.74 68.60 1.90 47.33 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.25 -10.76 6.52 99.48 0.65 -10.12 16 7 C -0.24 -13.59 10.47 84.03 0.88 -12.71 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 9 N -0.76 -35.30 5.41 -343.45 -1.86 -37.16 16 10 C 0.15 5.50 6.11 86.38 0.53 6.03 16 11 C -0.11 -2.79 4.84 30.59 0.15 -2.64 16 12 C -0.09 -1.78 3.07 -9.40 -0.03 -1.81 16 13 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 14 C -0.13 -2.11 5.59 31.79 0.18 -1.93 16 15 C 0.10 1.35 6.49 86.73 0.56 1.91 16 16 N -0.62 -12.15 3.33 -811.79 -2.70 -14.85 16 17 C 0.53 11.77 7.85 87.66 0.69 12.46 16 18 O -0.59 -17.84 16.24 -3.04 -0.05 -17.89 16 19 C -0.12 -1.99 5.26 29.85 0.16 -1.83 16 20 C 0.08 1.48 5.23 71.98 0.38 1.86 16 21 O -0.40 -7.61 10.34 -148.28 -1.53 -9.14 16 22 C 0.06 0.85 5.64 71.98 0.41 1.26 16 23 C 0.08 1.00 3.72 31.26 0.12 1.11 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 25 C -0.14 -0.93 6.58 32.09 0.21 -0.71 16 26 C -0.15 -0.83 7.02 31.89 0.22 -0.60 16 27 C 0.04 0.40 7.80 72.45 0.56 0.97 16 28 O -0.40 -7.35 11.04 -148.28 -1.64 -8.99 16 29 C 0.11 2.36 6.37 86.86 0.55 2.92 16 30 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 31 H 0.37 16.07 5.53 -92.71 -0.51 15.56 16 32 H 0.03 1.18 7.51 -2.39 -0.02 1.17 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.08 1.40 8.01 -2.39 -0.02 1.38 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 43 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 44 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.08 0.50 8.06 -2.38 -0.02 0.48 16 48 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 49 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 51 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.07 1.58 8.04 -2.39 -0.02 1.56 16 53 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 Total: -1.00 -78.14 422.46 0.75 -77.39 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.29 Total: 23.49 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.03 Total: 2.95 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -4.25 Total: -115.13 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -3.22 Total: -36.02 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.33 kcal Total: -78.14 0.75 -77.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280106286.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.687 kcal (2) G-P(sol) polarization free energy of solvation -78.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds